Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07595

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,632,157	+		LRK54_RS07585	0.69	-2.6
1,632,157	+		LRK54_RS07585	0.69	-2.6
1,632,157	+		LRK54_RS07585	0.69	-1.6
1,632,157	+		LRK54_RS07585	0.69	-1.2
1,632,157	+		LRK54_RS07585	0.69	+0.9
1,632,157	+		LRK54_RS07585	0.69	-1.9
1,632,157	+		LRK54_RS07585	0.69	-2.1
1,632,157	+		LRK54_RS07585	0.69	+1.6
1,632,157	+		LRK54_RS07585	0.69	-1.8
1,632,157	+		LRK54_RS07585	0.69	-1.5
1,632,157	+		LRK54_RS07585	0.69	+1.0
1,632,157	+		LRK54_RS07585	0.69	-1.2
1,632,157	+		LRK54_RS07585	0.69	-2.3
1,632,157	+		LRK54_RS07585	0.69	-1.8
1,632,157	+		LRK54_RS07585	0.69	-0.4
1,632,157	+		LRK54_RS07585	0.69	-3.2
1,632,158	-		LRK54_RS07585	0.69	-1.5
1,632,158	-		LRK54_RS07585	0.69	+0.6
1,632,158	-		LRK54_RS07585	0.69	-3.6
1,632,158	-		LRK54_RS07585	0.69	-2.0
1,632,158	-		LRK54_RS07585	0.69	+1.6
1,632,158	-		LRK54_RS07585	0.69	-0.8
1,632,158	-		LRK54_RS07585	0.69	+1.2
1,632,158	-		LRK54_RS07585	0.69	-2.2
1,632,158	-		LRK54_RS07585	0.69	-1.9
1,632,158	-		LRK54_RS07585	0.69	-1.0
1,632,158	-		LRK54_RS07585	0.69	+0.9
1,632,158	-		LRK54_RS07585	0.69	-1.2
1,632,211	+		LRK54_RS07585	0.73	+0.7
1,632,211	+		LRK54_RS07585	0.73	-3.9
1,632,211	+		LRK54_RS07585	0.73	-0.6
1,632,211	+		LRK54_RS07585	0.73	-3.5
1,632,211	+		LRK54_RS07585	0.73	+0.9
1,632,212	-		LRK54_RS07585	0.73	-1.4
1,632,212	-		LRK54_RS07585	0.73	-0.9
1,632,212	-		LRK54_RS07585	0.73	+1.2
1,632,212	-		LRK54_RS07585	0.73	+0.0
1,632,212	-		LRK54_RS07585	0.73	-1.7
1,632,212	-		LRK54_RS07585	0.73	-0.4
1,632,229	-		LRK54_RS07585	0.74	-2.0
1,632,229	-		LRK54_RS07585	0.74	+0.2
1,632,353	-		LRK54_RS07585	0.82	-0.6
1,632,353	-		LRK54_RS07585	0.82	-2.3
1,632,460	+		LRK54_RS07585	0.88	-3.1
1,632,460	+		LRK54_RS07585	0.88	+0.0
1,632,461	-		LRK54_RS07585	0.88	+0.9
1,632,461	-		LRK54_RS07585	0.88	+0.2
1,632,870	+		LRK54_RS07590	0.67	+0.2
1,632,871	-		LRK54_RS07590	0.68	-0.9
1,633,151	+				-0.6
1,633,152	-				+0.4
1,633,152	-				+1.6
1,633,295	+		LRK54_RS07595	0.11	+0.0
1,633,295	+		LRK54_RS07595	0.11	-2.4
1,633,295	+		LRK54_RS07595	0.11	-0.4
1,633,295	+		LRK54_RS07595	0.11	-2.2
1,633,295	+		LRK54_RS07595	0.11	-2.3
1,633,295	+		LRK54_RS07595	0.11	-1.8
1,633,295	+		LRK54_RS07595	0.11	+1.2
1,633,295	+		LRK54_RS07595	0.11	+0.6
1,633,295	+		LRK54_RS07595	0.11	-0.6
1,633,295	+		LRK54_RS07595	0.11	+1.6
1,633,295	+		LRK54_RS07595	0.11	+0.0
