Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0114 and Rru_A0115 are separated by 75 nucleotides Rru_A0115 and Rru_A0116 overlap by 4 nucleotides Rru_A0116 and Rru_A0117 overlap by 4 nucleotides
Rru_A0114: Rru_A0114 - type II secretion system protein (NCBI), at 133,573 to 134,808
_A0114
Rru_A0115: Rru_A0115 - hypothetical protein (NCBI), at 134,884 to 136,362
_A0115
Rru_A0116: Rru_A0116 - hypothetical protein (NCBI), at 136,359 to 137,330
_A0116
Rru_A0117: Rru_A0117 - ABC transporter component (NCBI), at 137,327 to 138,064
_A0117
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.162 kb on + strand, within Rru_A0114 at 134.780 kb on - strand at 134.780 kb on - strand at 134.811 kb on - strand at 134.830 kb on - strand at 134.830 kb on - strand at 134.851 kb on - strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.861 kb on - strand at 134.861 kb on - strand at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 136.703 kb on + strand, within Rru_A0116 at 136.703 kb on + strand, within Rru_A0116 at 136.704 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.292 kb on + strand at 137.293 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 134,162 + Rru_A0114 0.48 +0.1 134,780 - +0.1 134,780 - +0.1 134,811 - +0.1 134,830 - +0.1 134,830 - -2.5 134,851 - -0.6 134,852 + +0.1 134,852 + +0.1 134,852 + +0.1 134,852 + +0.1 134,852 + -0.8 134,853 - -0.9 134,853 - +0.1 134,853 - +0.1 134,860 + +0.1 134,860 + +0.1 134,860 + +0.1 134,861 - -0.1 134,861 - -0.9 135,556 + Rru_A0115 0.45 +0.1 135,556 + Rru_A0115 0.45 +0.1 135,556 + Rru_A0115 0.45 +0.1 135,557 - Rru_A0115 0.46 +0.1 135,557 - Rru_A0115 0.46 +0.1 135,785 + Rru_A0115 0.61 +0.1 135,785 + Rru_A0115 0.61 +0.1 135,786 - Rru_A0115 0.61 +0.4 135,786 - Rru_A0115 0.61 -0.1 135,786 - Rru_A0115 0.61 -0.4 136,703 + Rru_A0116 0.35 -0.4 136,703 + Rru_A0116 0.35 -0.9 136,704 - Rru_A0116 0.35 +0.1 137,167 - Rru_A0116 0.83 -0.6 137,167 - Rru_A0116 0.83 -1.3 137,292 + +0.1 137,293 - +0.1 137,327 - +0.1 137,327 - +0.1 137,327 - +0.1
Or see this region's nucleotide sequence