Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0066

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0065 and Rru_A0066 are separated by 179 nucleotidesRru_A0066 and Rru_A0067 are separated by 2 nucleotidesRru_A0067 and Rru_A0068 overlap by 17 nucleotides Rru_A0065: Rru_A0065 - Squalene/phytoene synthase (NCBI), at 75,000 to 75,893 _A0065 Rru_A0066: Rru_A0066 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 76,073 to 78,394 _A0066 Rru_A0067: Rru_A0067 - Protein of unknown function DUF123 (NCBI), at 78,397 to 78,834 _A0067 Rru_A0068: Rru_A0068 - Alpha/beta hydrolase fold (NCBI), at 78,818 to 79,945 _A0068 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 75.933 kb on - strandat 75.933 kb on - strandat 75.979 kb on - strandat 76.072 kb on + strandat 76.072 kb on + strandat 76.073 kb on - strandat 76.073 kb on - strandat 76.073 kb on - strandat 76.628 kb on - strand, within Rru_A0066at 77.069 kb on + strand, within Rru_A0066at 77.069 kb on + strand, within Rru_A0066at 77.070 kb on - strand, within Rru_A0066at 77.070 kb on - strand, within Rru_A0066at 77.070 kb on - strand, within Rru_A0066at 77.182 kb on + strand, within Rru_A0066at 77.357 kb on - strand, within Rru_A0066at 77.571 kb on + strand, within Rru_A0066at 77.572 kb on - strand, within Rru_A0066at 77.597 kb on + strand, within Rru_A0066at 77.678 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.714 kb on - strand, within Rru_A0066at 77.714 kb on - strand, within Rru_A0066at 77.807 kb on + strand, within Rru_A0066at 77.807 kb on + strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.816 kb on + strand, within Rru_A0066at 77.817 kb on - strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.240 kb on - strandat 78.240 kb on - strandat 78.455 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.885 kb on + strandat 79.006 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.201 kb on - strand, within Rru_A0068at 79.284 kb on + strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.311 kb on + strand, within Rru_A0068at 79.383 kb on + strand, within Rru_A0068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
75,933 - -0.8
75,933 - +0.1
75,979 - +0.1
76,072 + -1.0
76,072 + -0.9
76,073 - -0.5
76,073 - +0.1
76,073 - -0.4
76,628 - Rru_A0066 0.24 +0.1
77,069 + Rru_A0066 0.43 +0.1
77,069 + Rru_A0066 0.43 +0.1
77,070 - Rru_A0066 0.43 -0.9
77,070 - Rru_A0066 0.43 +0.1
77,070 - Rru_A0066 0.43 -0.6
77,182 + Rru_A0066 0.48 +0.1
77,357 - Rru_A0066 0.55 +0.1
77,571 + Rru_A0066 0.65 +0.1
77,572 - Rru_A0066 0.65 +0.1
77,597 + Rru_A0066 0.66 +0.1
77,678 + Rru_A0066 0.69 +0.1
77,713 + Rru_A0066 0.71 +0.1
77,713 + Rru_A0066 0.71 +0.1
77,713 + Rru_A0066 0.71 -0.5
77,713 + Rru_A0066 0.71 -0.6
77,714 - Rru_A0066 0.71 -0.9
77,714 - Rru_A0066 0.71 -1.1
77,807 + Rru_A0066 0.75 -1.0
77,807 + Rru_A0066 0.75 +0.1
77,808 - Rru_A0066 0.75 -0.9
77,808 - Rru_A0066 0.75 +0.1
77,808 - Rru_A0066 0.75 +0.1
77,816 + Rru_A0066 0.75 +0.1
77,817 - Rru_A0066 0.75 +0.1
77,831 + Rru_A0066 0.76 -0.5
77,831 + Rru_A0066 0.76 -0.8
77,831 + Rru_A0066 0.76 -0.5
77,831 + Rru_A0066 0.76 +0.1
77,831 + Rru_A0066 0.76 +0.1
77,832 - Rru_A0066 0.76 +0.1
77,832 - Rru_A0066 0.76 +0.1
77,832 - Rru_A0066 0.76 +0.1
77,832 - Rru_A0066 0.76 +0.1
78,092 + Rru_A0066 0.87 -0.9
78,092 + Rru_A0066 0.87 +0.1
78,092 + Rru_A0066 0.87 -1.9
78,093 - Rru_A0066 0.87 +0.1
78,093 - Rru_A0066 0.87 -1.0
78,093 - Rru_A0066 0.87 +0.1
78,093 - Rru_A0066 0.87 +0.1
78,240 - +0.1
78,240 - -1.1
78,455 - Rru_A0067 0.13 -0.9
78,530 - Rru_A0067 0.30 -0.5
78,530 - Rru_A0067 0.30 -1.3
78,530 - Rru_A0067 0.30 +0.1
78,530 - Rru_A0067 0.30 +0.1
78,535 + Rru_A0067 0.32 +0.1
78,535 + Rru_A0067 0.32 -1.3
78,535 + Rru_A0067 0.32 -0.8
78,535 + Rru_A0067 0.32 +0.1
78,535 + Rru_A0067 0.32 +0.1
78,536 - Rru_A0067 0.32 +0.1
78,536 - Rru_A0067 0.32 +0.1
78,536 - Rru_A0067 0.32 +0.1
78,885 + -0.5
79,006 + Rru_A0068 0.17 -0.9
79,158 + Rru_A0068 0.30 +0.1
79,158 + Rru_A0068 0.30 -0.9
79,200 + Rru_A0068 0.34 -1.0
79,200 + Rru_A0068 0.34 -0.9
79,200 + Rru_A0068 0.34 +0.1
79,200 + Rru_A0068 0.34 +0.1
79,201 - Rru_A0068 0.34 -1.0
79,284 + Rru_A0068 0.41 -1.1
79,285 - Rru_A0068 0.41 -1.1
79,285 - Rru_A0068 0.41 +0.1
79,311 + Rru_A0068 0.44 -0.6
79,383 + Rru_A0068 0.50 +0.2

Or see this region's nucleotide sequence