Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF43423

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2733 and tRNA-Leu are separated by 283 nucleotidestRNA-Leu and DORF43423 are separated by 331 nucleotidesDORF43423 and paaK-3 are separated by 110 nucleotides DVU2733: DVU2733 - adenine specific DNA methyltransferase, putative (TIGR), at 2,833,587 to 2,834,336 DVU2733 DVU_tRNA-Leu-7: tRNA-Leu - tRNA with anticodon GAG for Leu (VIMSS-AUTO), at 2,834,620 to 2,834,706 tRNA-Leu DORF43423: DORF43423 - SEED: Uncharacterized protein conserved in archaea, at 2,835,038 to 2,836,108 DORF43423 DVU2735: paaK-3 - phenylacetate-coenzyme A ligase (TIGR), at 2,836,219 to 2,837,517 paaK-3 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2834.063 kb on + strand, within DVU2733at 2834.141 kb on + strand, within DVU2733at 2834.149 kb on - strand, within DVU2733at 2834.149 kb on - strand, within DVU2733at 2834.239 kb on - strand, within DVU2733at 2834.289 kb on + strandat 2834.289 kb on + strandat 2834.302 kb on + strandat 2834.333 kb on - strandat 2834.456 kb on - strandat 2834.501 kb on + strandat 2834.501 kb on + strandat 2834.501 kb on + strandat 2834.509 kb on - strandat 2834.817 kb on + strandat 2834.906 kb on - strandat 2834.936 kb on + strandat 2834.997 kb on + strandat 2835.031 kb on + strandat 2835.087 kb on + strandat 2835.301 kb on + strand, within DORF43423at 2835.301 kb on + strand, within DORF43423at 2835.309 kb on - strand, within DORF43423at 2835.327 kb on + strand, within DORF43423at 2835.384 kb on + strand, within DORF43423at 2835.400 kb on - strand, within DORF43423at 2835.487 kb on - strand, within DORF43423at 2835.578 kb on - strand, within DORF43423at 2835.593 kb on - strand, within DORF43423at 2835.617 kb on - strand, within DORF43423at 2835.627 kb on - strand, within DORF43423at 2835.692 kb on + strand, within DORF43423at 2835.702 kb on - strand, within DORF43423at 2835.748 kb on - strand, within DORF43423at 2835.769 kb on + strand, within DORF43423at 2835.824 kb on - strand, within DORF43423at 2835.826 kb on + strand, within DORF43423at 2835.973 kb on - strand, within DORF43423at 2836.002 kb on + strandat 2836.002 kb on + strandat 2836.080 kb on + strandat 2836.083 kb on - strandat 2836.111 kb on - strandat 2836.111 kb on - strandat 2836.113 kb on + strandat 2836.126 kb on + strandat 2836.195 kb on - strandat 2836.287 kb on + strandat 2836.287 kb on + strandat 2836.295 kb on - strandat 2836.295 kb on - strandat 2836.295 kb on - strandat 2836.303 kb on - strandat 2836.308 kb on - strandat 2836.363 kb on - strand, within paaK-3at 2836.373 kb on + strand, within paaK-3at 2836.434 kb on - strand, within paaK-3at 2836.445 kb on + strand, within paaK-3at 2836.445 kb on + strand, within paaK-3at 2836.481 kb on + strand, within paaK-3at 2836.488 kb on - strand, within paaK-3at 2836.488 kb on - strand, within paaK-3at 2836.489 kb on - strand, within paaK-3at 2836.511 kb on - strand, within paaK-3at 2836.539 kb on - strand, within paaK-3at 2836.576 kb on - strand, within paaK-3at 2836.595 kb on + strand, within paaK-3at 2836.621 kb on + strand, within paaK-3at 2836.637 kb on + strand, within paaK-3at 2836.695 kb on + strand, within paaK-3at 2836.703 kb on - strand, within paaK-3at 2836.742 kb on + strand, within paaK-3at 2836.750 kb on - strand, within paaK-3at 2836.756 kb on + strand, within paaK-3at 2836.760 kb on - strand, within paaK-3at 2836.851 kb on + strand, within paaK-3at 2836.854 kb on - strand, within paaK-3at 2836.903 kb on + strand, within paaK-3at 2836.913 kb on + strand, within paaK-3at 2836.953 kb on + strand, within paaK-3at 2837.027 kb on - strand, within paaK-3at 2837.061 kb on + strand, within paaK-3at 2837.061 kb on + strand, within paaK-3at 2837.066 kb on + strand, within paaK-3at 2837.066 kb on + strand, within paaK-3at 2837.070 kb on - strand, within paaK-3at 2837.100 kb on + strand, within paaK-3at 2837.103 kb on + strand, within paaK-3

