Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08885

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,930,026	+				+0.1
1,930,026	+				-2.0
1,930,084	+				-0.4
1,930,084	+				-0.2
1,930,085	-				-0.8
1,930,141	-				-0.1
1,930,161	-				+0.6
1,930,161	-				-0.4
1,930,161	-				+0.0
1,930,176	-				-2.1
1,930,176	-				-2.0
1,930,213	+				-0.2
1,930,214	-				-0.2
1,930,218	-				-0.4
1,930,261	-				-0.7
1,930,269	-				-2.6
1,930,305	-				+2.2
1,930,333	+				-0.4
1,930,356	+				+1.3
1,930,387	+				+0.6
1,930,398	+				+1.2
1,930,399	-				+1.0
1,930,399	-				+0.0
1,930,399	-				+2.2
1,930,415	-				-1.1
1,930,437	+				-1.5
1,930,437	+				-0.5
1,930,491	+				-2.9
1,930,491	+				+1.2
1,930,491	+				+1.2
1,930,491	+				-0.5
1,930,491	+				-0.5
1,930,491	+				+1.2
1,930,492	-				+0.2
1,930,492	-				+1.6
1,930,492	-				-1.5
1,930,492	-				+0.5
1,930,494	+				-1.9
1,930,494	+				-0.9
1,930,494	+				-0.9
1,930,494	+				-0.7
1,930,495	-				+0.2
1,930,495	-				+3.2
1,930,495	-				-1.2
1,930,495	-				+1.6
1,930,519	+		LRK54_RS08880	0.11	-0.1
1,930,519	+		LRK54_RS08880	0.11	+0.6
1,930,542	+		LRK54_RS08880	0.17	+1.7
1,930,542	+		LRK54_RS08880	0.17	-0.5
1,930,542	+		LRK54_RS08880	0.17	-0.7
1,930,542	+		LRK54_RS08880	0.17	-2.0
1,930,542	+		LRK54_RS08880	0.17	+0.4
1,930,542	+		LRK54_RS08880	0.17	-2.0
1,930,542	+		LRK54_RS08880	0.17	-1.0
1,930,542	+		LRK54_RS08880	0.17	-1.0
1,930,542	+		LRK54_RS08880	0.17	-2.2
1,930,542	+		LRK54_RS08880	0.17	-1.3
1,930,542	+		LRK54_RS08880	0.17	+0.6
1,930,543	-		LRK54_RS08880	0.17	+1.6
1,930,543	-		LRK54_RS08880	0.17	+0.9
1,930,543	-		LRK54_RS08880	0.17	-1.5
1,930,543	-		LRK54_RS08880	0.17	+1.6
1,930,617	+		LRK54_RS08880	0.34	+1.2
1,930,617	+		LRK54_RS08880	0.34	-1.3
1,930,621	+		LRK54_RS08880	0.34	-2.2
1,930,622	-		LRK54_RS08880	0.35	-1.9
1,930,629	-		LRK54_RS08880	0.36	-0.7
1,930,629	-		LRK54_RS08880	0.36	-0.9
1,930,651	+		LRK54_RS08880	0.41	-2.6
1,930,651	+		LRK54_RS08880	0.41	-1.0
1,930,651	+		LRK54_RS08880	0.41	-1.5
1,930,651	+		LRK54_RS08880	0.41	+0.6
1,930,652	-		LRK54_RS08880	0.41	+0.6
1,930,658	+		LRK54_RS08880	0.43	-0.5
1,930,658	+		LRK54_RS08880	0.43	-0.4
1,930,658	+		LRK54_RS08880	0.43	-0.9
1,930,659	-		LRK54_RS08880	0.43	-1.5
1,930,659	-		LRK54_RS08880	0.43	-0.8
1,930,659	-		LRK54_RS08880	0.43	-2.0
1,930,659	-		LRK54_RS08880	0.43	+1.7
1,930,662	+		LRK54_RS08880	0.44	-0.7
1,930,662	+		LRK54_RS08880	0.44	-0.6
