Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05855

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,261,716	+		LRK54_RS05850	0.23	+0.8
1,261,716	+		LRK54_RS05850	0.23	-3.1
1,261,716	+		LRK54_RS05850	0.23	+0.5
1,261,716	+		LRK54_RS05850	0.23	-1.7
1,261,716	+		LRK54_RS05850	0.23	-0.4
1,261,716	+		LRK54_RS05850	0.23	+2.1
1,261,716	+		LRK54_RS05850	0.23	+2.1
1,261,716	+		LRK54_RS05850	0.23	-0.6
1,261,717	-		LRK54_RS05850	0.23	+0.2
1,261,717	-		LRK54_RS05850	0.23	+2.1
1,261,717	-		LRK54_RS05850	0.23	+0.8
1,261,717	-		LRK54_RS05850	0.23	-2.4
1,261,717	-		LRK54_RS05850	0.23	-1.0
1,261,717	-		LRK54_RS05850	0.23	-0.0
1,261,776	+		LRK54_RS05850	0.29	+0.5
1,261,776	+		LRK54_RS05850	0.29	-0.3
1,261,776	+		LRK54_RS05850	0.29	-1.9
1,261,776	+		LRK54_RS05850	0.29	+0.8
1,261,776	+		LRK54_RS05850	0.29	+1.1
1,261,776	+		LRK54_RS05850	0.29	+0.6
1,261,776	+		LRK54_RS05850	0.29	+0.2
1,261,776	+		LRK54_RS05850	0.29	+1.9
1,261,776	+		LRK54_RS05850	0.29	-0.4
1,261,776	+		LRK54_RS05850	0.29	+0.1
1,261,776	+		LRK54_RS05850	0.29	+1.7
1,261,776	+		LRK54_RS05850	0.29	-1.3
1,261,776	+		LRK54_RS05850	0.29	-0.3
1,261,776	+		LRK54_RS05850	0.29	+0.3
1,261,776	+		LRK54_RS05850	0.29	+0.6
1,261,776	+		LRK54_RS05850	0.29	-1.3
1,261,776	+		LRK54_RS05850	0.29	+0.2
1,261,777	-		LRK54_RS05850	0.29	+0.3
1,261,777	-		LRK54_RS05850	0.29	-0.3
1,261,777	-		LRK54_RS05850	0.29	+0.2
1,261,777	-		LRK54_RS05850	0.29	-1.9
1,261,777	-		LRK54_RS05850	0.29	-2.1
1,261,777	-		LRK54_RS05850	0.29	+1.3
1,261,777	-		LRK54_RS05850	0.29	-0.9
1,261,777	-		LRK54_RS05850	0.29	-0.4
1,261,777	-		LRK54_RS05850	0.29	+0.4
1,261,777	-		LRK54_RS05850	0.29	-0.9
1,261,777	-		LRK54_RS05850	0.29	-0.9
1,261,777	-		LRK54_RS05850	0.29	-0.0
1,261,777	-		LRK54_RS05850	0.29	-0.9
1,261,777	-		LRK54_RS05850	0.29	-1.8
1,261,777	-		LRK54_RS05850	0.29	+0.6
1,261,777	-		LRK54_RS05850	0.29	-0.1
1,261,777	-		LRK54_RS05850	0.29	-2.6
1,261,777	-		LRK54_RS05850	0.29	+0.8
1,261,777	-		LRK54_RS05850	0.29	+0.6
1,261,777	-		LRK54_RS05850	0.29	-0.7
1,261,777	-		LRK54_RS05850	0.29	+1.3
1,261,777	-		LRK54_RS05850	0.29	+0.7
1,261,777	-		LRK54_RS05850	0.29	-2.6
1,261,777	-		LRK54_RS05850	0.29	+0.2
1,261,824	+		LRK54_RS05850	0.33	+0.6
1,261,825	-		LRK54_RS05850	0.33	-2.9
1,261,825	-		LRK54_RS05850	0.33	-1.2
1,261,836	+		LRK54_RS05850	0.34	-0.9
1,261,836	+		LRK54_RS05850	0.34	-0.8
1,261,836	+		LRK54_RS05850	0.34	+0.9
1,261,836	+		LRK54_RS05850	0.34	+0.6
1,261,836	+		LRK54_RS05850	0.34	+1.6
1,261,836	+		LRK54_RS05850	0.34	-1.4
1,261,837	-		LRK54_RS05850	0.34	+3.4
1,261,837	-		LRK54_RS05850	0.34	+0.8
1,261,837	-		LRK54_RS05850	0.34	+2.1
1,261,886	+		LRK54_RS05850	0.39	+1.6
1,261,886	+		LRK54_RS05850	0.39	-0.1
