Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15410

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
3,401,730	+		LRK54_RS15405	0.40	-1.6
3,401,810	+		LRK54_RS15405	0.45	-1.6
3,401,810	+		LRK54_RS15405	0.45	+2.1
3,401,811	-		LRK54_RS15405	0.45	-0.6
3,401,811	-		LRK54_RS15405	0.45	-0.5
3,402,012	+		LRK54_RS15405	0.57	+0.1
3,402,012	+		LRK54_RS15405	0.57	-2.2
3,402,012	+		LRK54_RS15405	0.57	-0.6
3,402,012	+		LRK54_RS15405	0.57	-0.2
3,402,012	+		LRK54_RS15405	0.57	-1.2
3,402,012	+		LRK54_RS15405	0.57	+0.1
3,402,012	+		LRK54_RS15405	0.57	-0.3
3,402,012	+		LRK54_RS15405	0.57	-0.9
3,402,013	-		LRK54_RS15405	0.58	+0.6
3,402,013	-		LRK54_RS15405	0.58	+2.1
3,402,013	-		LRK54_RS15405	0.58	-0.2
3,402,013	-		LRK54_RS15405	0.58	-0.7
3,402,308	-		LRK54_RS15405	0.76	-0.6
3,402,555	-				+0.3
3,402,621	+				+2.9
3,402,621	+				-0.2
3,402,621	+				-0.9
3,402,621	+				-0.9
3,402,622	-				-1.9
3,402,622	-				+0.6
3,402,622	-				-0.0
3,402,622	-				-0.0
3,402,622	-				-0.7
3,402,622	-				-1.8
3,402,622	-				-2.6
3,402,622	-				-1.7
3,402,622	-				-0.9
3,402,622	-				+1.6
3,402,645	+				-0.6
3,402,645	+				+0.1
3,402,645	+				-0.0
3,402,645	+				+0.7
3,402,645	+				+0.1
3,402,645	+				-0.9
3,402,645	+				-2.5
3,402,645	+				-0.4
3,402,646	-				-0.7
3,402,646	-				+3.1
3,402,646	-				-0.1
3,402,646	-				+1.6
3,402,646	-				+0.8
3,402,646	-				+0.8
3,402,646	-				+1.8
3,402,646	-				+0.3
3,402,646	-				-0.7
3,402,646	-				-1.5
3,402,646	-				+2.1
3,402,646	-				-0.2
3,402,646	-				-0.7
3,402,646	-				-0.9
3,402,713	+				+1.1
3,402,713	+				+0.6
3,402,713	+				-0.9
3,402,713	+				-0.9
3,402,714	-				+0.8
3,402,714	-				-0.1
3,402,812	+				+0.6
3,402,812	+				-0.4
3,402,812	+				+0.2
3,402,812	+				-3.5
3,402,812	+				-1.3
3,402,812	+				+1.3
3,402,812	+				-0.3
3,402,812	+				+0.6
3,402,812	+				+0.8
3,402,812	+				-1.2
3,402,812	+				-0.0
3,402,812	+				-1.5
3,402,812	+				+0.3
3,402,812	+				+0.3
3,402,812	+				+0.1
3,402,812	+				+3.1
3,402,812	+				+0.8
3,402,812	+				-0.3
3,402,812	+				-0.4
3,402,813	-				+1.6
3,402,813	-				-3.4
3,402,813	-				-1.4
3,402,813	-				+1.6
3,402,813	-				-1.1
3,402,813	-				-1.3
3,402,813	-				+3.1
3,402,813	-				+2.1
3,402,813	-				+3.1
3,402,813	-				+0.8
3,402,815	+				-0.8
3,402,815	+				+1.4
3,402,815	+				-0.4
3,402,815	+				-0.7
3,402,815	+				+0.1
3,402,815	+				-0.8
3,402,815	+				+1.7
3,402,815	+				+0.7
3,402,815	+				+1.1
3,402,815	+				-1.4
3,402,815	+				+0.6
3,402,815	+				+2.4