1,930,662	+		LRK54_RS08880	0.44	-2.9
1,930,663	-		LRK54_RS08880	0.44	-1.7
1,930,663	-		LRK54_RS08880	0.44	-2.2
1,930,663	-		LRK54_RS08880	0.44	-1.1
1,930,663	-		LRK54_RS08880	0.44	+0.0
1,930,663	-		LRK54_RS08880	0.44	-1.0
1,930,663	-		LRK54_RS08880	0.44	+1.2
1,930,682	+		LRK54_RS08880	0.48	-0.7
1,930,682	+		LRK54_RS08880	0.48	-1.4
1,930,706	+		LRK54_RS08880	0.54	-1.0
1,930,706	+		LRK54_RS08880	0.54	-0.4
1,930,706	+		LRK54_RS08880	0.54	+1.6
1,930,706	+		LRK54_RS08880	0.54	-0.6
1,930,706	+		LRK54_RS08880	0.54	-2.4
1,930,706	+		LRK54_RS08880	0.54	-1.0
1,930,706	+		LRK54_RS08880	0.54	-0.2
1,930,707	-		LRK54_RS08880	0.54	-1.0
1,930,707	-		LRK54_RS08880	0.54	-1.4
1,930,707	-		LRK54_RS08880	0.54	-2.2
1,930,707	-		LRK54_RS08880	0.54	+2.2
1,930,707	-		LRK54_RS08880	0.54	-0.5
1,930,750	+		LRK54_RS08880	0.64	-1.9
1,930,750	+		LRK54_RS08880	0.64	-2.3
1,930,750	+		LRK54_RS08880	0.64	-1.0
1,930,750	+		LRK54_RS08880	0.64	-0.8
1,930,750	+		LRK54_RS08880	0.64	+0.9
1,930,750	+		LRK54_RS08880	0.64	+1.6
1,930,750	+		LRK54_RS08880	0.64	-2.7
1,930,751	-		LRK54_RS08880	0.64	+0.0
1,930,751	-		LRK54_RS08880	0.64	-0.1
1,930,751	-		LRK54_RS08880	0.64	-1.2
1,930,764	+		LRK54_RS08880	0.67	-0.4
1,930,765	-		LRK54_RS08880	0.67	+2.2
1,930,765	-		LRK54_RS08880	0.67	-0.5
1,930,784	-		LRK54_RS08880	0.71	+0.0
1,930,843	-		LRK54_RS08880	0.84	-1.3
1,930,882	+				+0.3
1,930,882	+				-1.2
1,930,882	+				-1.0
1,930,883	-				+1.2
1,930,934	+				-2.9
1,930,935	-				-0.6
1,930,945	-				-0.2
1,930,956	+				-0.8
1,930,957	-				+1.2
1,931,033	-				+0.9
1,931,033	-				-0.2
1,931,036	+				-0.6
1,931,036	+				-0.5
1,931,037	-				+0.3
1,931,037	-				-1.8
1,931,037	-				+2.5
1,931,037	-				-1.8
1,931,037	-				-1.4
1,931,040	+				-0.5
1,931,040	+				+0.9
1,931,041	-				-0.6
1,931,041	-				-1.5
1,931,041	-				-3.0
1,931,082	-		LRK54_RS08885	0.18	-0.6
1,931,105	-		LRK54_RS08885	0.24	-0.4
1,931,105	-		LRK54_RS08885	0.24	+1.6
1,931,105	-		LRK54_RS08885	0.24	-0.4
1,931,105	-		LRK54_RS08885	0.24	-1.4
1,931,105	-		LRK54_RS08885	0.24	-1.0
1,931,120	+		LRK54_RS08885	0.27	-1.8
1,931,121	-		LRK54_RS08885	0.28	-1.0
1,931,199	-		LRK54_RS08885	0.46	-3.4
1,931,199	-		LRK54_RS08885	0.46	-0.9
1,931,199	-		LRK54_RS08885	0.46	+1.2
1,931,207	+		LRK54_RS08885	0.48	-2.1
1,931,207	+		LRK54_RS08885	0.48	-2.0
1,931,207	+		LRK54_RS08885	0.48	-1.2
1,931,208	-		LRK54_RS08885	0.49	-1.3
1,931,316	+		LRK54_RS08885	0.75	-0.9
