Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07055

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,509,354	-		LRK54_RS07040	0.45	+0.1
1,509,354	-		LRK54_RS07040	0.45	-0.5
1,509,419	+		LRK54_RS07040	0.59	+0.2
1,509,419	+		LRK54_RS07040	0.59	-1.2
1,509,419	+		LRK54_RS07040	0.59	-0.0
1,509,419	+		LRK54_RS07040	0.59	-1.3
1,509,419	+		LRK54_RS07040	0.59	-0.8
1,509,419	+		LRK54_RS07040	0.59	-0.2
1,509,419	+		LRK54_RS07040	0.59	-0.3
1,509,419	+		LRK54_RS07040	0.59	-0.0
1,509,419	+		LRK54_RS07040	0.59	-0.0
1,509,419	+		LRK54_RS07040	0.59	+0.2
1,509,419	+		LRK54_RS07040	0.59	-0.6
1,509,419	+		LRK54_RS07040	0.59	-1.0
1,509,419	+		LRK54_RS07040	0.59	-0.5
1,509,420	-		LRK54_RS07040	0.59	+0.6
1,509,420	-		LRK54_RS07040	0.59	+3.2
1,509,420	-		LRK54_RS07040	0.59	-2.0
1,509,420	-		LRK54_RS07040	0.59	+0.8
1,509,420	-		LRK54_RS07040	0.59	-0.5
1,509,420	-		LRK54_RS07040	0.59	+1.4
1,509,420	-		LRK54_RS07040	0.59	-0.1
1,509,420	-		LRK54_RS07040	0.59	-0.4
1,509,420	-		LRK54_RS07040	0.59	+0.2
1,509,715	+		LRK54_RS07045	0.43	-2.1
1,509,715	+		LRK54_RS07045	0.43	-0.0
1,509,715	+		LRK54_RS07045	0.43	-0.3
1,509,715	+		LRK54_RS07045	0.43	-0.6
1,509,715	+		LRK54_RS07045	0.43	-0.9
1,509,716	-		LRK54_RS07045	0.43	-2.3
1,509,716	-		LRK54_RS07045	0.43	-0.5
1,509,716	-		LRK54_RS07045	0.43	+2.2
1,509,716	-		LRK54_RS07045	0.43	-0.9
1,509,716	-		LRK54_RS07045	0.43	-1.2
1,509,716	-		LRK54_RS07045	0.43	-0.8
1,509,716	-		LRK54_RS07045	0.43	+1.2
1,509,716	-		LRK54_RS07045	0.43	-2.0
1,509,716	-		LRK54_RS07045	0.43	-0.2
1,509,822	-		LRK54_RS07045	0.77	-1.6
1,509,822	-		LRK54_RS07045	0.77	-2.2
1,509,881	+				-1.6
1,509,881	+				-1.6
1,509,881	+				-3.7
1,509,881	+				+0.6
1,509,881	+				-3.0
1,509,881	+				+1.2
1,509,881	+				-0.4
1,509,881	+				-1.1
1,509,881	+				-0.7
1,509,882	-				-2.7
1,509,882	-				-0.4
1,509,882	-				-1.6
1,509,882	-				+0.2
1,509,882	-				-0.9
1,509,882	-				-0.0
1,509,882	-				+0.2
1,509,983	+				+2.2
1,509,983	+				+1.3
1,509,984	-				-0.8
1,509,984	-				-0.6
1,509,984	-				-0.9
1,509,984	-				+1.2
1,509,984	-				-0.4
1,509,984	-				+1.6
1,509,984	-				+0.8
1,509,984	-				-2.7
1,509,984	-				+0.6
1,510,210	+				+0.5
1,510,210	+				+0.2
1,510,210	+				+0.4
1,510,210	+				+0.0
1,510,210	+				+1.4
1,510,210	+				+1.8
1,510,210	+				-0.6
1,510,210	+				+0.2
1,510,210	+				-0.5
1,510,210	+				-0.3
1,510,210	+				+0.9
1,510,210	+				+0.4
1,510,210	+				-2.1
1,510,211	-				+1.2
