Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08480 and LRK54_RS08485 are separated by 243 nucleotides LRK54_RS08485 and LRK54_RS08490 are separated by 194 nucleotides LRK54_RS08490 and LRK54_RS08495 are separated by 14 nucleotides LRK54_RS08495 and LRK54_RS08500 are separated by 64 nucleotides
LRK54_RS08480: LRK54_RS08480 - DNA polymerase III subunit beta, at 1,850,035 to 1,851,135
_RS08480
LRK54_RS08485: LRK54_RS08485 - chromosomal replication initiator protein DnaA, at 1,851,379 to 1,852,707
_RS08485
LRK54_RS08490: LRK54_RS08490 - 50S ribosomal protein L34, at 1,852,902 to 1,853,036
_RS08490
LRK54_RS08495: LRK54_RS08495 - ribonuclease P protein component, at 1,853,051 to 1,853,455
_RS08495
LRK54_RS08500: LRK54_RS08500 - membrane protein insertase YidC, at 1,853,520 to 1,855,256
_RS08500
Position (kb)
1851
1852
1853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.151 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.153 kb on - strand at 1851.171 kb on - strand at 1851.171 kb on - strand at 1851.171 kb on - strand at 1851.354 kb on - strand at 1851.354 kb on - strand at 1851.354 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1851.360 kb on - strand at 1852.712 kb on - strand at 1852.712 kb on - strand at 1852.758 kb on - strand at 1852.758 kb on - strand at 1852.758 kb on - strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.762 kb on + strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.763 kb on - strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.795 kb on + strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.796 kb on - strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1852.860 kb on + strand at 1853.034 kb on + strand at 1853.085 kb on + strand at 1853.514 kb on + strand at 1853.514 kb on + strand at 1853.514 kb on + strand at 1853.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 1,851,151 - -2.9 1,851,151 - -1.1 1,851,151 - +0.4 1,851,151 - +0.1 1,851,151 - -2.1 1,851,151 - -1.7 1,851,151 - +0.4 1,851,151 - -0.1 1,851,151 - +0.6 1,851,151 - -0.8 1,851,151 - -2.1 1,851,151 - -1.8 1,851,151 - -1.5 1,851,151 - +0.9 1,851,151 - +0.1 1,851,153 - +1.2 1,851,153 - -0.5 1,851,153 - +1.6 1,851,153 - -1.4 1,851,153 - +0.4 1,851,153 - -1.1 1,851,153 - +0.5 1,851,153 - -1.7 1,851,153 - +0.9 1,851,153 - +0.2 1,851,153 - -0.2 1,851,153 - -0.9 1,851,153 - -0.2 1,851,153 - -0.2 1,851,153 - -0.1 1,851,153 - -0.2 1,851,153 - +1.4 1,851,153 - -1.2 1,851,153 - -1.0 1,851,153 - -1.4 1,851,153 - +0.2 1,851,153 - -3.1 1,851,153 - -0.5 1,851,153 - -0.2 1,851,153 - -1.6 1,851,153 - +0.6 1,851,153 - +1.3 1,851,153 - +0.3 1,851,171 - +1.6 1,851,171 - -0.7 1,851,171 - +0.9 1,851,354 - +2.2 1,851,354 - +0.6 1,851,354 - -0.6 1,851,360 - +0.6 1,851,360 - -1.6 1,851,360 - +0.0 1,851,360 - +0.6 1,851,360 - -1.2 1,851,360 - -0.2 1,851,360 - -0.4 1,851,360 - +0.2 1,851,360 - +0.9 1,851,360 - +0.6 1,852,712 - -0.2 1,852,712 - -0.7 1,852,758 - +0.4 1,852,758 - -0.1 1,852,758 - +0.9 1,852,762 + +1.2 1,852,762 + -2.6 1,852,762 + -0.4 1,852,762 + +0.9 1,852,762 + -2.5 1,852,762 + -0.1 1,852,762 + -0.6 1,852,762 + -0.4 1,852,762 + +0.6 1,852,762 + -1.3 1,852,762 + -0.4 1,852,762 + -0.4 1,852,762 + +1.5 1,852,762 + +0.2 1,852,762 + +0.7 1,852,762 + +0.2 1,852,762 + -1.1 1,852,762 + -1.0 1,852,762 + -2.3 1,852,762 + -0.9 1,852,762 + -1.0 1,852,762 + -1.3 1,852,762 + -0.1 1,852,762 + +0.3 1,852,762 + +0.2 1,852,762 + -0.1 1,852,762 + +0.3 1,852,762 + -0.3 1,852,762 + -1.3 1,852,762 + +0.0 1,852,762 + -0.1 1,852,762 + -0.1 1,852,762 + -0.4 1,852,762 + -1.8 1,852,762 + -1.4 1,852,762 + -0.8 1,852,762 + +0.6 1,852,762 + +0.9 1,852,762 + +0.6 1,852,762 + +0.2 1,852,763 - -2.8 1,852,763 - -0.6 1,852,763 - -0.1 1,852,763 - -0.4 1,852,763 - -1.0 1,852,763 - -1.0 1,852,763 - -0.2 1,852,763 - +0.6 1,852,763 - -0.3 1,852,763 - +0.2 1,852,763 - -1.7 1,852,763 - -1.9 1,852,763 - +0.4 1,852,763 - +2.2 1,852,763 - -0.3 1,852,763 - +0.9 1,852,763 - +0.6 1,852,763 - +0.3 1,852,763 - +0.1 1,852,763 - +4.2 1,852,763 - +2.2 1,852,763 - -0.1 1,852,763 - +0.2 1,852,763 - +1.1 1,852,763 - +2.2 1,852,763 - +0.9 1,852,763 - +0.8 1,852,763 - +1.6 1,852,795 + +1.6 1,852,795 + +0.4 1,852,795 + -0.9 1,852,795 + -1.0 1,852,795 + -1.2 1,852,795 + -2.0 1,852,795 + +0.2 1,852,795 + -0.3 1,852,795 + +0.5 1,852,795 + -1.3 1,852,795 + -1.4 1,852,795 + +1.2 1,852,795 + -1.5 1,852,796 - -1.3 1,852,796 - +1.5 1,852,796 - -1.2 1,852,796 - -2.2 1,852,796 - -0.9 1,852,796 - -1.5 1,852,796 - -1.3 1,852,796 - +0.1 1,852,796 - -0.0 1,852,796 - +0.5 1,852,796 - -0.3 1,852,796 - -1.8 1,852,796 - +0.6 1,852,796 - -1.3 1,852,796 - -0.3 1,852,796 - +0.3 1,852,796 - -0.1 1,852,796 - -1.6 1,852,796 - +0.1 1,852,796 - -0.3 1,852,796 - -2.4 1,852,796 - +1.1 1,852,796 - +1.6 1,852,796 - -0.9 1,852,796 - +0.2 1,852,860 + -1.6 1,852,860 + -0.8 1,852,860 + -2.0 1,852,860 + -0.4 1,852,860 + -1.5 1,852,860 + +0.9 1,852,860 + -2.0 1,852,860 + -1.3 1,852,860 + -2.0 1,852,860 + -1.5 1,852,860 + +0.9 1,852,860 + +0.6 1,852,860 + -1.5 1,852,860 + -2.5 1,852,860 + +0.7 1,852,860 + -1.0 1,852,860 + -0.6 1,852,860 + -2.4 1,852,860 + +1.6 1,853,034 + -0.8 1,853,085 + +0.4 1,853,514 + +1.6 1,853,514 + -0.9 1,853,514 + +1.2 1,853,514 + -1.4
Or see this region's nucleotide sequence