3,402,815	+				-1.6
3,402,815	+				-0.4
3,402,815	+				-2.1
3,402,815	+				-0.2
3,402,815	+				-0.0
3,402,815	+				-1.5
3,402,816	-				-2.5
3,402,816	-				-0.2
3,402,816	-				-0.6
3,402,816	-				-2.9
3,402,816	-				-0.7
3,402,816	-				-0.9
3,402,816	-				-0.4
3,402,816	-				+1.6
3,402,816	-				-0.9
3,402,816	-				-0.4
3,402,854	+		LRK54_RS15410	0.10	-0.9
3,402,854	+		LRK54_RS15410	0.10	-0.8
3,402,854	+		LRK54_RS15410	0.10	+0.3
3,402,854	+		LRK54_RS15410	0.10	+0.6
3,402,854	+		LRK54_RS15410	0.10	-0.3
3,402,854	+		LRK54_RS15410	0.10	+0.8
3,402,855	-		LRK54_RS15410	0.10	-1.4
3,402,855	-		LRK54_RS15410	0.10	+0.1
3,402,855	-		LRK54_RS15410	0.10	+1.1
3,402,855	-		LRK54_RS15410	0.10	-2.1
3,402,855	-		LRK54_RS15410	0.10	-1.2
3,402,855	-		LRK54_RS15410	0.10	+0.7
3,402,855	-		LRK54_RS15410	0.10	+0.6
3,402,855	-		LRK54_RS15410	0.10	-1.3
3,402,855	-		LRK54_RS15410	0.10	+1.1
3,402,855	-		LRK54_RS15410	0.10	-0.1
3,402,855	-		LRK54_RS15410	0.10	+0.3
3,402,855	-		LRK54_RS15410	0.10	-0.7
3,402,857	+		LRK54_RS15410	0.10	+0.6
3,402,857	+		LRK54_RS15410	0.10	-1.4
3,402,857	+		LRK54_RS15410	0.10	-0.3
3,402,857	+		LRK54_RS15410	0.10	+1.1
3,402,857	+		LRK54_RS15410	0.10	-0.5
3,402,857	+		LRK54_RS15410	0.10	+1.6
3,402,858	-		LRK54_RS15410	0.10	-1.2
3,402,858	-		LRK54_RS15410	0.10	-1.5
3,402,858	-		LRK54_RS15410	0.10	+1.9
3,402,858	-		LRK54_RS15410	0.10	-0.6
3,402,858	-		LRK54_RS15410	0.10	+0.8
3,402,858	-		LRK54_RS15410	0.10	-0.0
3,402,858	-		LRK54_RS15410	0.10	-1.1
3,402,858	-		LRK54_RS15410	0.10	+0.3
3,403,100	+		LRK54_RS15410	0.26	+0.7
3,403,100	+		LRK54_RS15410	0.26	+0.9
3,403,100	+		LRK54_RS15410	0.26	+2.4
3,403,100	+		LRK54_RS15410	0.26	-2.9
3,403,100	+		LRK54_RS15410	0.26	-0.8
3,403,101	-		LRK54_RS15410	0.26	-1.6
3,403,101	-		LRK54_RS15410	0.26	-0.2
3,403,101	-		LRK54_RS15410	0.26	+0.6
3,403,101	-		LRK54_RS15410	0.26	-1.1
3,403,101	-		LRK54_RS15410	0.26	+0.6
3,403,101	-		LRK54_RS15410	0.26	-1.6
3,403,216	+		LRK54_RS15410	0.33	+0.8
3,403,217	+		LRK54_RS15410	0.33	+0.9
3,403,217	+		LRK54_RS15410	0.33	+1.1
3,403,217	+		LRK54_RS15410	0.33	+0.1
3,403,217	+		LRK54_RS15410	0.33	-0.0
3,403,217	+		LRK54_RS15410	0.33	-1.2
3,403,217	+		LRK54_RS15410	0.33	-0.0
3,403,217	+		LRK54_RS15410	0.33	-1.4
3,403,217	+		LRK54_RS15410	0.33	-0.6
3,403,217	+		LRK54_RS15410	0.33	-0.0
3,403,217	+		LRK54_RS15410	0.33	-3.4
3,403,217	+		LRK54_RS15410	0.33	-1.6
3,403,217	+		LRK54_RS15410	0.33	-2.5
3,403,217	+		LRK54_RS15410	0.33	+2.1
3,403,217	+		LRK54_RS15410	0.33	+1.1