1,510,211	-				-1.3
1,510,211	-				-0.7
1,510,211	-				-1.3
1,510,211	-				-0.5
1,510,211	-				-1.2
1,510,211	-				-0.8
1,510,211	-				-1.2
1,510,211	-				-0.5
1,510,211	-				-2.4
1,510,211	-				-1.9
1,510,211	-				+1.7
1,510,211	-				+0.9
1,510,211	-				-0.7
1,510,290	+				-0.0
1,510,290	+				+0.3
1,510,290	+				+0.6
1,510,290	+				+0.6
1,510,290	+				-0.2
1,510,290	+				-0.4
1,510,290	+				-1.3
1,510,290	+				+1.6
1,510,290	+				+0.8
1,510,290	+				-0.2
1,510,290	+				-1.2
1,510,291	-				+0.2
1,510,291	-				-1.6
1,510,291	-				+0.9
1,510,291	-				-1.0
1,510,291	-				-0.2
1,510,295	+				-1.2
1,510,295	+				-1.8
1,510,295	+				+1.2
1,510,295	+				+0.2
1,510,295	+				+2.2
1,510,295	+				+0.4
1,510,295	+				+3.2
1,510,295	+				+2.2
1,510,295	+				-1.6
1,510,295	+				+2.2
1,510,295	+				+0.2
1,510,295	+				-0.2
1,510,295	+				+0.4
1,510,295	+				-0.4
1,510,295	+				-0.8
1,510,296	-				+0.8
1,510,296	-				+0.9
1,510,296	-				-0.4
1,510,296	-				-0.0
1,510,296	-				-1.7
1,510,296	-				+2.5
1,510,296	-				+0.5
1,510,296	-				+3.1
1,510,296	-				-0.3
1,510,296	-				+1.6
1,510,296	-				+2.0
1,510,304	+				+0.6
1,510,304	+				-1.6
1,510,304	+				+1.6
1,510,304	+				-0.4
1,510,304	+				+0.4
1,510,304	+				-0.8
1,510,304	+				-2.9
1,510,304	+				+0.3
1,510,305	-				+0.8
1,510,305	-				+0.3
1,510,305	-				+2.0
1,510,305	-				+1.8
1,510,305	-				-1.6
1,510,305	-				+0.6
1,510,305	-				+1.1
1,510,305	-				+1.6
1,510,305	-				+2.3
1,510,305	-				+2.8
1,510,305	-				+0.5
1,510,305	-				+1.8
1,510,305	-				+1.7
1,510,305	-				+5.3
1,510,305	-				+2.4
1,512,253	+				+3.3
1,512,253	+				+2.6
1,512,253	+				+1.2
1,512,253	+				+3.2
1,512,254	-				+3.4
1,512,254	-				+3.3
1,512,254	-				+3.0
1,512,254	-				+3.2
1,512,436	+		LRK54_RS07060	0.37	+3.9
1,512,436	+		LRK54_RS07060	0.37	+2.2
1,512,437	-		LRK54_RS07060	0.37	+3.5
1,512,493	+		LRK54_RS07060	0.46	+3.3
1,512,493	+		LRK54_RS07060	0.46	+2.5
1,512,493	+		LRK54_RS07060	0.46	+3.9
1,512,493	+		LRK54_RS07060	0.46	+3.6
1,512,494	-		LRK54_RS07060	0.46	+3.1
1,512,524	-		LRK54_RS07060	0.51	+3.3
1,512,524	-		LRK54_RS07060	0.51	+2.6
1,512,580	+		LRK54_RS07060	0.60	+3.5
1,512,580	+		LRK54_RS07060	0.60	+2.9
1,512,580	+		LRK54_RS07060	0.60	+2.6
1,512,580	+		LRK54_RS07060	0.60	+3.6
1,512,580	+		LRK54_RS07060	0.60	+2.9
1,512,580	+		LRK54_RS07060	0.60	+2.2
1,512,580	+		LRK54_RS07060	0.60	+2.4
1,512,580	+		LRK54_RS07060	0.60	+3.5
1,512,581	-		LRK54_RS07060	0.60	+3.5