1,633,295	+		LRK54_RS07595	0.11	-3.0
1,633,295	+		LRK54_RS07595	0.11	-1.2
1,633,296	-		LRK54_RS07595	0.11	-0.5
1,633,296	-		LRK54_RS07595	0.11	-2.7
1,633,296	-		LRK54_RS07595	0.11	-1.9
1,633,296	-		LRK54_RS07595	0.11	+0.9
1,633,296	-		LRK54_RS07595	0.11	+1.2
1,633,296	-		LRK54_RS07595	0.11	+3.2
1,633,296	-		LRK54_RS07595	0.11	-1.0
1,633,296	-		LRK54_RS07595	0.11	-0.8
1,633,296	-		LRK54_RS07595	0.11	-2.7
1,633,439	+		LRK54_RS07595	0.16	-2.4
1,633,439	+		LRK54_RS07595	0.16	-0.4
1,633,439	+		LRK54_RS07595	0.16	+3.2
1,633,440	-		LRK54_RS07595	0.16	-1.0
1,633,440	-		LRK54_RS07595	0.16	-0.1
1,633,440	-		LRK54_RS07595	0.16	+1.2
1,633,440	-		LRK54_RS07595	0.16	-0.8
1,633,440	-		LRK54_RS07595	0.16	-0.5
1,633,588	+		LRK54_RS07595	0.21	-1.1
1,633,588	+		LRK54_RS07595	0.21	-2.8
1,633,588	+		LRK54_RS07595	0.21	-0.2
1,633,588	+		LRK54_RS07595	0.21	-3.1
1,633,588	+		LRK54_RS07595	0.21	+1.2
1,633,589	-		LRK54_RS07595	0.21	+0.1
1,633,589	-		LRK54_RS07595	0.21	-0.5
1,633,589	-		LRK54_RS07595	0.21	-1.4
1,633,589	-		LRK54_RS07595	0.21	-2.2
1,633,589	-		LRK54_RS07595	0.21	-0.1
1,633,589	-		LRK54_RS07595	0.21	-1.5
1,633,670	+		LRK54_RS07595	0.24	-0.8
1,633,671	-		LRK54_RS07595	0.24	+0.6
1,633,671	-		LRK54_RS07595	0.24	+2.2
1,633,671	-		LRK54_RS07595	0.24	+1.6
1,633,730	+		LRK54_RS07595	0.26	-0.1
1,633,731	-		LRK54_RS07595	0.26	-0.4
1,633,731	-		LRK54_RS07595	0.26	-0.9
1,633,731	-		LRK54_RS07595	0.26	-1.2
1,634,387	+		LRK54_RS07595	0.48	-1.7
1,634,387	+		LRK54_RS07595	0.48	-0.6
1,634,387	+		LRK54_RS07595	0.48	-2.9
1,634,388	-		LRK54_RS07595	0.48	+0.6
1,634,388	-		LRK54_RS07595	0.48	-0.7
1,634,388	-		LRK54_RS07595	0.48	-2.0
1,634,597	+		LRK54_RS07595	0.56	-0.9
1,634,597	+		LRK54_RS07595	0.56	-1.5
1,634,597	+		LRK54_RS07595	0.56	-1.4
1,634,597	+		LRK54_RS07595	0.56	-2.0
1,634,597	+		LRK54_RS07595	0.56	-1.6
1,634,597	+		LRK54_RS07595	0.56	-1.2
1,634,597	+		LRK54_RS07595	0.56	-2.2
1,634,597	+		LRK54_RS07595	0.56	+0.6
1,634,597	+		LRK54_RS07595	0.56	+0.3
1,634,597	+		LRK54_RS07595	0.56	-3.3
1,634,597	+		LRK54_RS07595	0.56	+1.6
1,634,597	+		LRK54_RS07595	0.56	-1.8
1,634,597	+		LRK54_RS07595	0.56	+1.6
1,634,598	-		LRK54_RS07595	0.56	+0.6
1,634,598	-		LRK54_RS07595	0.56	-2.1
1,634,598	-		LRK54_RS07595	0.56	-1.7
1,634,598	-		LRK54_RS07595	0.56	-0.7
1,634,598	-		LRK54_RS07595	0.56	-1.1
1,634,598	-		LRK54_RS07595	0.56	-1.6
1,634,598	-		LRK54_RS07595	0.56	+2.1
1,634,598	-		LRK54_RS07595	0.56	-0.8
