Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07580

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS07565 and LRK54_RS07570 are separated by 150 nucleotidesLRK54_RS07570 and LRK54_RS07575 overlap by 4 nucleotidesLRK54_RS07575 and LRK54_RS07580 overlap by 4 nucleotidesLRK54_RS07580 and LRK54_RS07585 overlap by 4 nucleotides LRK54_RS07565: LRK54_RS07565 - Fic family protein, at 1,628,457 to 1,629,785 _RS07565 LRK54_RS07570: LRK54_RS07570 - monovalent cation/H(+) antiporter subunit G, at 1,629,936 to 1,630,289 _RS07570 LRK54_RS07575: LRK54_RS07575 - K+/H+ antiporter subunit F, at 1,630,286 to 1,630,567 _RS07575 LRK54_RS07580: LRK54_RS07580 - Na+/H+ antiporter subunit E, at 1,630,564 to 1,631,052 _RS07580 LRK54_RS07585: LRK54_RS07585 - monovalent cation/H+ antiporter subunit D, at 1,631,049 to 1,632,647 _RS07585 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.663 kb on + strandat 1629.664 kb on - strandat 1629.664 kb on - strandat 1629.664 kb on - strandat 1629.664 kb on - strandat 1629.664 kb on - strandat 1629.664 kb on - strandat 1629.847 kb on + strandat 1629.847 kb on + strandat 1629.847 kb on + strandat 1629.847 kb on + strandat 1629.847 kb on + strandat 1629.848 kb on - strandat 1629.848 kb on - strandat 1629.848 kb on - strandat 1629.855 kb on - strandat 1629.919 kb on + strandat 1629.919 kb on + strandat 1629.991 kb on + strand, within LRK54_RS07570at 1630.066 kb on + strand, within LRK54_RS07570at 1630.066 kb on + strand, within LRK54_RS07570at 1630.066 kb on + strand, within LRK54_RS07570at 1630.067 kb on - strand, within LRK54_RS07570at 1630.067 kb on - strand, within LRK54_RS07570at 1630.377 kb on + strand, within LRK54_RS07575at 1630.377 kb on + strand, within LRK54_RS07575at 1630.377 kb on + strand, within LRK54_RS07575at 1630.377 kb on + strand, within LRK54_RS07575at 1630.377 kb on + strand, within LRK54_RS07575at 1630.378 kb on - strand, within LRK54_RS07575at 1630.378 kb on - strand, within LRK54_RS07575at 1630.378 kb on - strand, within LRK54_RS07575at 1630.378 kb on - strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.434 kb on + strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.435 kb on - strand, within LRK54_RS07575at 1630.595 kb on + strandat 1630.596 kb on - strandat 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.679 kb on + strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.680 kb on - strand, within LRK54_RS07580at 1630.740 kb on - strand, within LRK54_RS07580at 1631.089 kb on + strandat 1631.089 kb on + strandat 1631.089 kb on + strandat 1631.090 kb on - strandat 1631.131 kb on + strandat 1631.132 kb on - strandat 1631.132 kb on - strandat 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.494 kb on + strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.495 kb on - strand, within LRK54_RS07585at 1631.533 kb on + strand, within LRK54_RS07585at 1631.533 kb on + strand, within LRK54_RS07585at 1631.534 kb on - strand, within LRK54_RS07585at 1631.534 kb on - strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.638 kb on + strand, within LRK54_RS07585at 1631.639 kb on - strand, within LRK54_RS07585at 1631.639 kb on - strand, within LRK54_RS07585at 1631.639 kb on - strand, within LRK54_RS07585at 1631.639 kb