3,403,217	+		LRK54_RS15410	0.33	+1.1
3,403,217	+		LRK54_RS15410	0.33	-0.3
3,403,217	+		LRK54_RS15410	0.33	-1.7
3,403,217	+		LRK54_RS15410	0.33	+0.3
3,403,217	+		LRK54_RS15410	0.33	-0.4
3,403,217	+		LRK54_RS15410	0.33	-0.0
3,403,217	+		LRK54_RS15410	0.33	-1.2
3,403,217	+		LRK54_RS15410	0.33	+1.4
3,403,217	+		LRK54_RS15410	0.33	-1.9
3,403,217	+		LRK54_RS15410	0.33	-0.9
3,403,217	+		LRK54_RS15410	0.33	-0.9
3,403,217	+		LRK54_RS15410	0.33	-0.1
3,403,217	+		LRK54_RS15410	0.33	+0.8
3,403,217	+		LRK54_RS15410	0.33	+0.3
3,403,218	-		LRK54_RS15410	0.33	-0.2
3,403,218	-		LRK54_RS15410	0.33	+2.1
3,403,218	-		LRK54_RS15410	0.33	+1.6
3,403,218	-		LRK54_RS15410	0.33	-1.1
3,403,218	-		LRK54_RS15410	0.33	-0.8
3,403,218	-		LRK54_RS15410	0.33	-2.1
3,403,218	-		LRK54_RS15410	0.33	-0.6
3,403,218	-		LRK54_RS15410	0.33	-1.6
3,403,218	-		LRK54_RS15410	0.33	+1.1
3,403,218	-		LRK54_RS15410	0.33	-0.4
3,403,218	-		LRK54_RS15410	0.33	-1.0
3,403,247	+		LRK54_RS15410	0.35	-1.4
3,403,247	+		LRK54_RS15410	0.35	-0.3
3,403,247	+		LRK54_RS15410	0.35	-0.7
3,403,247	+		LRK54_RS15410	0.35	-0.6
3,403,247	+		LRK54_RS15410	0.35	+0.3
3,403,247	+		LRK54_RS15410	0.35	+0.2
3,403,248	-		LRK54_RS15410	0.35	-0.4
3,403,248	-		LRK54_RS15410	0.35	-1.6
3,403,248	-		LRK54_RS15410	0.35	-3.1
3,403,248	-		LRK54_RS15410	0.35	+1.6
3,403,248	-		LRK54_RS15410	0.35	+1.1
3,403,248	-		LRK54_RS15410	0.35	-1.3
3,403,262	+		LRK54_RS15410	0.36	+1.6
3,403,262	+		LRK54_RS15410	0.36	-0.0
3,403,262	+		LRK54_RS15410	0.36	-1.6
3,403,262	+		LRK54_RS15410	0.36	-1.3
3,403,262	+		LRK54_RS15410	0.36	+1.1
3,403,262	+		LRK54_RS15410	0.36	+1.6
3,403,262	+		LRK54_RS15410	0.36	-0.6
3,403,262	+		LRK54_RS15410	0.36	+2.1
3,403,263	-		LRK54_RS15410	0.36	+1.6
3,403,263	-		LRK54_RS15410	0.36	+0.3
3,403,263	-		LRK54_RS15410	0.36	+0.3
3,403,263	-		LRK54_RS15410	0.36	-0.5
3,403,263	-		LRK54_RS15410	0.36	-1.8
3,403,343	+		LRK54_RS15410	0.41	-0.6
3,403,343	+		LRK54_RS15410	0.41	+1.1
3,403,343	+		LRK54_RS15410	0.41	-0.8
3,403,343	+		LRK54_RS15410	0.41	+0.1
3,403,343	+		LRK54_RS15410	0.41	+0.7
3,403,343	+		LRK54_RS15410	0.41	-0.9
3,403,343	+		LRK54_RS15410	0.41	-2.7
3,403,343	+		LRK54_RS15410	0.41	-1.4
3,403,343	+		LRK54_RS15410	0.41	+0.6
3,403,344	-		LRK54_RS15410	0.41	+1.3
3,403,344	-		LRK54_RS15410	0.41	+0.3
3,403,344	-		LRK54_RS15410	0.41	+2.1
3,403,344	-		LRK54_RS15410	0.41	+2.1
3,403,344	-		LRK54_RS15410	0.41	-1.3
3,403,344	-		LRK54_RS15410	0.41	-2.1
3,403,344	-		LRK54_RS15410	0.41	-1.6