1,261,886	+		LRK54_RS05850	0.39	-0.9
1,261,886	+		LRK54_RS05850	0.39	+0.0
1,261,886	+		LRK54_RS05850	0.39	+1.8
1,261,886	+		LRK54_RS05850	0.39	-0.8
1,261,886	+		LRK54_RS05850	0.39	-1.8
1,261,886	+		LRK54_RS05850	0.39	-1.8
1,261,886	+		LRK54_RS05850	0.39	+1.1
1,261,886	+		LRK54_RS05850	0.39	-0.8
1,261,886	+		LRK54_RS05850	0.39	-2.7
1,261,886	+		LRK54_RS05850	0.39	+1.1
1,261,886	+		LRK54_RS05850	0.39	-0.6
1,261,886	+		LRK54_RS05850	0.39	+0.1
1,261,886	+		LRK54_RS05850	0.39	+1.1
1,261,887	-		LRK54_RS05850	0.39	-0.0
1,261,887	-		LRK54_RS05850	0.39	+1.6
1,261,887	-		LRK54_RS05850	0.39	-0.7
1,261,887	-		LRK54_RS05850	0.39	+2.6
1,261,887	-		LRK54_RS05850	0.39	+1.6
1,261,887	-		LRK54_RS05850	0.39	-0.8
1,261,887	-		LRK54_RS05850	0.39	+1.1
1,261,887	-		LRK54_RS05850	0.39	-0.2
1,261,887	-		LRK54_RS05850	0.39	+1.1
1,261,887	-		LRK54_RS05850	0.39	+1.6
1,261,887	-		LRK54_RS05850	0.39	+2.3
1,261,953	+		LRK54_RS05850	0.45	+0.2
1,261,953	+		LRK54_RS05850	0.45	-0.8
1,261,953	+		LRK54_RS05850	0.45	-1.0
1,261,953	+		LRK54_RS05850	0.45	+1.8
1,261,954	-		LRK54_RS05850	0.45	+0.5
1,261,954	-		LRK54_RS05850	0.45	-0.8
1,261,986	+		LRK54_RS05850	0.48	-0.6
1,261,986	+		LRK54_RS05850	0.48	-0.8
1,261,986	+		LRK54_RS05850	0.48	-1.6
1,261,986	+		LRK54_RS05850	0.48	-1.1
1,261,986	+		LRK54_RS05850	0.48	-0.0
1,261,986	+		LRK54_RS05850	0.48	-1.0
1,261,986	+		LRK54_RS05850	0.48	-0.4
1,261,986	+		LRK54_RS05850	0.48	+0.6
1,261,986	+		LRK54_RS05850	0.48	+0.1
1,261,986	+		LRK54_RS05850	0.48	+0.1
1,261,986	+		LRK54_RS05850	0.48	+0.9
1,261,986	+		LRK54_RS05850	0.48	+1.1
1,261,986	+		LRK54_RS05850	0.48	+0.1
1,261,987	-		LRK54_RS05850	0.48	-0.3
1,261,987	-		LRK54_RS05850	0.48	+6.0
1,261,987	-		LRK54_RS05850	0.48	-0.8
1,261,987	-		LRK54_RS05850	0.48	+0.8
1,261,987	-		LRK54_RS05850	0.48	+0.5
1,261,987	-		LRK54_RS05850	0.48	+0.8
1,261,987	-		LRK54_RS05850	0.48	+1.0
1,261,987	-		LRK54_RS05850	0.48	+0.6
1,261,987	-		LRK54_RS05850	0.48	+2.6
1,261,987	-		LRK54_RS05850	0.48	-1.1
1,261,987	-		LRK54_RS05850	0.48	+0.1
1,261,987	-		LRK54_RS05850	0.48	+0.8
1,261,987	-		LRK54_RS05850	0.48	+0.2
1,261,989	+		LRK54_RS05850	0.48	-0.3
1,261,989	+		LRK54_RS05850	0.48	-2.2
1,261,989	+		LRK54_RS05850	0.48	+1.6
1,261,989	+		LRK54_RS05850	0.48	+0.8
1,261,989	+		LRK54_RS05850	0.48	+1.4
1,261,989	+		LRK54_RS05850	0.48	+0.1
1,261,989	+		LRK54_RS05850	0.48	-0.8
1,261,989	+		LRK54_RS05850	0.48	-0.6
1,261,989	+		LRK54_RS05850	0.48	-0.1
1,261,989	+		LRK54_RS05850	0.48	-0.8
1,261,989	+		LRK54_RS05850	0.48	-0.1
1,261,989	+		LRK54_RS05850	0.48	-0.5
1,261,989	+		LRK54_RS05850	0.48	-0.5
1,261,989	+		LRK54_RS05850	0.48	-0.0
1,261,989	+		LRK54_RS05850	0.48	-0.6
1,261,990	-		LRK54_RS05850	0.49	+0.1