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,834,063 + DVU2733 0.63 -0.2
2,834,141 + DVU2733 0.74 +0.2
2,834,149 - DVU2733 0.75 -4.4
2,834,149 - DVU2733 0.75 +0.5
2,834,239 - DVU2733 0.87 +0.8
2,834,289 + -2.7
2,834,289 + -3.6
2,834,302 + -0.4
2,834,333 - -0.3
2,834,456 - -0.2
2,834,501 + -2.2
2,834,501 + -0.1
2,834,501 + -3.5
2,834,509 - -0.7
2,834,817 + +1.9
2,834,906 - -0.1
2,834,936 + +0.4
2,834,997 + -2.7
2,835,031 + -0.5
2,835,087 + -3.7
2,835,301 + DORF43423 0.25 +0.4
2,835,301 + DORF43423 0.25 -3.4
2,835,309 - DORF43423 0.25 -0.1
2,835,327 + DORF43423 0.27 +0.3
2,835,384 + DORF43423 0.32 -2.9
2,835,400 - DORF43423 0.34 -0.0
2,835,487 - DORF43423 0.42 -0.4
2,835,578 - DORF43423 0.50 -0.2
2,835,593 - DORF43423 0.52 +0.1
2,835,617 - DORF43423 0.54 -0.9
2,835,627 - DORF43423 0.55 -0.4
2,835,692 + DORF43423 0.61 +0.9
2,835,702 - DORF43423 0.62 +0.0
2,835,748 - DORF43423 0.66 -0.6
2,835,769 + DORF43423 0.68 -0.1
2,835,824 - DORF43423 0.73 -3.3
2,835,826 + DORF43423 0.74 -1.8
2,835,973 - DORF43423 0.87 +0.2
2,836,002 + -3.7
2,836,002 + -0.2
2,836,080 + +0.2
2,836,083 - -0.2
2,836,111 - -3.0
2,836,111 - -0.3
2,836,113 + -0.6
2,836,126 + -3.9
2,836,195 - +0.6
2,836,287 + +1.1
2,836,287 + -0.2
2,836,295 - -0.1
2,836,295 - +0.8
2,836,295 - +0.3
2,836,303 - -2.9
2,836,308 - -0.0
2,836,363 - paaK-3 DVU2735 0.11 -0.1
2,836,373 + paaK-3 DVU2735 0.12 -0.5
2,836,434 - paaK-3 DVU2735 0.17 +0.1
2,836,445 + paaK-3 DVU2735 0.17 -0.1
2,836,445 + paaK-3 DVU2735 0.17 -2.1
2,836,481 + paaK-3 DVU2735 0.20 +0.9
2,836,488 - paaK-3 DVU2735 0.21 -0.0
2,836,488 - paaK-3 DVU2735 0.21 -0.3
2,836,489 - paaK-3 DVU2735 0.21 +0.0
2,836,511 - paaK-3 DVU2735 0.22 +1.1
2,836,539 - paaK-3 DVU2735 0.25 -2.6
2,836,576 - paaK-3 DVU2735 0.27 +0.4
2,836,595 + paaK-3 DVU2735 0.29 +0.7
2,836,621 + paaK-3 DVU2735 0.31 -4.1
2,836,637 + paaK-3 DVU2735 0.32 -0.0
2,836,695 + paaK-3 DVU2735 0.37 -0.2
2,836,703 - paaK-3 DVU2735 0.37 -0.1
2,836,742 + paaK-3 DVU2735 0.40 +2.1
2,836,750 - paaK-3 DVU2735 0.41 -2.6
2,836,756 + paaK-3 DVU2735 0.41 -0.2
2,836,760 - paaK-3 DVU2735 0.42 +0.1
2,836,851 + paaK-3 DVU2735 0.49 +0.0
2,836,854 - paaK-3 DVU2735 0.49 -0.6
2,836,903 + paaK-3 DVU2735 0.53 +1.4
2,836,913 + paaK-3 DVU2735 0.53 +0.1
2,836,953 + paaK-3 DVU2735 0.57 -2.4
2,837,027 - paaK-3 DVU2735 0.62 -0.1
2,837,061 + paaK-3 DVU2735 0.65 -0.1
2,837,061 + paaK-3 DVU2735 0.65 +1.1
2,837,066 + paaK-3 DVU2735 0.65 -3.5
2,837,066 + paaK-3 DVU2735 0.65 -0.2
2,837,070 - paaK-3 DVU2735 0.66 -3.0
2,837,100 + paaK-3 DVU2735 0.68 +0.3
2,837,103 + paaK-3 DVU2735 0.68 -0.0

Or see this region's nucleotide sequence