3,403,344	-		LRK54_RS15410	0.41	-0.9
3,403,344	-		LRK54_RS15410	0.41	+3.1
3,403,344	-		LRK54_RS15410	0.41	-1.8
3,403,344	-		LRK54_RS15410	0.41	-0.7
3,403,344	-		LRK54_RS15410	0.41	+1.1
3,403,496	+		LRK54_RS15410	0.51	-0.3
3,403,496	+		LRK54_RS15410	0.51	+1.6
3,403,496	+		LRK54_RS15410	0.51	+0.8
3,403,496	+		LRK54_RS15410	0.51	-1.0
3,403,496	+		LRK54_RS15410	0.51	-0.0
3,403,496	+		LRK54_RS15410	0.51	-1.0
3,403,496	+		LRK54_RS15410	0.51	-0.4
3,403,496	+		LRK54_RS15410	0.51	-0.7
3,403,496	+		LRK54_RS15410	0.51	-0.3
3,403,496	+		LRK54_RS15410	0.51	-1.3
3,403,496	+		LRK54_RS15410	0.51	-1.3
3,403,496	+		LRK54_RS15410	0.51	+0.8
3,403,496	+		LRK54_RS15410	0.51	+1.6
3,403,496	+		LRK54_RS15410	0.51	-1.5
3,403,496	+		LRK54_RS15410	0.51	-0.6
3,403,497	-		LRK54_RS15410	0.51	+2.1
3,403,497	-		LRK54_RS15410	0.51	+0.8
3,403,497	-		LRK54_RS15410	0.51	-1.0
3,403,497	-		LRK54_RS15410	0.51	+0.8
3,403,497	-		LRK54_RS15410	0.51	+0.3
3,403,497	-		LRK54_RS15410	0.51	+1.6
3,403,497	-		LRK54_RS15410	0.51	-1.1
3,403,497	-		LRK54_RS15410	0.51	-0.0
3,403,497	-		LRK54_RS15410	0.51	-0.6
3,403,497	-		LRK54_RS15410	0.51	-2.3
3,403,497	-		LRK54_RS15410	0.51	-0.9
3,403,535	+		LRK54_RS15410	0.54	-0.9
3,403,535	+		LRK54_RS15410	0.54	-2.4
3,403,535	+		LRK54_RS15410	0.54	+0.3
3,403,535	+		LRK54_RS15410	0.54	+0.1
3,403,535	+		LRK54_RS15410	0.54	+0.1
3,403,535	+		LRK54_RS15410	0.54	-0.3
3,403,535	+		LRK54_RS15410	0.54	-1.4
3,403,535	+		LRK54_RS15410	0.54	-1.6
3,403,535	+		LRK54_RS15410	0.54	+0.1
3,403,535	+		LRK54_RS15410	0.54	-0.3
3,403,536	-		LRK54_RS15410	0.54	-0.6
3,403,536	-		LRK54_RS15410	0.54	-0.2
3,403,536	-		LRK54_RS15410	0.54	+0.6
3,403,536	-		LRK54_RS15410	0.54	-1.4
3,403,536	-		LRK54_RS15410	0.54	-0.6
3,403,566	-		LRK54_RS15410	0.56	-0.6
3,403,610	+		LRK54_RS15410	0.58	+0.3
3,403,610	+		LRK54_RS15410	0.58	-1.9
3,403,610	+		LRK54_RS15410	0.58	+0.1
3,403,611	-		LRK54_RS15410	0.59	-1.3
3,403,763	+		LRK54_RS15410	0.68	-1.0
3,403,763	+		LRK54_RS15410	0.68	+1.6
3,403,764	-		LRK54_RS15410	0.68	-1.1
3,403,878	-		LRK54_RS15410	0.76	-0.0
3,403,878	-		LRK54_RS15410	0.76	-3.3
3,404,027	+		LRK54_RS15410	0.85	-0.8
3,404,027	+		LRK54_RS15410	0.85	+0.8
3,404,027	+		LRK54_RS15410	0.85	-1.5
3,404,028	-		LRK54_RS15410	0.85	-2.2
3,404,028	-		LRK54_RS15410	0.85	+2.6
3,404,028	-		LRK54_RS15410	0.85	+1.1
3,404,028	-		LRK54_RS15410	0.85	-1.8
3,404,028	-		LRK54_RS15410	0.85	+1.0
3,404,162	+				-0.8
3,404,162	+				+0.4
3,404,162	+				-0.7
3,404,162	+				-1.2
3,404,162	+				-0.6
3,404,162	+				+0.0
