Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08485

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08480 and LRK54_RS08485 are separated by 243 nucleotidesLRK54_RS08485 and LRK54_RS08490 are separated by 194 nucleotidesLRK54_RS08490 and LRK54_RS08495 are separated by 14 nucleotidesLRK54_RS08495 and LRK54_RS08500 are separated by 64 nucleotides LRK54_RS08480: LRK54_RS08480 - DNA polymerase III subunit beta, at 1,850,035 to 1,851,135 _RS08480 LRK54_RS08485: LRK54_RS08485 - chromosomal replication initiator protein DnaA, at 1,851,379 to 1,852,707 _RS08485 LRK54_RS08490: LRK54_RS08490 - 50S ribosomal protein L34, at 1,852,902 to 1,853,036 _RS08490 LRK54_RS08495: LRK54_RS08495 - ribonuclease P protein component, at 1,853,051 to 1,853,455 _RS08495 LRK54_RS08500: LRK54_RS08500 - membrane protein insertase YidC, at 1,853,520 to 1,855,256 _RS08500 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.151 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.153 kb on - strandat 1851.171 kb on - strandat 1851.171 kb on - strandat 1851.171 kb on - strandat 1851.354 kb on - strandat 1851.354 kb on - strandat 1851.354 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1851.360 kb on - strandat 1852.712 kb on - strandat 1852.712 kb on - strandat 1852.758 kb on - strandat 1852.758 kb on - strandat 1852.758 kb on - strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.762 kb on + strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.763 kb on - strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.795 kb on + strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.796 kb on - strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1852.860 kb on + strandat 1853.034 kb on + strandat 1853.085 kb on + strandat 1853.514 kb on + strandat 1853.514 kb on + strandat 1853.514 kb on + strandat 1853.514 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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1,851,151 - -2.9
1,851,151 - -1.1
1,851,151 - +0.4
1,851,151 - +0.1
1,851,151 - -2.1
1,851,151 - -1.7
1,851,151 - +0.4
1,851,151 - -0.1
1,851,151 - +0.6
1,851,151 - -0.8
1,851,151 - -2.1
1,851,151 - -1.8
1,851,151 - -1.5
1,851,151 - +0.9
1,851,151 - +0.1
1,851,153 - +1.2
1,851,153 - -0.5
1,851,153 - +1.6
1,851,153 - -1.4
1,851,153 - +0.4
1,851,153 - -1.1
1,851,153 - +0.5
1,851,153 - -1.7
1,851,153 - +0.9
1,851,153 - +0.2
1,851,153 - -0.2
1,851,153 - -0.9
1,851,153 - -0.2
1,851,153 - -0.2
1,851,153 - -0.1
1,851,153 - -0.2
1,851,153 - +1.4
1,851,153 - -1.2
1,851,153 - -1.0
1,851,153 - -1.4
1,851,153 - +0.2
1,851,153 - -3.1
1,851,153 - -0.5
1,851,153 - -0.2
1,851,153 - -1.6
1,851,153 - +0.6
1,851,153 - +1.3
1,851,153 - +0.3
1,851,171 - +1.6
1,851,171 - -0.7
1,851,171 - +0.9
1,851,354 - +2.2
1,851,354 - +0.6
1,851,354 - -0.6
1,851,360 - +0.6
1,851,360 - -1.6
1,851,360 - +0.0
1,851,360 - +0.6
1,851,360 - -1.2
1,851,360 - -0.2
1,851,360 - -0.4
1,851,360 - +0.2
1,851,360 - +0.9
1,851,360 - +0.6
1,852,712 - -0.2
1,852,712 - -0.7
1,852,758 - +0.4
1,852,758 - -0.1
1,852,758 - +0.9
1,852,762 + +1.2
1,852,762 + -2.6
1,852,762 + -0.4
1,852,762 + +0.9
1,852,762 + -2.5
1,852,762 + -0.1
1,852,762 + -0.6
1,852,762 + -0.4
1,852,762 + +0.6
1,852,762 + -1.3
1,852,762 + -0.4
1,852,762 + -0.4
1,852,762 + +1.5
1,852,762 + +0.2
1,852,762 + +0.7
1,852,762 + +0.2
1,852,762 + -1.1
1,852,762 + -1.0
1,852,762 + -2.3
1,852,762 + -0.9
1,852,762 + -1.0
1,852,762 + -1.3
1,852,762 + -0.1
1,852,762 + +0.3
1,852,762 + +0.2
1,852,762 + -0.1
1,852,762 + +0.3
1,852,762 + -0.3
1,852,762 + -1.3
1,852,762 + +0.0
1,852,762 + -0.1
1,852,762 + -0.1
1,852,762 + -0.4
1,852,762 + -1.8
1,852,762 + -1.4
1,852,762 + -0.8
1,852,762 + +0.6
1,852,762 + +0.9
1,852,762 + +0.6
1,852,762 + +0.2
1,852,763 - -2.8
1,852,763 - -0.6
1,852,763 - -0.1
1,852,763 - -0.4
1,852,763 - -1.0
1,852,763 - -1.0
1,852,763 - -0.2
1,852,763 - +0.6
1,852,763 - -0.3
1,852,763 - +0.2
1,852,763 - -1.7
1,852,763 - -1.9
1,852,763 - +0.4
1,852,763 - +2.2
1,852,763 - -0.3
1,852,763 - +0.9
1,852,763 - +0.6
1,852,763 - +0.3
1,852,763 - +0.1
1,852,763 - +4.2
1,852,763 - +2.2
1,852,763 - -0.1
1,852,763 - +0.2
1,852,763 - +1.1
1,852,763 - +2.2
1,852,763 - +0.9
1,852,763 - +0.8
1,852,763 - +1.6
1,852,795 + +1.6
1,852,795 + +0.4
1,852,795 + -0.9
1,852,795 + -1.0
1,852,795 + -1.2
1,852,795 + -2.0
1,852,795 + +0.2
1,852,795 + -0.3
1,852,795 + +0.5
1,852,795 + -1.3
1,852,795 + -1.4
1,852,795 + +1.2
1,852,795 + -1.5
1,852,796 - -1.3
1,852,796 - +1.5
1,852,796 - -1.2
1,852,796 - -2.2
1,852,796 - -0.9
1,852,796 - -1.5
1,852,796 - -1.3
1,852,796 - +0.1
1,852,796 - -0.0
1,852,796 - +0.5
1,852,796 - -0.3
1,852,796 - -1.8
1,852,796 - +0.6
1,852,796 - -1.3
1,852,796 - -0.3
1,852,796 - +0.3
1,852,796 - -0.1
1,852,796 - -1.6
1,852,796 - +0.1
1,852,796 - -0.3
1,852,796 - -2.4
1,852,796 - +1.1
1,852,796 - +1.6
1,852,796 - -0.9
1,852,796 - +0.2
1,852,860 + -1.6
1,852,860 + -0.8
1,852,860 + -2.0
1,852,860 + -0.4
1,852,860 + -1.5
1,852,860 + +0.9
1,852,860 + -2.0
1,852,860 + -1.3
1,852,860 + -2.0
1,852,860 + -1.5
1,852,860 + +0.9
1,852,860 + +0.6
1,852,860 + -1.5
1,852,860 + -2.5
1,852,860 + +0.7
1,852,860 + -1.0
1,852,860 + -0.6
1,852,860 + -2.4
1,852,860 + +1.6
1,853,034 + -0.8
1,853,085 + +0.4
1,853,514 + +1.6
1,853,514 + -0.9
1,853,514 + +1.2
1,853,514 + -1.4

Or see this region's nucleotide sequence