Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0313

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0311 and Rru_A0312 are separated by 160 nucleotidesRru_A0312 and Rru_A0313 overlap by 1 nucleotidesRru_A0313 and Rru_A0314 overlap by 8 nucleotides Rru_A0311: Rru_A0311 - Formate/nitrite transporter (NCBI), at 379,347 to 380,279 _A0311 Rru_A0312: Rru_A0312 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 380,440 to 380,853 _A0312 Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136 _A0313 Rru_A0314: Rru_A0314 - NADH dehydrogenase (quinone) (NCBI), at 382,129 to 383,646 _A0314 Position (kb) 380 381 382 383Strain fitness (log2 ratio) -1 0 1at 379.870 kb on - strand, within Rru_A0311at 379.870 kb on - strand, within Rru_A0311at 380.385 kb on - strandat 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.963 kb on - strand, within Rru_A0313at 381.965 kb on - strand, within Rru_A0313at 381.965 kb on - strand, within Rru_A0313at 382.477 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.489 kb on + strand, within Rru_A0314at 382.490 kb on - strand, within Rru_A0314at 382.490 kb on - strand, within Rru_A0314at 382.541 kb on - strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.543 kb on + strand, within Rru_A0314at 382.544 kb on - strand, within Rru_A0314at 382.544 kb on - strand, within Rru_A0314at 382.600 kb on + strand, within Rru_A0314at 382.600 kb on + strand, within Rru_A0314at 382.601 kb on - strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.693 kb on + strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.695 kb on + strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.925 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 383.065 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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379,870 - Rru_A0311 0.56 -1.2
379,870 - Rru_A0311 0.56 +0.1
380,385 - -1.3
381,162 + Rru_A0313 0.24 +0.1
381,162 + Rru_A0313 0.24 -1.5
381,162 + Rru_A0313 0.24 -1.5
381,213 + Rru_A0313 0.28 +0.1
381,213 + Rru_A0313 0.28 +0.1
381,213 + Rru_A0313 0.28 +0.1
381,214 - Rru_A0313 0.28 +0.1
381,214 - Rru_A0313 0.28 -0.9
381,214 - Rru_A0313 0.28 -0.9
381,963 - Rru_A0313 0.86 -0.9
381,963 - Rru_A0313 0.86 -1.6
381,963 - Rru_A0313 0.86 -0.2
381,965 - Rru_A0313 0.87 +0.1
381,965 - Rru_A0313 0.87 +0.1
382,477 + Rru_A0314 0.23 +0.1
382,489 + Rru_A0314 0.24 +0.1
382,489 + Rru_A0314 0.24 -1.2
382,489 + Rru_A0314 0.24 -0.6
382,490 - Rru_A0314 0.24 +0.1
382,490 - Rru_A0314 0.24 -0.5
382,541 - Rru_A0314 0.27 +0.1
382,543 + Rru_A0314 0.27 +0.1
382,543 + Rru_A0314 0.27 -1.0
382,543 + Rru_A0314 0.27 -1.2
382,543 + Rru_A0314 0.27 -0.9
382,543 + Rru_A0314 0.27 -1.0
382,544 - Rru_A0314 0.27 +0.1
382,544 - Rru_A0314 0.27 +0.1
382,600 + Rru_A0314 0.31 +0.1
382,600 + Rru_A0314 0.31 +0.1
382,601 - Rru_A0314 0.31 -0.8
382,663 + Rru_A0314 0.35 -1.1
382,663 + Rru_A0314 0.35 +0.1
382,663 + Rru_A0314 0.35 +0.1
382,663 + Rru_A0314 0.35 -1.4
382,663 + Rru_A0314 0.35 +0.1
382,663 + Rru_A0314 0.35 +0.1
382,663 + Rru_A0314 0.35 +0.1
382,664 - Rru_A0314 0.35 +0.1
382,664 - Rru_A0314 0.35 +0.1
382,693 + Rru_A0314 0.37 -1.1
382,694 - Rru_A0314 0.37 +0.1
382,694 - Rru_A0314 0.37 -0.9
382,695 + Rru_A0314 0.37 +0.1
382,696 - Rru_A0314 0.37 -1.2
382,696 - Rru_A0314 0.37 -1.1
382,756 + Rru_A0314 0.41 -0.8
382,756 + Rru_A0314 0.41 -1.0
382,756 + Rru_A0314 0.41 +0.1
382,757 - Rru_A0314 0.41 -1.1
382,757 - Rru_A0314 0.41 -0.8
382,757 - Rru_A0314 0.41 -0.9
382,757 - Rru_A0314 0.41 +0.1
382,757 - Rru_A0314 0.41 +0.1
382,757 - Rru_A0314 0.41 +0.1
382,924 + Rru_A0314 0.52 +0.1
382,924 + Rru_A0314 0.52 +0.1
382,925 - Rru_A0314 0.52 +0.1
382,961 - Rru_A0314 0.55 -1.2
382,961 - Rru_A0314 0.55 +0.1
383,065 + Rru_A0314 0.62 -0.7
383,125 + Rru_A0314 0.66 +0.1
383,125 + Rru_A0314 0.66 +0.1
383,126 - Rru_A0314 0.66 +0.1
383,126 - Rru_A0314 0.66 -1.1

Or see this region's nucleotide sequence