3,404,162	+				+0.5
3,404,163	-				+0.8
3,404,163	-				-0.3
3,404,163	-				-0.5
3,404,163	-				-0.6
3,404,163	-				+0.8
3,404,163	-				+1.6
3,404,163	-				+0.3
3,404,163	-				+0.1
3,404,165	-				-2.7
3,404,174	+				+0.3
3,404,174	+				+0.8
3,404,174	+				+0.3
3,404,174	+				-1.3
3,404,174	+				-0.2
3,404,174	+				+0.1
3,404,174	+				-0.2
3,404,174	+				+3.1
3,404,174	+				+0.1
3,404,174	+				-2.4
3,404,174	+				+3.1
3,404,174	+				-1.1
3,404,174	+				+1.5
3,404,175	-				+0.5
3,404,175	-				+1.7
3,404,175	-				+1.1
3,404,175	-				-2.0
3,404,175	-				-0.0
3,404,175	-				+0.3
3,404,175	-				-1.3
3,404,175	-				-0.0
3,404,175	-				+1.5
3,404,175	-				+0.7
3,404,186	+				-1.3
3,404,186	+				-2.1
3,404,186	+				-2.2
3,404,186	+				+1.5
3,404,186	+				+0.8
3,404,186	+				-0.0
3,404,186	+				-0.7
3,404,186	+				+0.8
3,404,186	+				+1.1
3,404,186	+				+2.1
3,404,186	+				-2.1
3,404,186	+				-0.0
3,404,186	+				-0.5
3,404,186	+				-2.2
3,404,186	+				+0.8
3,404,186	+				+3.1
3,404,186	+				+0.0
3,404,186	+				-1.6
3,404,186	+				-2.1
3,404,186	+				-1.5
3,404,187	-				-0.4
3,404,187	-				-1.6
3,404,187	-				-1.2
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3,404,187	-				-0.3
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3,404,519	+		LRK54_RS15415	0.21	-1.1
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3,404,520	-		LRK54_RS15415	0.21	+2.1
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3,404,581	+		LRK54_RS15415	0.26	-2.1
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3,404,581	+		LRK54_RS15415	0.26	+1.1
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3,404,582	-		LRK54_RS15415	0.26	+4.1
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3,404,582	-		LRK54_RS15415	0.26	+1.1
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3,404,625	-		LRK54_RS15415	0.30	+0.3
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3,404,628	-		LRK54_RS15415	0.30	+3.1
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3,404,628	-		LRK54_RS15415	0.30	-2.1
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3,404,735	+		LRK54_RS15415	0.39	-0.1
3,404,735	+		LRK54_RS15415	0.39	+3.1
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3,404,741	+		LRK54_RS15415	0.40	-3.0
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3,404,876	+		LRK54_RS15415	0.51	+0.1
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3,404,966	+		LRK54_RS15415	0.59	+0.1
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