Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09385

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
2,054,856	+		LRK54_RS09380	0.62	-1.7
2,054,856	+		LRK54_RS09380	0.62	-1.0
2,054,856	+		LRK54_RS09380	0.62	+0.7
2,054,856	+		LRK54_RS09380	0.62	+0.6
2,054,856	+		LRK54_RS09380	0.62	-0.7
2,054,857	-		LRK54_RS09380	0.62	-0.9
2,054,857	-		LRK54_RS09380	0.62	+3.2
2,054,879	+		LRK54_RS09380	0.63	-2.2
2,054,879	+		LRK54_RS09380	0.63	-1.4
2,054,879	+		LRK54_RS09380	0.63	-0.2
2,054,880	-		LRK54_RS09380	0.64	-1.5
2,054,880	-		LRK54_RS09380	0.64	-0.4
2,054,880	-		LRK54_RS09380	0.64	-0.2
2,054,880	-		LRK54_RS09380	0.64	+0.2
2,054,904	+		LRK54_RS09380	0.65	+2.6
2,054,904	+		LRK54_RS09380	0.65	-1.0
2,054,905	-		LRK54_RS09380	0.65	-1.4
2,054,908	-		LRK54_RS09380	0.65	-1.0
2,054,908	-		LRK54_RS09380	0.65	+0.9
2,054,908	-		LRK54_RS09380	0.65	+1.0
2,055,072	+		LRK54_RS09380	0.73	+0.9
2,055,072	+		LRK54_RS09380	0.73	+1.1
2,055,072	+		LRK54_RS09380	0.73	-1.0
2,055,072	+		LRK54_RS09380	0.73	-0.1
2,055,073	-		LRK54_RS09380	0.73	+0.4
2,055,073	-		LRK54_RS09380	0.73	+0.6
2,055,073	-		LRK54_RS09380	0.73	-1.3
2,055,073	-		LRK54_RS09380	0.73	-2.6
2,055,073	-		LRK54_RS09380	0.73	-3.1
2,055,073	-		LRK54_RS09380	0.73	-1.7
2,055,073	-		LRK54_RS09380	0.73	-1.2
2,055,109	+		LRK54_RS09380	0.74	-1.4
2,055,110	-		LRK54_RS09380	0.74	-0.1
2,055,110	-		LRK54_RS09380	0.74	-1.5
2,055,110	-		LRK54_RS09380	0.74	-0.4
2,055,115	+		LRK54_RS09380	0.75	-0.2
2,055,172	+		LRK54_RS09380	0.77	-2.0
2,055,172	+		LRK54_RS09380	0.77	+1.6
2,055,191	+		LRK54_RS09380	0.78	+0.1
2,055,192	-		LRK54_RS09380	0.78	-0.4
2,055,214	+		LRK54_RS09380	0.79	-2.4
2,055,215	-		LRK54_RS09380	0.79	-1.1
2,055,219	+		LRK54_RS09380	0.80	+0.2
2,055,219	+		LRK54_RS09380	0.80	-0.8
2,055,228	+		LRK54_RS09380	0.80	+0.2
2,055,228	+		LRK54_RS09380	0.80	+1.6
2,055,229	-		LRK54_RS09380	0.80	+0.4
2,055,229	-		LRK54_RS09380	0.80	+1.6
2,055,229	-		LRK54_RS09380	0.80	+0.6
2,055,262	+		LRK54_RS09380	0.82	-3.0
2,055,270	+		LRK54_RS09380	0.82	-2.0
2,055,330	+		LRK54_RS09380	0.85	-0.3
2,055,330	+		LRK54_RS09380	0.85	-0.3
2,055,330	+		LRK54_RS09380	0.85	+0.4
2,055,331	-		LRK54_RS09380	0.85	-2.0
2,055,331	-		LRK54_RS09380	0.85	+0.0
2,055,331	-		LRK54_RS09380	0.85	+0.4
2,055,331	-		LRK54_RS09380	0.85	-1.8
2,055,384	+		LRK54_RS09380	0.87	-1.9
2,055,384	+		LRK54_RS09380	0.87	+1.2
2,055,384	+		LRK54_RS09380	0.87	+0.4
2,055,384	+		LRK54_RS09380	0.87	+0.6
2,055,384	+		LRK54_RS09380	0.87	-2.6
2,055,385	-		LRK54_RS09380	0.88	-0.1
2,055,385	-		LRK54_RS09380	0.88	-1.2
2,055,430	+		LRK54_RS09380	0.90	-1.7
2,055,441	+				-0.7
2,055,441	+				-2.0
2,055,441	+				-1.7
2,055,441	+				-0.4
2,055,441	+				-1.8
2,055,441	+				-0.8
2,055,441	+				-0.5
2,055,441	+				-0.4
2,055,441	+				+1.6
2,055,441	+				+3.2
2,055,441	+				-0.4
2,055,441	+				-0.6
2,055,441	+				+1.2
