Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12960

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS12955 and LRK54_RS12960 overlap by 4 nucleotidesLRK54_RS12960 and LRK54_RS12965 are separated by 52 nucleotidesLRK54_RS12965 and LRK54_RS12970 are separated by 113 nucleotides LRK54_RS12955: LRK54_RS12955 - AI-2E family transporter, at 2,894,230 to 2,895,399 _RS12955 LRK54_RS12960: LRK54_RS12960 - DnaA regulatory inactivator Hda, at 2,895,396 to 2,896,094 _RS12960 LRK54_RS12965: LRK54_RS12965 - inositol monophosphatase, at 2,896,147 to 2,896,950 _RS12965 LRK54_RS12970: LRK54_RS12970 - RNA methyltransferase, at 2,897,064 to 2,897,822 _RS12970 Position (kb) 2895 2896 2897Strain fitness (log2 ratio) -2 -1 0 1 2at 2894.740 kb on + strand, within LRK54_RS12955at 2894.740 kb on + strand, within LRK54_RS12955at 2894.740 kb on + strand, within LRK54_RS12955at 2894.740 kb on + strand, within LRK54_RS12955at 2894.740 kb on + strand, within LRK54_RS12955at 2894.740 kb on + strand, within LRK54_RS12955at 2894.899 kb on + strand, within LRK54_RS12955at 2894.899 kb on + strand, within LRK54_RS12955at 2894.980 kb on + strand, within LRK54_RS12955at 2895.100 kb on + strand, within LRK54_RS12955at 2895.100 kb on + strand, within LRK54_RS12955at 2895.250 kb on + strand, within LRK54_RS12955at 2895.283 kb on + strandat 2896.993 kb on + strandat 2896.993 kb on + strandat 2896.993 kb on + strandat 2896.993 kb on + strandat 2896.994 kb on - strandat 2896.994 kb on - strandat 2896.994 kb on - strandat 2897.027 kb on + strandat 2897.027 kb on + strandat 2897.027 kb on + strandat 2897.027 kb on + strandat 2897.027 kb on + strandat 2897.028 kb on - strandat 2897.028 kb on - strandat 2897.028 kb on - strandat 2897.028 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
remove
2,894,740 + LRK54_RS12955 0.44 -1.2
2,894,740 + LRK54_RS12955 0.44 +0.6
2,894,740 + LRK54_RS12955 0.44 -0.8
2,894,740 + LRK54_RS12955 0.44 -1.2
2,894,740 + LRK54_RS12955 0.44 -2.5
2,894,740 + LRK54_RS12955 0.44 +2.2
2,894,899 + LRK54_RS12955 0.57 -2.2
2,894,899 + LRK54_RS12955 0.57 +1.6
2,894,980 + LRK54_RS12955 0.64 +1.0
2,895,100 + LRK54_RS12955 0.74 +0.2
2,895,100 + LRK54_RS12955 0.74 +0.3
2,895,250 + LRK54_RS12955 0.87 -2.1
2,895,283 + +1.2
2,896,993 + +0.6
2,896,993 + -0.9
2,896,993 + -0.4
2,896,993 + +1.3
2,896,994 - +1.6
2,896,994 - -0.3
2,896,994 - +0.6
2,897,027 + -0.0
2,897,027 + -0.4
2,897,027 + -1.2
2,897,027 + +1.2
2,897,027 + -0.6
2,897,028 - +0.6
2,897,028 - -0.5
2,897,028 - -1.6
2,897,028 - -1.0

Or see this region's nucleotide sequence