Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10910

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS10905 and LRK54_RS10910 are separated by 218 nucleotidesLRK54_RS10910 and LRK54_RS10915 are separated by 187 nucleotidesLRK54_RS10915 and LRK54_RS10920 are separated by 382 nucleotides LRK54_RS10905: LRK54_RS10905 - glutamate--cysteine ligase, at 2,411,895 to 2,413,262 _RS10905 LRK54_RS10910: LRK54_RS10910 - transcription termination factor Rho, at 2,413,481 to 2,415,280 _RS10910 LRK54_RS10915: LRK54_RS10915 - thioredoxin TrxA, at 2,415,468 to 2,415,794 _RS10915 LRK54_RS10920: LRK54_RS10920 - DEAD/DEAH box helicase, at 2,416,177 to 2,417,925 _RS10920 Position (kb) 2413 2414 2415 2416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 2413.292 kb on + strandat 2413.292 kb on + strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2415.380 kb on + strandat 2415.380 kb on + strandat 2415.380 kb on + strandat 2415.380 kb on + strandat 2415.380 kb on + strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.381 kb on - strandat 2415.402 kb on + strandat 2415.402 kb on + strandat 2415.402 kb on + strandat 2415.403 kb on - strandat 2415.403 kb on - strandat 2415.403 kb on - strandat 2415.403 kb on - strandat 2415.897 kb on + strandat 2415.897 kb on + strandat 2415.897 kb on + strandat 2415.897 kb on + strandat 2415.897 kb on + strandat 2415.898 kb on - strandat 2415.898 kb on - strandat 2415.898 kb on - strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.176 kb on + strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.177 kb on - strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.190 kb on + strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strandat 2416.191 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
remove
2,413,292 + -0.4
2,413,292 + +1.6
2,413,293 - +0.3
2,413,293 - -0.0
2,413,293 - +0.3
2,413,293 - +0.9
2,413,293 - +2.3
2,413,293 - +0.2
2,415,380 + +1.2
2,415,380 + +0.6
2,415,380 + +1.6
2,415,380 + +1.2
2,415,380 + +1.6
2,415,381 - -1.1
2,415,381 - -0.5
2,415,381 - -0.8
2,415,381 - +1.2
2,415,381 - -1.3
2,415,381 - -0.6
2,415,381 - -2.0
2,415,381 - -1.9
2,415,381 - -1.0
2,415,381 - -2.3
2,415,381 - +0.3
2,415,381 - +1.2
2,415,381 - -0.6
2,415,381 - -0.6
2,415,381 - -1.5
2,415,402 + +0.8
2,415,402 + -0.8
2,415,402 + +1.6
2,415,403 - -0.6
2,415,403 - -0.9
2,415,403 - +0.4
2,415,403 - -1.3
2,415,897 + +2.2
2,415,897 + -1.4
2,415,897 + -2.6
2,415,897 + -0.9
2,415,897 + -0.2
2,415,898 - -0.0
2,415,898 - +9.6
2,415,898 - +1.8
2,416,176 + +3.2
2,416,176 + +2.2
2,416,176 + +0.2
2,416,176 + -0.8
2,416,176 + -0.3
2,416,176 + +1.3
2,416,176 + +0.4
2,416,176 + +0.5
2,416,176 + -0.9
2,416,176 + -0.9
2,416,176 + +0.2
2,416,176 + -0.0
2,416,176 + +0.5
2,416,176 + +1.2
2,416,176 + -2.2
2,416,176 + -0.4
2,416,176 + +2.2
2,416,176 + -0.7
2,416,176 + -0.7
2,416,176 + -1.3
2,416,176 + -1.6
2,416,176 + -1.2
2,416,176 + -0.2
2,416,176 + +0.3
2,416,176 + -3.0
2,416,176 + +1.2
2,416,176 + -0.3
2,416,176 + +0.3
2,416,176 + -0.8
2,416,176 + +0.6
2,416,176 + -0.4
2,416,176 + -0.2
2,416,176 + -0.3
2,416,176 + -1.5
2,416,176 + -2.2
2,416,176 + +0.8
2,416,176 + +0.1
2,416,176 + -1.4
2,416,176 + +1.2
2,416,176 + +0.8
2,416,176 + +0.6
2,416,176 + +1.3
2,416,177 - +0.2
2,416,177 - +4.2
2,416,177 - -1.8
2,416,177 - -2.1
2,416,177 - -1.2
2,416,177 - -2.0
2,416,177 - -1.7
2,416,177 - +2.2
2,416,177 - -0.9
2,416,177 - +0.4
2,416,177 - -0.9
2,416,177 - -2.3
2,416,177 - +0.6
2,416,177 - -3.3
2,416,177 - -0.8
2,416,177 - +0.2
2,416,177 - -1.5
2,416,177 - +0.3
2,416,177 - +0.3
2,416,177 - -0.8
2,416,177 - +0.3
2,416,177 - +1.3
2,416,177 - -1.5
2,416,177 - -0.2
2,416,177 - -0.2
2,416,177 - +0.6
2,416,177 - +1.8
2,416,177 - +1.2
2,416,177 - -0.6
2,416,177 - -2.5
2,416,177 - +0.3
2,416,177 - -0.9
2,416,177 - +1.3
2,416,177 - +0.6
2,416,177 - -1.6
2,416,177 - -0.5
2,416,177 - +0.9
2,416,190 + +1.6
2,416,190 + -1.3
2,416,190 + -0.7
2,416,190 + -0.8
2,416,190 + -2.1
2,416,190 + +0.5
2,416,190 + -1.8
2,416,190 + +3.2
2,416,190 + -0.6
2,416,190 + -0.5
2,416,190 + -2.1
2,416,190 + +1.4
2,416,190 + +0.2
2,416,190 + -0.3
2,416,191 - -2.2
2,416,191 - +0.8
2,416,191 - +0.3
2,416,191 - +0.3
2,416,191 - +0.6
2,416,191 - -1.7
2,416,191 - -0.4
2,416,191 - -2.4
2,416,191 - -1.3
2,416,191 - -0.4
2,416,191 - -0.8
2,416,191 - -0.3

Or see this region's nucleotide sequence