2,055,441	+				-0.7
2,055,441	+				-1.3
2,055,441	+				-0.4
2,055,441	+				+1.0
2,055,441	+				+0.4
2,055,441	+				+0.4
2,055,442	-				-1.4
2,055,442	-				-1.0
2,055,442	-				+0.2
2,055,442	-				+1.6
2,055,442	-				-2.3
2,055,442	-				+0.7
2,055,442	-				-2.2
2,055,442	-				-0.1
2,055,442	-				+1.2
2,055,442	-				-2.5
2,055,442	-				-0.3
2,055,442	-				-0.9
2,055,442	-				-1.3
2,055,442	-				-1.3
2,055,442	-				+0.9
2,055,442	-				-0.7
2,055,442	-				+0.4
2,055,442	-				+0.2
2,055,442	-				-1.5
2,055,445	+				+0.6
2,055,445	+				-2.7
2,055,445	+				+2.2
2,055,445	+				+0.6
2,055,445	+				-0.0
2,055,445	+				-0.6
2,055,446	-				-1.6
2,055,446	-				-0.7
2,055,446	-				-1.8
2,055,499	-				-0.0
2,055,499	-				-1.4
2,055,499	-				-1.8
2,055,540	+				+1.4
2,055,573	+				+1.0
2,055,573	+				+1.6
2,055,574	-				-0.3
2,055,574	-				-0.4
2,055,574	-				+0.4
2,055,750	+				+0.1
2,055,750	+				+1.8
2,055,751	-				-1.4
2,055,751	-				-0.8
2,055,751	-				-0.7
2,055,751	-				-1.2
2,055,751	-				-1.9
2,055,797	+		LRK54_RS09385	0.30	-1.5
2,055,797	+		LRK54_RS09385	0.30	+0.4
2,055,798	-		LRK54_RS09385	0.30	-1.0
2,055,890	+		LRK54_RS09385	0.85	+1.6
2,055,921	+				-1.2
2,055,922	-				-0.6
2,055,983	+				-0.5
2,055,984	-				+0.0
2,055,984	-				-1.3
2,055,984	-				+0.1
2,055,989	-				+0.4
2,055,989	-				+1.2
2,055,989	-				+0.5
2,056,015	+				-0.6
2,056,015	+				+0.0
2,056,015	+				+0.9
2,056,015	+				-0.4
2,056,016	-				-0.6
2,056,016	-				-2.1
2,056,061	+				-1.1
2,056,062	-				-2.1
2,056,062	-				-0.1
2,056,063	+				-1.6
2,056,063	+				-0.3
2,056,063	+				+3.2
2,056,063	+				+0.5
2,056,063	+				+0.6
2,056,063	+				-1.9
2,056,063	+				-0.3
2,056,063	+				-2.0
2,056,063	+				+0.2
2,056,063	+				+0.9
2,056,063	+				-1.2
2,056,064	-				-0.1
2,056,064	-				-1.0
2,056,064	-				-1.6
2,056,064	-				-0.7
2,056,064	-				-1.8
2,056,064	-				-0.3
2,056,064	-				-0.1
2,056,064	-				-1.6
2,056,064	-				-3.3
2,056,064	-				+1.2
2,056,081	+				+1.8
2,056,081	+				-0.2
2,056,081	+				-0.1
2,056,082	-				-1.4
2,056,207	+		LRK54_RS09390	0.18	+0.6
2,056,207	+		LRK54_RS09390	0.18	-0.9
2,056,207	+		LRK54_RS09390	0.18	-1.3
2,056,207	+		LRK54_RS09390	0.18	-0.3
2,056,207	+		LRK54_RS09390	0.18	-1.1
2,056,208	-		LRK54_RS09390	0.19	-1.0
2,056,208	-		LRK54_RS09390	0.19	+1.2
2,056,342	+		LRK54_RS09390	0.42	+3.2
2,056,343	-		LRK54_RS09390	0.42	-1.8
2,056,402	-		LRK54_RS09390	0.52	-0.1
2,056,412	+		LRK54_RS09390	0.54	-0.7
2,056,412	+		LRK54_RS09390	0.54	+0.8
2,056,518	+		LRK54_RS09390	0.72	+0.4
2,056,518	+		LRK54_RS09390	0.72	-2.7
2,056,518	+		LRK54_RS09390	0.72	-0.2
2,056,518	+		LRK54_RS09390	0.72	-0.6
2,056,520	+		LRK54_RS09390	0.72	-1.2
2,056,520	+		LRK54_RS09390	0.72	-1.9
2,056,520	+		LRK54_RS09390	0.72	+3.2
2,056,520	+		LRK54_RS09390	0.72	-1.5
2,056,520	+		LRK54_RS09390	0.72	+0.3
2,056,520	+		LRK54_RS09390	0.72	-1.8
