Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07540

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS07535 and LRK54_RS07540 overlap by 4 nucleotidesLRK54_RS07540 and LRK54_RS07545 overlap by 4 nucleotidesLRK54_RS07545 and LRK54_RS07550 overlap by 4 nucleotides LRK54_RS07535: LRK54_RS07535 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,623,564 to 1,624,859 _RS07535 LRK54_RS07540: LRK54_RS07540 - DUF2878 domain-containing protein, at 1,624,856 to 1,625,416 _RS07540 LRK54_RS07545: LRK54_RS07545 - DUF1295 domain-containing protein, at 1,625,413 to 1,626,195 _RS07545 LRK54_RS07550: LRK54_RS07550 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,626,192 to 1,627,274 _RS07550 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1624.002 kb on + strand, within LRK54_RS07535at 1624.002 kb on + strand, within LRK54_RS07535at 1624.002 kb on + strand, within LRK54_RS07535at 1624.003 kb on - strand, within LRK54_RS07535at 1624.003 kb on - strand, within LRK54_RS07535at 1624.003 kb on - strand, within LRK54_RS07535at 1624.003 kb on - strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.053 kb on + strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.054 kb on - strand, within LRK54_RS07535at 1624.197 kb on + strand, within LRK54_RS07535at 1624.197 kb on + strand, within LRK54_RS07535at 1624.198 kb on - strand, within LRK54_RS07535at 1624.212 kb on + strand, within LRK54_RS07535at 1624.212 kb on + strand, within LRK54_RS07535at 1624.213 kb on - strand, within LRK54_RS07535at 1624.323 kb on + strand, within LRK54_RS07535at 1624.323 kb on + strand, within LRK54_RS07535at 1624.344 kb on + strand, within LRK54_RS07535at 1624.345 kb on - strand, within LRK54_RS07535at 1624.392 kb on + strand, within LRK54_RS07535at 1624.393 kb on - strand, within LRK54_RS07535at 1624.404 kb on + strand, within LRK54_RS07535at 1624.405 kb on - strand, within LRK54_RS07535at 1624.405 kb on - strand, within LRK54_RS07535at 1624.626 kb on + strand, within LRK54_RS07535at 1624.627 kb on - strand, within LRK54_RS07535at 1624.627 kb on - strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.728 kb on + strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.729 kb on - strand, within LRK54_RS07535at 1624.737 kb on + strandat 1624.738 kb on - strandat 1624.961 kb on + strand, within LRK54_RS07540at 1624.962 kb on - strand, within LRK54_RS07540at 1624.994 kb on - strand, within LRK54_RS07540at 1625.082 kb on - strand, within LRK54_RS07540at 1625.082 kb on - strand, within LRK54_RS07540at 1625.082 kb on - strand, within LRK54_RS07540at 1625.234 kb on + strand, within LRK54_RS07540at 1625.234 kb on + strand, within LRK54_RS07540at 1625.234 kb on + strand, within LRK54_RS07540at 1625.235 kb on - strand, within LRK54_RS07540at 1625.235 kb on - strand, within LRK54_RS07540at 1625.235 kb on - strand, within LRK54_RS07540at 1625.922 kb on + strand, within LRK54_RS07545at 1625.922 kb on + strand, within LRK54_RS07545at 1625.922 kb on + strand, within LRK54_RS07545at 1625.923 kb on - strand, within LRK54_RS07545at 1625.923 kb on - strand, within LRK54_RS07545at 1625.923 kb on - strand, within LRK54_RS07545at 1625.923 kb on - strand, within LRK54_RS07545at 1625.948 kb on - strand, within LRK54_RS07545at 1625.948 kb on - strand, within LRK54_RS07545at 1625.965 kb on + strand, within LRK54_RS07545at 1625.965 kb on + strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.966 kb on - strand, within LRK54_RS07545at 1625.995 kb on + strand, within LRK54_RS07545at 1625.995 kb on + strand, within LRK54_RS07545at 1625.995 kb on + strand, within LRK54_RS07545at 1625.996 kb on - strand, within LRK54_RS07545at 1625.996 kb on - strand, within LRK54_RS07545at 1625.996 kb on - strand, within LRK54_RS07545at 1625.996 kb on - strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.058 kb on + strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.059 kb on - strand, within LRK54_RS07545at 1626.091 kb on + strand, within LRK54_RS07545at 1626.091 kb on + strand, within LRK54_RS07545at 1626.092 kb on - strand, within LRK54_RS07545at 1626.092 kb on - strand, within LRK54_RS07545at 1626.130 kb on + strandat 1626.131 kb on - strandat 1626.140 kb on - strandat 1626.141 kb on - strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.197 kb on + strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strandat 1626.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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1,624,002 + LRK54_RS07535 0.34 -0.7
1,624,002 + LRK54_RS07535 0.34 +0.5
1,624,002 + LRK54_RS07535 0.34 +0.9
1,624,003 - LRK54_RS07535 0.34 -1.0
1,624,003 - LRK54_RS07535 0.34 -2.0
1,624,003 - LRK54_RS07535 0.34 -1.5
1,624,003 - LRK54_RS07535 0.34 +0.4
1,624,053 + LRK54_RS07535 0.38 +0.1
1,624,053 + LRK54_RS07535 0.38 +1.2
1,624,053 + LRK54_RS07535 0.38 -2.0
1,624,053 + LRK54_RS07535 0.38 -1.4
1,624,053 + LRK54_RS07535 0.38 -0.2
1,624,053 + LRK54_RS07535 0.38 -1.9
1,624,053 + LRK54_RS07535 0.38 +0.4
1,624,053 + LRK54_RS07535 0.38 -1.4
1,624,053 + LRK54_RS07535 0.38 -1.6
1,624,053 + LRK54_RS07535 0.38 -1.5
1,624,053 + LRK54_RS07535 0.38 -1.6
1,624,053 + LRK54_RS07535 0.38 -0.5
1,624,054 - LRK54_RS07535 0.38 +1.2
1,624,054 - LRK54_RS07535 0.38 -0.4
1,624,054 - LRK54_RS07535 0.38 -0.7
1,624,054 - LRK54_RS07535 0.38 +1.3
1,624,054 - LRK54_RS07535 0.38 -2.1
1,624,054 - LRK54_RS07535 0.38 -1.7
1,624,054 - LRK54_RS07535 0.38 +0.0
1,624,054 - LRK54_RS07535 0.38 -1.2
1,624,054 - LRK54_RS07535 0.38 -0.8
1,624,197 + LRK54_RS07535 0.49 -0.3
1,624,197 + LRK54_RS07535 0.49 -0.5
1,624,198 - LRK54_RS07535 0.49 -0.2
1,624,212 + LRK54_RS07535 0.50 -0.1
1,624,212 + LRK54_RS07535 0.50 -1.1
1,624,213 - LRK54_RS07535 0.50 -0.3
1,624,323 + LRK54_RS07535 0.59 -1.4
1,624,323 + LRK54_RS07535 0.59 -1.6
1,624,344 + LRK54_RS07535 0.60 -0.5
1,624,345 - LRK54_RS07535 0.60 +3.2
1,624,392 + LRK54_RS07535 0.64 -0.2
1,624,393 - LRK54_RS07535 0.64 +1.4
1,624,404 + LRK54_RS07535 0.65 -0.5
1,624,405 - LRK54_RS07535 0.65 +0.2
1,624,405 - LRK54_RS07535 0.65 -1.5
1,624,626 + LRK54_RS07535 0.82 -0.9
1,624,627 - LRK54_RS07535 0.82 -1.5
1,624,627 - LRK54_RS07535 0.82 +0.2
1,624,728 + LRK54_RS07535 0.90 +3.2
1,624,728 + LRK54_RS07535 0.90 +0.1
1,624,728 + LRK54_RS07535 0.90 +0.9
1,624,728 + LRK54_RS07535 0.90 -0.6
1,624,728 + LRK54_RS07535 0.90 -1.4
1,624,728 + LRK54_RS07535 0.90 -0.3
1,624,728 + LRK54_RS07535 0.90 -0.3
1,624,728 + LRK54_RS07535 0.90 -1.5
1,624,728 + LRK54_RS07535 0.90 +0.4
1,624,728 + LRK54_RS07535 0.90 +0.5
1,624,729 - LRK54_RS07535 0.90 -0.8
1,624,729 - LRK54_RS07535 0.90 +1.2
1,624,729 - LRK54_RS07535 0.90 +0.6
1,624,729 - LRK54_RS07535 0.90 +0.0
