Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09005

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,959,941	+		LRK54_RS09000	0.21	-1.0
1,959,941	+		LRK54_RS09000	0.21	-0.1
1,959,941	+		LRK54_RS09000	0.21	+1.6
1,960,065	-		LRK54_RS09000	0.31	-0.1
1,960,125	+		LRK54_RS09000	0.36	-0.5
1,960,125	+		LRK54_RS09000	0.36	-1.0
1,960,126	-		LRK54_RS09000	0.36	+0.4
1,960,126	-		LRK54_RS09000	0.36	+0.6
1,960,126	-		LRK54_RS09000	0.36	-0.1
1,960,126	-		LRK54_RS09000	0.36	-0.2
1,960,126	-		LRK54_RS09000	0.36	-2.1
1,960,126	-		LRK54_RS09000	0.36	-0.7
1,960,126	-		LRK54_RS09000	0.36	+1.6
1,960,162	+		LRK54_RS09000	0.39	-0.2
1,960,206	-		LRK54_RS09000	0.43	-1.0
1,960,226	+		LRK54_RS09000	0.44	+0.6
1,960,226	+		LRK54_RS09000	0.44	+1.6
1,960,226	+		LRK54_RS09000	0.44	+0.4
1,960,227	-		LRK54_RS09000	0.44	+0.6
1,960,244	+		LRK54_RS09000	0.46	+0.2
1,960,244	+		LRK54_RS09000	0.46	+0.6
1,960,245	-		LRK54_RS09000	0.46	-0.7
1,960,245	-		LRK54_RS09000	0.46	-1.8
1,960,332	+		LRK54_RS09000	0.53	-0.4
1,960,332	+		LRK54_RS09000	0.53	+0.2
1,960,332	+		LRK54_RS09000	0.53	-0.9
1,960,396	+		LRK54_RS09000	0.58	+0.4
1,960,496	+		LRK54_RS09000	0.67	-1.4
1,960,496	+		LRK54_RS09000	0.67	-0.8
1,960,496	+		LRK54_RS09000	0.67	+0.1
1,960,497	-		LRK54_RS09000	0.67	-0.5
1,960,581	+		LRK54_RS09000	0.74	-2.5
1,960,581	+		LRK54_RS09000	0.74	-2.2
1,960,581	+		LRK54_RS09000	0.74	+0.6
1,960,582	-		LRK54_RS09000	0.74	+0.6
1,960,617	+		LRK54_RS09000	0.77	+0.2
1,960,617	+		LRK54_RS09000	0.77	-1.9
1,960,617	+		LRK54_RS09000	0.77	+0.2
1,960,617	+		LRK54_RS09000	0.77	-0.7
1,960,617	+		LRK54_RS09000	0.77	+0.1
1,960,618	-		LRK54_RS09000	0.77	-1.5
1,960,618	-		LRK54_RS09000	0.77	+0.4
1,960,618	-		LRK54_RS09000	0.77	+3.2
1,960,618	-		LRK54_RS09000	0.77	-1.0
1,960,618	-		LRK54_RS09000	0.77	+0.2
1,960,646	+		LRK54_RS09000	0.79	+1.6
1,960,646	+		LRK54_RS09000	0.79	-0.4
1,960,646	+		LRK54_RS09000	0.79	-0.5
1,960,646	+		LRK54_RS09000	0.79	+0.9
1,960,646	+		LRK54_RS09000	0.79	-1.8
1,960,647	-		LRK54_RS09000	0.79	-1.7
1,960,647	-		LRK54_RS09000	0.79	-0.1
1,960,647	-		LRK54_RS09000	0.79	-1.1
1,960,647	-		LRK54_RS09000	0.79	+0.3
1,960,647	-		LRK54_RS09000	0.79	-0.8
1,960,685	+		LRK54_RS09000	0.82	-1.9
1,960,685	+		LRK54_RS09000	0.82	+1.2
1,960,685	+		LRK54_RS09000	0.82	-0.9
1,960,686	-		LRK54_RS09000	0.82	-0.8
1,960,686	-		LRK54_RS09000	0.82	-1.4
1,960,716	+		LRK54_RS09000	0.85	-1.4
1,960,716	+		LRK54_RS09000	0.85	+1.6
1,960,716	+		LRK54_RS09000	0.85	-0.6
1,960,717	-		LRK54_RS09000	0.85	-1.9
1,960,717	-		LRK54_RS09000	0.85	+1.2
1,960,717	-		LRK54_RS09000	0.85	-0.6
1,960,717	-		LRK54_RS09000	0.85	-0.7
1,960,717	-		LRK54_RS09000	0.85	+0.4
1,960,717	-		LRK54_RS09000	0.85	-2.8
1,960,717	-		LRK54_RS09000	0.85	+0.2
1,960,722	+		LRK54_RS09000	0.85	-0.2
1,960,722	+		LRK54_RS09000	0.85	-0.4
1,960,722	+		LRK54_RS09000	0.85	+0.4
1,960,722	+		LRK54_RS09000	0.85	-1.6
1,960,722	+		LRK54_RS09000	0.85	-0.5
1,960,722	+		LRK54_RS09000	0.85	-1.6
1,960,722	+		LRK54_RS09000	0.85	-1.5
1,960,722	+		LRK54_RS09000	0.85	-0.1
1,960,722	+		LRK54_RS09000	0.85	+0.6
1,960,722	+		LRK54_RS09000	0.85	+0.9
1,960,723	-		LRK54_RS09000	0.85	-0.6
1,960,723	-		LRK54_RS09000	0.85	+0.2
1,960,723	-		LRK54_RS09000	0.85	+1.2