on - strand, within LRK54_RS07585at 1631.719 kb on + strand, within LRK54_RS07585at 1631.720 kb on - strand, within LRK54_RS07585at 1631.720 kb on - strand, within LRK54_RS07585at 1631.720 kb on - strand, within LRK54_RS07585at 1631.878 kb on + strand, within LRK54_RS07585at 1631.878 kb on + strand, within LRK54_RS07585at 1631.878 kb on + strand, within LRK54_RS07585at 1631.878 kb on + strand, within LRK54_RS07585at 1631.878 kb on + strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.879 kb on - strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.938 kb on + strand, within LRK54_RS07585at 1631.939 kb on - strand, within LRK54_RS07585at 1631.939 kb on - strand, within LRK54_RS07585at 1631.939 kb on - strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.942 kb on + strand, within LRK54_RS07585at 1631.943 kb on - strand, within LRK54_RS07585at 1631.943 kb on - strand, within LRK54_RS07585at 1631.943 kb on - strand, within LRK54_RS07585at 1631.943 kb on - strand, within LRK54_RS07585at 1631.943 kb on - strand, within LRK54_RS07585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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1,629,663 + +0.4
1,629,663 + -0.9
1,629,663 + -0.9
1,629,663 + -0.1
1,629,663 + +0.9
1,629,663 + +2.6
1,629,663 + -0.3
1,629,664 - +0.2
1,629,664 - -0.5
1,629,664 - -0.1
1,629,664 - +1.6
1,629,664 - -2.2
1,629,664 - +0.0
1,629,847 + -1.2
1,629,847 + +0.4
1,629,847 + +0.9
1,629,847 + -2.1
1,629,847 + -3.1
1,629,848 - -1.1
1,629,848 - -1.0
1,629,848 - +0.3
1,629,855 - +2.2
1,629,919 + -2.1
1,629,919 + -0.4
1,629,991 + LRK54_RS07570 0.16 +0.6
1,630,066 + LRK54_RS07570 0.37 -0.1
1,630,066 + LRK54_RS07570 0.37 -0.6
1,630,066 + LRK54_RS07570 0.37 +0.0
1,630,067 - LRK54_RS07570 0.37 -0.1
1,630,067 - LRK54_RS07570 0.37 -2.3
1,630,377 + LRK54_RS07575 0.32 +0.0
1,630,377 + LRK54_RS07575 0.32 -1.9
1,630,377 + LRK54_RS07575 0.32 -1.7
1,630,377 + LRK54_RS07575 0.32 -2.9
1,630,377 + LRK54_RS07575 0.32 +0.6
1,630,378 - LRK54_RS07575 0.33 +0.2
1,630,378 - LRK54_RS07575 0.33 -2.2
1,630,378 - LRK54_RS07575 0.33 +3.2
1,630,378 - LRK54_RS07575 0.33 +1.2
1,630,434 + LRK54_RS07575 0.52 -1.8
1,630,434 + LRK54_RS07575 0.52 -0.7
1,630,434 + LRK54_RS07575 0.52 +1.2
1,630,434 + LRK54_RS07575 0.52 -0.8
1,630,434 + LRK54_RS07575 0.52 -0.4
1,630,434 + LRK54_RS07575 0.52 +1.6
1,630,435 - LRK54_RS07575 0.53 -2.0
1,630,435 - LRK54_RS07575 0.53 -2.3
1,630,435 - LRK54_RS07575 0.53 -1.2
1,630,435 - LRK54_RS07575 0.53 -1.1
1,630,435 - LRK54_RS07575 0.53 +0.2
1,630,435 - LRK54_RS07575 0.53 +1.6
1,630,435 - LRK54_RS07575 0.53 +0.4
1,630,435 - LRK54_RS07575 0.53 -1.9
1,630,435 - LRK54_RS07575 0.53 +1.2
1,630,435 - LRK54_RS07575 0.53 -2.1
1,630,595 + -0.1
1,630,596 - -0.7
1,630,679 + LRK54_RS07580 0.24 +0.4
1,630,679 + LRK54_RS07580 0.24 -2.3
1,630,679 + LRK54_RS07580 0.24 +1.1
1,630,679 + LRK54_RS07580 0.24 -1.0
1,630,679 + LRK54_RS07580 0.24 -0.4
1,630,679 + LRK54_RS07580 0.24 -2.5
1,630,679 + LRK54_RS07580 0.24 -2.6
1,630,680 - LRK54_RS07580 0.24 -1.0
1,630,680 - LRK54_RS07580 0.24 -0.5
1,630,680 - LRK54_RS07580 0.24 -1.3
1,630,680 - LRK54_RS07580 0.24 -0.5
1,630,680 - LRK54_RS07580 0.24 -3.6
1,630,680 - LRK54_RS07580 0.24 -0.9
1,630,680 - LRK54_RS07580 0.24 -2.5