1,634,598	-		LRK54_RS07595	0.56	+1.6
1,634,969	+		LRK54_RS07595	0.68	-2.8
1,634,969	+		LRK54_RS07595	0.68	-0.4
1,634,969	+		LRK54_RS07595	0.68	-1.1
1,634,969	+		LRK54_RS07595	0.68	-0.1
1,634,969	+		LRK54_RS07595	0.68	-2.1
1,634,969	+		LRK54_RS07595	0.68	-2.4
1,634,970	-		LRK54_RS07595	0.68	-1.8
1,634,970	-		LRK54_RS07595	0.68	+0.9
1,634,970	-		LRK54_RS07595	0.68	-1.2
1,634,970	-		LRK54_RS07595	0.68	-0.3
1,634,970	-		LRK54_RS07595	0.68	-2.7
1,635,012	-		LRK54_RS07595	0.70	+0.9
1,635,012	-		LRK54_RS07595	0.70	-0.6
1,635,109	+		LRK54_RS07595	0.73	-2.1
1,635,109	+		LRK54_RS07595	0.73	-1.2
1,635,109	+		LRK54_RS07595	0.73	-0.3
1,635,109	+		LRK54_RS07595	0.73	-1.3
1,635,109	+		LRK54_RS07595	0.73	+0.2
1,635,109	+		LRK54_RS07595	0.73	+1.2
1,635,109	+		LRK54_RS07595	0.73	-1.6
1,635,110	-		LRK54_RS07595	0.73	-0.9
1,635,110	-		LRK54_RS07595	0.73	-2.4
1,635,110	-		LRK54_RS07595	0.73	-0.4
1,635,110	-		LRK54_RS07595	0.73	-2.6
1,635,143	+		LRK54_RS07595	0.74	-0.6
1,635,143	+		LRK54_RS07595	0.74	-0.6
1,635,143	+		LRK54_RS07595	0.74	-2.3
1,635,143	+		LRK54_RS07595	0.74	-0.3
1,635,143	+		LRK54_RS07595	0.74	+0.0
1,635,144	-		LRK54_RS07595	0.74	+1.6
1,635,144	-		LRK54_RS07595	0.74	+0.0
1,635,254	+		LRK54_RS07595	0.78	-1.5
1,635,254	+		LRK54_RS07595	0.78	-0.1
1,635,254	+		LRK54_RS07595	0.78	-2.0
1,635,254	+		LRK54_RS07595	0.78	+0.9
1,635,254	+		LRK54_RS07595	0.78	-1.9
1,635,254	+		LRK54_RS07595	0.78	+0.9
1,635,254	+		LRK54_RS07595	0.78	-1.7
1,635,254	+		LRK54_RS07595	0.78	+0.2
1,635,255	-		LRK54_RS07595	0.78	-1.5
1,635,255	-		LRK54_RS07595	0.78	-1.4
1,635,255	-		LRK54_RS07595	0.78	-0.4
1,635,255	-		LRK54_RS07595	0.78	-1.8
1,635,255	-		LRK54_RS07595	0.78	+1.3
1,635,307	+		LRK54_RS07595	0.80	+1.2
1,635,308	+		LRK54_RS07595	0.80	+1.0
1,635,308	+		LRK54_RS07595	0.80	-1.0
1,635,308	+		LRK54_RS07595	0.80	-1.7
1,635,308	+		LRK54_RS07595	0.80	+0.4
1,635,308	+		LRK54_RS07595	0.80	-0.6
1,635,308	+		LRK54_RS07595	0.80	-2.8
1,635,309	-		LRK54_RS07595	0.80	+0.6
1,635,309	-		LRK54_RS07595	0.80	-1.3
1,635,309	-		LRK54_RS07595	0.80	-2.0
1,635,309	-		LRK54_RS07595	0.80	+0.6
1,635,309	-		LRK54_RS07595	0.80	-0.1
1,635,309	-		LRK54_RS07595	0.80	-0.4
1,635,426	-		LRK54_RS07595	0.84	-1.5
1,635,426	-		LRK54_RS07595	0.84	+3.2
1,635,575	+		LRK54_RS07595	0.89	+2.2
1,635,575	+		LRK54_RS07595	0.89	+0.6
1,635,575	+		LRK54_RS07595	0.89	-1.3
1,635,575	+		LRK54_RS07595	0.89	+0.4
1,635,575	+		LRK54_RS07595	0.89	-1.6