2,056,521	-		LRK54_RS09390	0.72	+1.6
2,056,521	-		LRK54_RS09390	0.72	-2.1
2,056,521	-		LRK54_RS09390	0.72	+0.0
2,056,521	-		LRK54_RS09390	0.72	+0.8
2,056,535	+		LRK54_RS09390	0.75	+0.4
2,056,535	+		LRK54_RS09390	0.75	+0.9
2,056,535	+		LRK54_RS09390	0.75	-1.5
2,056,535	+		LRK54_RS09390	0.75	-1.4
2,056,535	+		LRK54_RS09390	0.75	+0.9
2,056,536	-		LRK54_RS09390	0.75	-1.7
2,056,536	-		LRK54_RS09390	0.75	+1.6
2,056,536	-		LRK54_RS09390	0.75	+0.7
2,056,536	-		LRK54_RS09390	0.75	-1.4
2,056,536	-		LRK54_RS09390	0.75	-0.4
2,056,536	-		LRK54_RS09390	0.75	-0.6
2,056,536	-		LRK54_RS09390	0.75	-0.9
2,056,537	+		LRK54_RS09390	0.75	-3.2
2,056,537	+		LRK54_RS09390	0.75	-1.0
2,056,537	+		LRK54_RS09390	0.75	+0.5
2,056,537	+		LRK54_RS09390	0.75	-0.1
2,056,537	+		LRK54_RS09390	0.75	-1.5
2,056,537	+		LRK54_RS09390	0.75	-0.4
2,056,537	+		LRK54_RS09390	0.75	-1.0
2,056,537	+		LRK54_RS09390	0.75	-2.1
2,056,538	-		LRK54_RS09390	0.75	-0.1
2,056,538	-		LRK54_RS09390	0.75	-2.4
2,056,538	-		LRK54_RS09390	0.75	+1.2
2,056,538	-		LRK54_RS09390	0.75	+0.4
2,056,551	+		LRK54_RS09390	0.77	-1.7
2,056,551	+		LRK54_RS09390	0.77	-2.6
2,056,551	+		LRK54_RS09390	0.77	-1.8
2,056,551	+		LRK54_RS09390	0.77	-1.8
2,056,552	-		LRK54_RS09390	0.77	-1.7
2,056,552	-		LRK54_RS09390	0.77	+0.1
2,056,567	+		LRK54_RS09390	0.80	+0.9
2,056,567	+		LRK54_RS09390	0.80	-3.7
2,056,567	+		LRK54_RS09390	0.80	+0.6
2,056,567	+		LRK54_RS09390	0.80	-2.4
2,056,567	+		LRK54_RS09390	0.80	+0.1
2,056,568	-		LRK54_RS09390	0.80	+0.9
2,056,568	-		LRK54_RS09390	0.80	+1.3
2,056,568	-		LRK54_RS09390	0.80	+1.6
2,056,568	-		LRK54_RS09390	0.80	-0.0
2,056,568	-		LRK54_RS09390	0.80	-0.7
2,056,595	+		LRK54_RS09390	0.85	+0.3
2,056,595	+		LRK54_RS09390	0.85	+2.5
2,056,596	-		LRK54_RS09390	0.85	-1.5
2,056,596	-		LRK54_RS09390	0.85	+2.2
2,056,596	-		LRK54_RS09390	0.85	-0.3
2,056,596	-		LRK54_RS09390	0.85	-0.6
2,056,596	-		LRK54_RS09390	0.85	+1.6
2,056,596	-		LRK54_RS09390	0.85	-1.4
2,056,596	-		LRK54_RS09390	0.85	-0.1
2,056,596	-		LRK54_RS09390	0.85	-1.1
2,056,643	+				-0.2
2,056,643	+				-1.6
2,056,644	-				-1.6
2,056,644	-				+1.2
2,056,644	-				-0.7
2,056,644	-				-0.8
2,056,647	+				-0.7
2,056,647	+				+1.6
2,056,647	+				-0.3
2,056,647	+				-1.0
2,056,647	+				-0.1
2,056,647	+				-2.3
2,056,647	+				-1.3
2,056,648	-				-1.9
2,056,648	-				+0.1
2,056,648	-				-0.3
2,056,648	-				-0.5
2,056,681	+				+0.6
2,056,681	+				-1.6
2,056,681	+				+0.6
2,056,681	+				+0.4
2,056,681	+				-1.3
2,056,681	+				-0.7
2,056,681	+				-0.3
2,056,681	+				-0.7
2,056,681	+				-0.7
2,056,682	-				+3.6
2,056,682	-				-1.5
2,056,682	-				-1.7
2,056,682	-				-3.6
2,056,682	-				-0.6
2,056,682	-				+0.6
2,056,682	-				-2.0
2,056,682	-				-1.0
2,056,682	-				-2.1
2,056,682	-				+0.2
2,056,682	-				-1.7
2,056,685	+				-0.3
2,056,685	+				-1.5
2,056,726	-				-1.2
2,056,726	-				+0.6