1,630,680 - LRK54_RS07580 0.24 +1.6
1,630,740 - LRK54_RS07580 0.36 -1.7
1,631,089 + +0.4
1,631,089 + -1.3
1,631,089 + -1.1
1,631,090 - -1.7
1,631,131 + -1.5
1,631,132 - -2.3
1,631,132 - -2.0
1,631,494 + LRK54_RS07585 0.28 +0.2
1,631,494 + LRK54_RS07585 0.28 +0.2
1,631,494 + LRK54_RS07585 0.28 -0.1
1,631,494 + LRK54_RS07585 0.28 -0.8
1,631,494 + LRK54_RS07585 0.28 -2.6
1,631,494 + LRK54_RS07585 0.28 +1.6
1,631,494 + LRK54_RS07585 0.28 +2.2
1,631,494 + LRK54_RS07585 0.28 -2.0
1,631,494 + LRK54_RS07585 0.28 -2.4
1,631,494 + LRK54_RS07585 0.28 -1.6
1,631,494 + LRK54_RS07585 0.28 -1.1
1,631,494 + LRK54_RS07585 0.28 -1.7
1,631,494 + LRK54_RS07585 0.28 -1.9
1,631,494 + LRK54_RS07585 0.28 -1.5
1,631,494 + LRK54_RS07585 0.28 +0.0
1,631,495 - LRK54_RS07585 0.28 -1.1
1,631,495 - LRK54_RS07585 0.28 +0.4
1,631,495 - LRK54_RS07585 0.28 -1.5
1,631,495 - LRK54_RS07585 0.28 -1.7
1,631,495 - LRK54_RS07585 0.28 -1.5
1,631,495 - LRK54_RS07585 0.28 -1.9
1,631,495 - LRK54_RS07585 0.28 -3.0
1,631,495 - LRK54_RS07585 0.28 +0.6
1,631,495 - LRK54_RS07585 0.28 -1.1
1,631,495 - LRK54_RS07585 0.28 +1.9
1,631,495 - LRK54_RS07585 0.28 +0.0
1,631,495 - LRK54_RS07585 0.28 -1.6
1,631,495 - LRK54_RS07585 0.28 -2.3
1,631,495 - LRK54_RS07585 0.28 -0.8
1,631,495 - LRK54_RS07585 0.28 -0.3
1,631,495 - LRK54_RS07585 0.28 -1.1
1,631,533 + LRK54_RS07585 0.30 -1.9
1,631,533 + LRK54_RS07585 0.30 -1.8
1,631,534 - LRK54_RS07585 0.30 -1.1
1,631,534 - LRK54_RS07585 0.30 +0.9
1,631,638 + LRK54_RS07585 0.37 -3.6
1,631,638 + LRK54_RS07585 0.37 +0.4
1,631,638 + LRK54_RS07585 0.37 +0.0
1,631,638 + LRK54_RS07585 0.37 -2.8
1,631,638 + LRK54_RS07585 0.37 -2.1
1,631,638 + LRK54_RS07585 0.37 -2.0
1,631,638 + LRK54_RS07585 0.37 -0.3
1,631,639 - LRK54_RS07585 0.37 -2.0
1,631,639 - LRK54_RS07585 0.37 -1.2
1,631,639 - LRK54_RS07585 0.37 -3.2
1,631,639 - LRK54_RS07585 0.37 -1.6
1,631,719 + LRK54_RS07585 0.42 -0.4
1,631,720 - LRK54_RS07585 0.42 +0.9
1,631,720 - LRK54_RS07585 0.42 +1.2
1,631,720 - LRK54_RS07585 0.42 -0.3
1,631,878 + LRK54_RS07585 0.52 -3.1
1,631,878 + LRK54_RS07585 0.52 +1.6
1,631,878 + LRK54_RS07585 0.52 -0.1
1,631,878 + LRK54_RS07585 0.52 +0.2
1,631,878 + LRK54_RS07585 0.52 -1.4
1,631,879 - LRK54_RS07585 0.52 -2.0
1,631,879 - LRK54_RS07585 0.52 -1.5
1,631,879 - LRK54_RS07585 0.52 +0.9
1,631,879 - LRK54_RS07585 0.52 -1.1
1,631,879 - LRK54_RS07585 0.52 +1.2
1,631,879 - LRK54_RS07585 0.52 -0.4
1,631,879 - LRK54_RS07585 0.52 -1.3
1,631,938 + LRK54_RS07585 0.56 -0.8
1,631,938 + LRK54_RS07585 0.56 -1.3
1,631,938 + LRK54_RS07585 0.56 -2.8
1,631,938 + LRK54_RS07585 0.56 -2.6
1,631,938 + LRK54_RS07585 0.56 -1.1
1,631,938 + LRK54_RS07585 0.56 +0.4
1,631,939 - LRK54_RS07585 0.56 +0.2
1,631,939 - LRK54_RS07585 0.56 -1.1
1,631,939 - LRK54_RS07585 0.56 -0.6
1,631,942 + LRK54_RS07585 0.56 -1.6
1,631,942 + LRK54_RS07585 0.56 +0.9
1,631,942 + LRK54_RS07585 0.56 -1.9
1,631,942 + LRK54_RS07585 0.56 -2.7
1,631,942 + LRK54_RS07585 0.56 -1.8
1,631,942 + LRK54_RS07585 0.56 -0.3
1,631,942 + LRK54_RS07585 0.56 +1.2
1,631,942 + LRK54_RS07585 0.56 -1.1
1,631,943 - LRK54_RS07585 0.56 -0.7
1,631,943 - LRK54_RS07585 0.56 -2.7
1,631,943 - LRK54_RS07585 0.56 -2.9
1,631,943 - LRK54_RS07585 0.56 -2.1
1,631,943 - LRK54_RS07585 0.56 -2.2

Or see this region's nucleotide sequence