Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0144 and Rru_A0145 are separated by 156 nucleotides Rru_A0145 and Rru_A0146 are separated by 109 nucleotides Rru_A0146 and Rru_A0147 are separated by 96 nucleotides
Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615
_A0144
Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380
_A0145
Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029
_A0146
Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778
_A0147
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.822 kb on - strand, within Rru_A0144 at 167.822 kb on - strand, within Rru_A0144 at 167.871 kb on + strand, within Rru_A0144 at 167.872 kb on - strand, within Rru_A0144 at 168.014 kb on + strand, within Rru_A0144 at 168.014 kb on + strand, within Rru_A0144 at 168.015 kb on - strand, within Rru_A0144 at 168.065 kb on + strand, within Rru_A0144 at 168.066 kb on - strand, within Rru_A0144 at 168.530 kb on + strand at 168.737 kb on - strand at 168.737 kb on - strand at 168.850 kb on + strand, within Rru_A0145 at 169.082 kb on + strand, within Rru_A0145 at 169.082 kb on + strand, within Rru_A0145 at 169.169 kb on + strand, within Rru_A0145 at 169.169 kb on + strand, within Rru_A0145 at 169.170 kb on - strand, within Rru_A0145 at 169.170 kb on - strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.219 kb on - strand, within Rru_A0145 at 169.219 kb on - strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145 at 170.084 kb on + strand at 170.085 kb on - strand at 170.301 kb on + strand, within Rru_A0147 at 170.302 kb on - strand, within Rru_A0147 at 170.302 kb on - strand, within Rru_A0147 at 170.302 kb on - strand, within Rru_A0147 at 170.302 kb on - strand, within Rru_A0147 at 170.344 kb on - strand, within Rru_A0147 at 170.344 kb on - strand, within Rru_A0147
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 167,821 + Rru_A0144 0.28 -0.8 167,821 + Rru_A0144 0.28 -1.2 167,821 + Rru_A0144 0.28 +0.1 167,821 + Rru_A0144 0.28 +0.1 167,822 - Rru_A0144 0.28 +0.1 167,822 - Rru_A0144 0.28 +0.1 167,871 + Rru_A0144 0.33 +0.1 167,872 - Rru_A0144 0.33 +0.1 168,014 + Rru_A0144 0.45 -0.9 168,014 + Rru_A0144 0.45 +0.1 168,015 - Rru_A0144 0.46 +0.1 168,065 + Rru_A0144 0.50 -1.2 168,066 - Rru_A0144 0.50 +0.1 168,530 + -1.6 168,737 - -1.1 168,737 - -0.9 168,850 + Rru_A0145 0.13 +0.1 169,082 + Rru_A0145 0.51 +0.1 169,082 + Rru_A0145 0.51 +0.1 169,169 + Rru_A0145 0.65 +0.1 169,169 + Rru_A0145 0.65 +0.1 169,170 - Rru_A0145 0.65 -0.9 169,170 - Rru_A0145 0.65 +0.1 169,218 + Rru_A0145 0.73 +0.1 169,218 + Rru_A0145 0.73 -1.2 169,218 + Rru_A0145 0.73 +0.1 169,218 + Rru_A0145 0.73 +0.1 169,219 - Rru_A0145 0.73 -1.2 169,219 - Rru_A0145 0.73 +0.1 169,220 + Rru_A0145 0.74 +0.1 169,220 + Rru_A0145 0.74 +0.1 169,220 + Rru_A0145 0.74 +0.1 169,220 + Rru_A0145 0.74 -1.5 169,220 + Rru_A0145 0.74 +0.1 169,221 - Rru_A0145 0.74 +0.1 169,221 - Rru_A0145 0.74 -1.3 169,221 - Rru_A0145 0.74 +0.1 170,084 + +0.1 170,085 - +0.1 170,301 + Rru_A0147 0.11 -1.6 170,302 - Rru_A0147 0.11 +0.1 170,302 - Rru_A0147 0.11 +0.1 170,302 - Rru_A0147 0.11 +0.1 170,302 - Rru_A0147 0.11 +0.1 170,344 - Rru_A0147 0.13 +0.1 170,344 - Rru_A0147 0.13 +0.1
Or see this region's nucleotide sequence