1,635,575	+		LRK54_RS07595	0.89	+2.2
1,635,575	+		LRK54_RS07595	0.89	-2.5
1,635,575	+		LRK54_RS07595	0.89	-0.3
1,635,575	+		LRK54_RS07595	0.89	-1.1
1,635,575	+		LRK54_RS07595	0.89	-1.3
1,635,575	+		LRK54_RS07595	0.89	+0.1
1,635,575	+		LRK54_RS07595	0.89	-2.0
1,635,575	+		LRK54_RS07595	0.89	-1.7
1,635,575	+		LRK54_RS07595	0.89	+1.2
1,635,575	+		LRK54_RS07595	0.89	-1.3
1,635,575	+		LRK54_RS07595	0.89	-0.1
1,635,575	+		LRK54_RS07595	0.89	-2.6
1,635,575	+		LRK54_RS07595	0.89	+0.2
1,635,575	+		LRK54_RS07595	0.89	+0.0
1,635,575	+		LRK54_RS07595	0.89	-1.4
1,635,575	+		LRK54_RS07595	0.89	-1.0
1,635,575	+		LRK54_RS07595	0.89	-1.2
1,635,575	+		LRK54_RS07595	0.89	-0.5
1,635,575	+		LRK54_RS07595	0.89	+0.4
1,635,575	+		LRK54_RS07595	0.89	-0.9
1,635,575	+		LRK54_RS07595	0.89	-1.2
1,635,575	+		LRK54_RS07595	0.89	-0.6
1,635,575	+		LRK54_RS07595	0.89	+0.9
1,635,575	+		LRK54_RS07595	0.89	+0.9
1,635,575	+		LRK54_RS07595	0.89	+2.4
1,635,575	+		LRK54_RS07595	0.89	-1.9
1,635,576	-		LRK54_RS07595	0.89	-1.7
1,635,576	-		LRK54_RS07595	0.89	-2.4
1,635,576	-		LRK54_RS07595	0.89	-2.8
1,635,576	-		LRK54_RS07595	0.89	-0.7
1,635,576	-		LRK54_RS07595	0.89	+2.6
1,635,576	-		LRK54_RS07595	0.89	-2.1
1,635,576	-		LRK54_RS07595	0.89	-0.4
1,635,576	-		LRK54_RS07595	0.89	+0.9
1,635,576	-		LRK54_RS07595	0.89	+0.9
1,635,576	-		LRK54_RS07595	0.89	+0.2
1,635,576	-		LRK54_RS07595	0.89	-1.3
1,635,576	-		LRK54_RS07595	0.89	-0.8
1,635,576	-		LRK54_RS07595	0.89	-2.1
1,635,576	-		LRK54_RS07595	0.89	+2.2
1,635,576	-		LRK54_RS07595	0.89	+0.2
1,635,576	-		LRK54_RS07595	0.89	+0.6
1,635,576	-		LRK54_RS07595	0.89	+0.0
1,635,576	-		LRK54_RS07595	0.89	-0.5
1,635,576	-		LRK54_RS07595	0.89	-2.3
1,635,576	-		LRK54_RS07595	0.89	+0.6
1,635,576	-		LRK54_RS07595	0.89	+0.4
1,635,576	-		LRK54_RS07595	0.89	+1.6
1,635,576	-		LRK54_RS07595	0.89	-1.2
1,635,576	-		LRK54_RS07595	0.89	+0.4
1,635,576	-		LRK54_RS07595	0.89	-1.5
1,635,576	-		LRK54_RS07595	0.89	-0.7
1,635,576	-		LRK54_RS07595	0.89	-0.8
1,635,576	-		LRK54_RS07595	0.89	-2.5
1,635,576	-		LRK54_RS07595	0.89	-1.9
1,635,576	-		LRK54_RS07595	0.89	-2.4
1,635,576	-		LRK54_RS07595	0.89	+0.6
1,635,576	-		LRK54_RS07595	0.89	+0.9
1,635,576	-		LRK54_RS07595	0.89	-2.9
1,635,576	-		LRK54_RS07595	0.89	+0.2
1,635,576	-		LRK54_RS07595	0.89	-1.1
1,635,576	-		LRK54_RS07595	0.89	-1.4
1,635,579	-		LRK54_RS07595	0.89	-1.7
1,635,587	+		LRK54_RS07595	0.90	+1.2
1,635,587	+		LRK54_RS07595	0.90	-0.6