1,960,723	-		LRK54_RS09000	0.85	-1.1
1,960,723	-		LRK54_RS09000	0.85	-0.7
1,960,723	-		LRK54_RS09000	0.85	-1.5
1,960,723	-		LRK54_RS09000	0.85	-1.9
1,960,723	-		LRK54_RS09000	0.85	+1.6
1,960,723	-		LRK54_RS09000	0.85	-0.9
1,960,743	-		LRK54_RS09000	0.87	+0.9
1,960,750	+		LRK54_RS09000	0.88	+0.2
1,960,750	+		LRK54_RS09000	0.88	-0.5
1,960,904	-				+0.9
1,960,904	-				-0.4
1,960,904	-				+2.2
1,960,904	-				-0.8
1,960,927	+				-1.5
1,960,927	+				-0.8
1,960,927	+				-1.8
1,960,928	-				-0.1
1,960,928	-				-0.4
1,960,955	-				-1.5
1,960,962	-				-1.7
1,960,980	+				+0.9
1,960,980	+				+1.2
1,960,980	+				-0.9
1,960,980	+				+0.6
1,960,980	+				+2.2
1,960,981	-				-0.4
1,961,203	+		LRK54_RS09005	0.41	+0.1
1,961,203	+		LRK54_RS09005	0.41	+0.3
1,961,203	+		LRK54_RS09005	0.41	-2.2
1,961,204	-		LRK54_RS09005	0.41	-2.6
1,961,292	-		LRK54_RS09005	0.54	-0.9
1,961,292	-		LRK54_RS09005	0.54	-1.7
1,961,311	+		LRK54_RS09005	0.57	-1.1
1,961,311	+		LRK54_RS09005	0.57	-2.1
1,961,311	+		LRK54_RS09005	0.57	-2.2
1,961,312	-		LRK54_RS09005	0.57	+1.2
1,961,513	-		LRK54_RS09005	0.87	-0.2
1,961,513	-		LRK54_RS09005	0.87	-2.8
1,961,513	-		LRK54_RS09005	0.87	-0.8
1,961,548	+				-0.7
1,961,549	-				-0.2
1,961,549	-				-2.7
1,961,549	-				-1.4
1,961,910	+				+3.2
1,961,910	+				-0.8
1,961,910	+				-1.9
1,961,910	+				-0.9
1,961,910	+				-0.5
1,961,911	-				+1.6
1,961,911	-				-1.6
1,961,911	-				+0.1
1,962,189	+		LRK54_RS09010	0.18	-0.6
1,962,189	+		LRK54_RS09010	0.18	-1.7
1,962,189	+		LRK54_RS09010	0.18	+0.1
1,962,190	-		LRK54_RS09010	0.18	-1.8
1,962,190	-		LRK54_RS09010	0.18	+1.2
1,962,190	-		LRK54_RS09010	0.18	-1.7
1,962,190	-		LRK54_RS09010	0.18	+0.6
1,962,321	+		LRK54_RS09010	0.23	-2.3
1,962,321	+		LRK54_RS09010	0.23	+1.6
1,962,322	-		LRK54_RS09010	0.23	-0.9
1,962,322	-		LRK54_RS09010	0.23	+0.3
1,962,322	-		LRK54_RS09010	0.23	-1.5
1,962,322	-		LRK54_RS09010	0.23	-2.3
1,962,322	-		LRK54_RS09010	0.23	+0.3
1,962,322	-		LRK54_RS09010	0.23	+0.6
1,962,339	+		LRK54_RS09010	0.23	+0.3
1,962,339	+		LRK54_RS09010	0.23	-3.6
1,962,339	+		LRK54_RS09010	0.23	-1.1
1,962,339	+		LRK54_RS09010	0.23	-2.0
1,962,339	+		LRK54_RS09010	0.23	+1.2
1,962,339	+		LRK54_RS09010	0.23	-0.6
1,962,339	+		LRK54_RS09010	0.23	-0.0
1,962,339	+		LRK54_RS09010	0.23	+0.9
1,962,340	-		LRK54_RS09010	0.23	+0.6
1,962,340	-		LRK54_RS09010	0.23	+1.5
1,962,340	-		LRK54_RS09010	0.23	-0.0
1,962,340	-		LRK54_RS09010	0.23	+1.6
1,962,340	-		LRK54_RS09010	0.23	-2.3
1,962,369	+		LRK54_RS09010	0.24	-0.7
1,962,369	+		LRK54_RS09010	0.24	+0.1
1,962,369	+		LRK54_RS09010	0.24	-1.8
1,962,369	+		LRK54_RS09010	0.24	-2.7
1,962,369	+		LRK54_RS09010	0.24	-1.3
1,962,369	+		LRK54_RS09010	0.24	-0.9
1,962,369	+		LRK54_RS09010	0.24	+1.6
1,962,369	+		LRK54_RS09010	0.24	+0.2
1,962,369	+		LRK54_RS09010	0.24	+1.8
1,962,370	-		LRK54_RS09010	0.24	-1.6
1,962,370	-		LRK54_RS09010	0.24	+1.2
1,962,370	-		LRK54_RS09010	0.24	+0.1
1,962,370	-		LRK54_RS09010	0.24	+1.2
1,962,370	-		LRK54_RS09010	0.24	-0.1
1,962,370	-		LRK54_RS09010	0.24	+1.1
1,962,370	-		LRK54_RS09010	0.24	-2.0
1,962,370	-		LRK54_RS09010	0.24	+2.6
1,962,370	-		LRK54_RS09010	0.24	-0.5
1,962,475	-		LRK54_RS09010	0.28	-0.7
1,962,501	+		LRK54_RS09010	0.28	-1.2