1,512,581	-		LRK54_RS07060	0.60	+4.1
1,512,581	-		LRK54_RS07060	0.60	+4.3
1,512,581	-		LRK54_RS07060	0.60	+3.9
1,512,581	-		LRK54_RS07060	0.60	+2.4
1,512,581	-		LRK54_RS07060	0.60	+3.4
1,512,581	-		LRK54_RS07060	0.60	+2.5
1,512,581	-		LRK54_RS07060	0.60	+3.6
1,512,673	+		LRK54_RS07060	0.75	+3.1
1,512,673	+		LRK54_RS07060	0.75	+2.2
1,512,673	+		LRK54_RS07060	0.75	+2.6
1,512,673	+		LRK54_RS07060	0.75	+3.8
1,512,673	+		LRK54_RS07060	0.75	+3.5
1,512,673	+		LRK54_RS07060	0.75	+2.7
1,512,673	+		LRK54_RS07060	0.75	+3.2
1,512,673	+		LRK54_RS07060	0.75	+3.0
1,512,674	-		LRK54_RS07060	0.75	+2.6
1,512,674	-		LRK54_RS07060	0.75	+2.6
1,512,674	-		LRK54_RS07060	0.75	+3.1
1,512,674	-		LRK54_RS07060	0.75	+1.9
1,512,674	-		LRK54_RS07060	0.75	+2.8
1,512,674	-		LRK54_RS07060	0.75	+1.7
1,512,674	-		LRK54_RS07060	0.75	+3.0
1,512,674	-		LRK54_RS07060	0.75	+3.4
1,512,674	-		LRK54_RS07060	0.75	+3.4
1,512,682	+		LRK54_RS07060	0.76	+3.3
1,512,682	+		LRK54_RS07060	0.76	+2.7
1,512,682	+		LRK54_RS07060	0.76	+3.8
1,512,682	+		LRK54_RS07060	0.76	+3.2
1,512,683	-		LRK54_RS07060	0.76	+2.1
1,512,683	-		LRK54_RS07060	0.76	+3.5
1,512,683	-		LRK54_RS07060	0.76	+3.4
1,512,683	-		LRK54_RS07060	0.76	+2.7
1,512,776	+				+0.5
1,512,776	+				+3.7
1,512,776	+				-1.5
1,512,776	+				+1.0
1,512,776	+				+3.7
1,512,776	+				+1.0
1,512,777	-				+2.4
1,512,777	-				+4.2
1,512,777	-				+2.0
1,512,777	-				+2.9
1,512,777	-				+3.0
1,513,053	+		LRK54_RS07065	0.21	-3.2
1,513,053	+		LRK54_RS07065	0.21	+2.2
1,513,054	-		LRK54_RS07065	0.22	+2.2
1,513,054	-		LRK54_RS07065	0.22	+0.2
1,513,071	+		LRK54_RS07065	0.23	+0.4
1,513,071	+		LRK54_RS07065	0.23	-1.1
1,513,071	+		LRK54_RS07065	0.23	-1.7
1,513,071	+		LRK54_RS07065	0.23	-1.1
1,513,071	+		LRK54_RS07065	0.23	+0.0
1,513,071	+		LRK54_RS07065	0.23	-0.7
1,513,071	+		LRK54_RS07065	0.23	-1.9
1,513,071	+		LRK54_RS07065	0.23	+0.8
1,513,071	+		LRK54_RS07065	0.23	+1.0
1,513,071	+		LRK54_RS07065	0.23	-1.4
1,513,071	+		LRK54_RS07065	0.23	-1.8
1,513,072	-		LRK54_RS07065	0.23	+1.5
1,513,072	-		LRK54_RS07065	0.23	+2.6
1,513,072	-		LRK54_RS07065	0.23	+0.1
1,513,072	-		LRK54_RS07065	0.23	+0.5
1,513,072	-		LRK54_RS07065	0.23	+0.8
1,513,072	-		LRK54_RS07065	0.23	-0.4
1,513,072	-		LRK54_RS07065	0.23	+7.8
1,513,072	-		LRK54_RS07065	0.23	-0.0
1,513,072	-		LRK54_RS07065	0.23	-1.5
1,513,072	-		LRK54_RS07065	0.23	+2.2
1,513,072	-		LRK54_RS07065	0.23	-0.6
1,513,072	-		LRK54_RS07065	0.23	+1.2