1,635,588	-		LRK54_RS07595	0.90	-0.6
1,635,588	-		LRK54_RS07595	0.90	-0.6
1,635,588	-		LRK54_RS07595	0.90	+0.4
1,635,588	-		LRK54_RS07595	0.90	-0.5
1,635,732	-				+0.2
1,635,996	+				-1.3
1,636,057	+				-1.5
1,636,057	+				-1.9
1,636,057	+				+0.6
1,636,057	+				+0.3
1,636,057	+				-2.7
1,636,057	+				-0.1
1,636,057	+				+0.8
1,636,057	+				-2.8
1,636,057	+				-2.6
1,636,057	+				-1.0
1,636,058	-				-1.1
1,636,058	-				-1.7
1,636,058	-				+1.2
1,636,058	-				+1.4
1,636,058	-				+0.9
1,636,058	-				-2.4
1,636,058	-				-0.6
1,636,058	-				+0.0
1,636,058	-				-0.3
1,636,058	-				-0.1
1,636,059	+				-2.8
1,636,059	+				+3.2
1,636,059	+				-2.3
1,636,059	+				+0.6
1,636,059	+				+0.6
1,636,112	+				-0.6
1,636,112	+				+0.7
1,636,112	+				+0.6
1,636,112	+				-2.6
1,636,112	+				+1.4
1,636,112	+				-0.6
1,636,113	-				-0.7
1,636,113	-				-0.5
1,636,113	-				+3.2
1,636,113	-				+0.0
1,636,113	-				-0.7
1,636,113	-				-1.1
1,636,113	-				-0.3
1,636,123	+				+0.1
1,636,124	-				+0.4
1,636,124	-				+2.6
1,636,124	-				+0.2
1,636,139	+				+1.2
1,636,139	+				-0.1
1,636,266	+		LRK54_RS07600	0.11	-0.4
1,636,266	+		LRK54_RS07600	0.11	+0.9
1,636,266	+		LRK54_RS07600	0.11	-0.8
1,636,267	-		LRK54_RS07600	0.11	-0.1
1,636,267	-		LRK54_RS07600	0.11	-1.4
1,636,267	-		LRK54_RS07600	0.11	-1.1
1,636,267	-		LRK54_RS07600	0.11	-0.3
1,636,267	-		LRK54_RS07600	0.11	-0.4
1,636,267	-		LRK54_RS07600	0.11	-0.7
1,636,267	-		LRK54_RS07600	0.11	-1.4
1,636,267	-		LRK54_RS07600	0.11	-0.6
1,636,267	-		LRK54_RS07600	0.11	-1.7
1,636,268	+		LRK54_RS07600	0.11	-1.7
1,636,268	+		LRK54_RS07600	0.11	-1.1
1,636,268	+		LRK54_RS07600	0.11	+0.9
1,636,269	-		LRK54_RS07600	0.11	-2.0
1,636,269	-		LRK54_RS07600	0.11	-0.3
1,636,269	-		LRK54_RS07600	0.11	+0.4
1,636,269	-		LRK54_RS07600	0.11	-0.3
1,636,269	-		LRK54_RS07600	0.11	+2.2
1,636,269	-		LRK54_RS07600	0.11	-1.9
1,636,485	+		LRK54_RS07600	0.44	-0.4
1,636,486	-		LRK54_RS07600	0.44	-1.5
1,636,486	-		LRK54_RS07600	0.44	+0.6
1,636,486	-		LRK54_RS07600	0.44	-0.7
1,636,728	+		LRK54_RS07600	0.80	-0.3
1,636,728	+		LRK54_RS07600	0.80	+1.2
1,636,728	+		LRK54_RS07600	0.80	-2.6
1,636,728	+		LRK54_RS07600	0.80	-2.7
1,636,728	+		LRK54_RS07600	0.80	+0.4
1,636,729	-		LRK54_RS07600	0.80	+0.7
1,636,729	-		LRK54_RS07600	0.80	+0.0
1,636,833	+				-0.3
1,636,833	+				-0.8
1,636,833	+				+0.4
1,636,833	+				-1.7
1,636,834	-				+0.6
1,636,834	-				-0.5
1,636,834	-				-0.4
1,636,834	-				-1.6