1,931,316	+		LRK54_RS08885	0.75	-1.5
1,931,316	+		LRK54_RS08885	0.75	+0.6
1,931,420	+				+1.6
1,931,420	+				-2.3
1,931,420	+				-0.2
1,931,420	+				+0.2
1,931,523	+				-1.1
1,931,524	-				-0.9
1,931,539	+				+0.3
1,931,539	+				-1.7
1,931,539	+				+0.9
1,931,540	-				-1.2
1,931,540	-				-1.7
1,931,540	-				-1.7
1,931,548	+				-0.1
1,931,635	+				-1.9
1,931,637	+				-1.0
1,931,638	-				-1.1
1,931,638	-				+0.4
1,931,750	+				-0.2
1,931,750	+				-1.1
1,931,750	+				-0.2
1,931,750	+				-0.6
1,931,751	-				+0.2
1,931,751	-				-1.4
1,931,751	-				-0.2
1,931,751	-				+0.6
1,931,751	-				-0.8
1,931,827	+				-1.8
1,931,827	+				+2.2
1,931,827	+				-0.9
1,931,827	+				-1.5
1,931,828	-				-0.6
1,931,828	-				-0.8
1,931,887	+				-1.2
1,931,887	+				+1.6
1,931,888	-				-1.2
1,931,888	-				+0.4
1,931,914	-				-0.1
1,931,920	+				-1.9
1,931,920	+				+0.9
1,931,920	+				-0.6
1,931,920	+				+0.4
1,931,920	+				-1.9
1,931,921	-				-0.1
1,931,921	-				-0.2
1,931,921	-				+0.0
1,931,970	+				-0.1
1,931,985	+				-0.4
1,931,985	+				-0.4
1,931,996	+				-0.3
1,931,997	-				+1.4
1,932,009	+				-0.1
1,932,009	+				+0.6
1,932,009	+				-0.2
1,932,009	+				-0.3
1,932,009	+				+0.6
1,932,009	+				+0.4
1,932,009	+				-0.1
1,932,010	-				+1.2
1,932,010	-				+0.4
1,932,010	-				-0.8
1,932,010	-				+0.6
1,932,010	-				+1.6
1,932,010	-				+2.2
1,932,017	+				+3.2
1,932,017	+				-1.9
1,932,080	+				-1.1
1,932,081	-				-1.3
1,932,081	-				+1.2
1,932,104	+				+0.9
1,932,104	+				+1.2
1,932,104	+				-1.2
1,932,104	+				-0.2
1,932,104	+				+0.4
1,932,104	+				-0.2
1,932,105	-				-0.1
1,932,105	-				-0.5
1,932,105	-				-2.2
1,932,105	-				+0.6
1,932,105	-				-0.8
1,932,109	-				+0.6
1,932,134	-				-1.0
1,932,134	-				-0.2
1,932,134	-				+0.0
1,932,271	+		LRK54_RS08890	0.22	+0.0
1,932,271	+		LRK54_RS08890	0.22	-1.9
1,932,272	-		LRK54_RS08890	0.22	-2.4
1,932,272	-		LRK54_RS08890	0.22	-2.1
1,932,286	+		LRK54_RS08890	0.25	+1.8
1,932,302	+		LRK54_RS08890	0.29	+0.0
1,932,303	-		LRK54_RS08890	0.29	-1.7
1,932,303	-		LRK54_RS08890	0.29	-0.5
1,932,303	-		LRK54_RS08890	0.29	-1.9
1,932,304	+		LRK54_RS08890	0.30	+1.2
1,932,304	+		LRK54_RS08890	0.30	-0.1
1,932,305	-		LRK54_RS08890	0.30	-0.8
1,932,401	+		LRK54_RS08890	0.52	-1.5
1,932,402	-		LRK54_RS08890	0.53	+0.9
1,932,402	-		LRK54_RS08890	0.53	-0.9
1,932,402	-		LRK54_RS08890	0.53	-1.4
1,932,402	-		LRK54_RS08890	0.53	-0.2