1,624,729 - LRK54_RS07535 0.90 +0.4
1,624,729 - LRK54_RS07535 0.90 -1.2
1,624,729 - LRK54_RS07535 0.90 +1.2
1,624,729 - LRK54_RS07535 0.90 -2.1
1,624,737 + +1.6
1,624,738 - -1.9
1,624,961 + LRK54_RS07540 0.19 -1.8
1,624,962 - LRK54_RS07540 0.19 +0.0
1,624,994 - LRK54_RS07540 0.25 -0.3
1,625,082 - LRK54_RS07540 0.40 -1.2
1,625,082 - LRK54_RS07540 0.40 -0.8
1,625,082 - LRK54_RS07540 0.40 -0.4
1,625,234 + LRK54_RS07540 0.67 -0.2
1,625,234 + LRK54_RS07540 0.67 -0.5
1,625,234 + LRK54_RS07540 0.67 -2.2
1,625,235 - LRK54_RS07540 0.68 -0.6
1,625,235 - LRK54_RS07540 0.68 -1.5
1,625,235 - LRK54_RS07540 0.68 +1.6
1,625,922 + LRK54_RS07545 0.65 -0.9
1,625,922 + LRK54_RS07545 0.65 -0.7
1,625,922 + LRK54_RS07545 0.65 +0.6
1,625,923 - LRK54_RS07545 0.65 +0.0
1,625,923 - LRK54_RS07545 0.65 +1.6
1,625,923 - LRK54_RS07545 0.65 -2.2
1,625,923 - LRK54_RS07545 0.65 +0.8
1,625,948 - LRK54_RS07545 0.68 +0.3
1,625,948 - LRK54_RS07545 0.68 -1.7
1,625,965 + LRK54_RS07545 0.70 -1.3
1,625,965 + LRK54_RS07545 0.70 -1.1
1,625,966 - LRK54_RS07545 0.71 -1.4
1,625,966 - LRK54_RS07545 0.71 -1.0
1,625,966 - LRK54_RS07545 0.71 +0.0
1,625,966 - LRK54_RS07545 0.71 +0.8
1,625,966 - LRK54_RS07545 0.71 -1.2
1,625,966 - LRK54_RS07545 0.71 +1.4
1,625,966 - LRK54_RS07545 0.71 -1.1
1,625,966 - LRK54_RS07545 0.71 +0.1
1,625,966 - LRK54_RS07545 0.71 +1.2
1,625,966 - LRK54_RS07545 0.71 +1.4
1,625,966 - LRK54_RS07545 0.71 -0.9
1,625,966 - LRK54_RS07545 0.71 +1.6
1,625,995 + LRK54_RS07545 0.74 +1.6
1,625,995 + LRK54_RS07545 0.74 -2.2
1,625,995 + LRK54_RS07545 0.74 +0.4
1,625,996 - LRK54_RS07545 0.74 -1.1
1,625,996 - LRK54_RS07545 0.74 -0.1
1,625,996 - LRK54_RS07545 0.74 +0.8
1,625,996 - LRK54_RS07545 0.74 -1.0
1,626,058 + LRK54_RS07545 0.82 +0.6
1,626,058 + LRK54_RS07545 0.82 -1.2
1,626,058 + LRK54_RS07545 0.82 -0.7
1,626,058 + LRK54_RS07545 0.82 -0.2
1,626,058 + LRK54_RS07545 0.82 -1.6
1,626,058 + LRK54_RS07545 0.82 -1.7
1,626,058 + LRK54_RS07545 0.82 +0.3
1,626,058 + LRK54_RS07545 0.82 -0.2
1,626,058 + LRK54_RS07545 0.82 +0.6
1,626,058 + LRK54_RS07545 0.82 -1.0
1,626,058 + LRK54_RS07545 0.82 -0.6
1,626,058 + LRK54_RS07545 0.82 +0.8
1,626,058 + LRK54_RS07545 0.82 -1.2
1,626,058 + LRK54_RS07545 0.82 -1.4
1,626,058 + LRK54_RS07545 0.82 -1.0
1,626,059 - LRK54_RS07545 0.83 -0.2
1,626,059 - LRK54_RS07545 0.83 -0.4
1,626,059 - LRK54_RS07545 0.83 +0.4
1,626,059 - LRK54_RS07545 0.83 +0.0
1,626,059 - LRK54_RS07545 0.83 +1.2
1,626,059 - LRK54_RS07545 0.83 +2.2
1,626,059 - LRK54_RS07545 0.83 -1.8
1,626,059 - LRK54_RS07545 0.83 -0.7
1,626,059 - LRK54_RS07545 0.83 -2.1
1,626,059 - LRK54_RS07545 0.83 -1.7
1,626,059 - LRK54_RS07545 0.83 -1.3
1,626,059 - LRK54_RS07545 0.83 -0.3
1,626,059 - LRK54_RS07545 0.83 +1.1
1,626,059 - LRK54_RS07545 0.83 +0.4
1,626,059 - LRK54_RS07545 0.83 +0.0
1,626,091 + LRK54_RS07545 0.87 -1.1
1,626,091 + LRK54_RS07545 0.87 -1.0
1,626,092 - LRK54_RS07545 0.87 +0.0
1,626,092 - LRK54_RS07545 0.87 +0.0
1,626,130 + -2.7
1,626,131 - +0.8
1,626,140 - +0.1
1,626,141 - +0.4
1,626,197 + +0.2
1,626,197 + -0.3
1,626,197 + +1.0
1,626,197 + +1.2
1,626,197 + +1.2
1,626,197 + +1.6
1,626,197 + -1.7
1,626,197 + -0.2
1,626,198 - +0.2
1,626,198 - +0.4
1,626,198 - +3.2
1,626,198 - -2.8
1,626,198 - -0.5
1,626,198 - +0.6
1,626,198 - -2.6
1,626,198 - -2.1

Or see this region's nucleotide sequence