1,261,990	-		LRK54_RS05850	0.49	+0.9
1,261,990	-		LRK54_RS05850	0.49	-0.4
1,261,990	-		LRK54_RS05850	0.49	+0.6
1,261,990	-		LRK54_RS05850	0.49	-0.8
1,261,990	-		LRK54_RS05850	0.49	+1.1
1,261,990	-		LRK54_RS05850	0.49	+0.2
1,261,990	-		LRK54_RS05850	0.49	+1.2
1,262,097	+		LRK54_RS05850	0.58	-0.3
1,262,098	-		LRK54_RS05850	0.58	+1.6
1,262,109	+		LRK54_RS05850	0.59	+1.3
1,262,109	+		LRK54_RS05850	0.59	-1.1
1,262,110	-		LRK54_RS05850	0.60	-0.2
1,262,110	-		LRK54_RS05850	0.60	+3.1
1,262,110	-		LRK54_RS05850	0.60	-0.3
1,262,136	+		LRK54_RS05850	0.62	+0.3
1,262,136	+		LRK54_RS05850	0.62	-1.8
1,262,136	+		LRK54_RS05850	0.62	-2.4
1,262,136	+		LRK54_RS05850	0.62	-0.0
1,262,136	+		LRK54_RS05850	0.62	+0.1
1,262,136	+		LRK54_RS05850	0.62	+0.3
1,262,136	+		LRK54_RS05850	0.62	+1.7
1,262,136	+		LRK54_RS05850	0.62	+1.0
1,262,136	+		LRK54_RS05850	0.62	+0.4
1,262,136	+		LRK54_RS05850	0.62	-0.8
1,262,136	+		LRK54_RS05850	0.62	+1.3
1,262,136	+		LRK54_RS05850	0.62	-0.5
1,262,137	-		LRK54_RS05850	0.62	-1.8
1,262,137	-		LRK54_RS05850	0.62	-1.2
1,262,137	-		LRK54_RS05850	0.62	+2.5
1,262,137	-		LRK54_RS05850	0.62	+0.6
1,262,137	-		LRK54_RS05850	0.62	+1.6
1,262,137	-		LRK54_RS05850	0.62	+0.4
1,262,137	-		LRK54_RS05850	0.62	+2.1
1,262,137	-		LRK54_RS05850	0.62	+1.1
1,262,137	-		LRK54_RS05850	0.62	+0.3
1,262,137	-		LRK54_RS05850	0.62	-1.1
1,262,137	-		LRK54_RS05850	0.62	+0.3
1,262,137	-		LRK54_RS05850	0.62	+1.6
1,262,619	+				+3.1
1,262,781	+		LRK54_RS05855	0.27	-0.8
1,262,781	+		LRK54_RS05855	0.27	-0.2
1,262,781	+		LRK54_RS05855	0.27	-1.2
1,262,782	-		LRK54_RS05855	0.27	+1.6
1,262,782	-		LRK54_RS05855	0.27	-0.0
1,262,782	-		LRK54_RS05855	0.27	-1.1
1,262,782	-		LRK54_RS05855	0.27	+1.6
1,262,793	+		LRK54_RS05855	0.29	-1.4
1,262,794	-		LRK54_RS05855	0.29	-2.8
1,263,182	+				+0.1
1,263,182	+				-1.8
1,263,182	+				-1.7
1,263,182	+				-1.8
1,263,182	+				-0.0
1,263,182	+				+0.8
1,263,182	+				+0.1
1,263,182	+				+0.6
1,263,182	+				+0.3
1,263,182	+				-0.2
1,263,182	+				+2.7
1,263,182	+				-0.5
1,263,182	+				-0.2
1,263,182	+				-1.5
1,263,182	+				-0.6
1,263,182	+				+0.9
1,263,182	+				-2.8
1,263,182	+				-1.1
1,263,182	+				-1.3
1,263,182	+				+1.6
1,263,182	+				+0.8
1,263,182	+				+0.6
1,263,182	+				-1.0
1,263,182	+				+1.8
1,263,183	-				-0.8
1,263,183	-				-0.2
1,263,183	-				+0.8
1,263,183	-				-1.0
1,263,183	-				-0.9
1,263,183	-				-1.3
1,263,183	-				-0.4
1,263,183	-				-0.6
1,263,183	-				-1.5
1,263,183	-				+0.1
1,263,183	-				-0.4
1,263,183	-				-1.9
1,263,183	-				-0.4
1,263,183	-				-1.5
1,263,183	-				-0.3
1,263,183	-				-0.7
1,263,190	-				-0.4
1,263,190	-				-1.9
1,263,499	+		LRK54_RS05860	0.19	+2.7
1,263,499	+		LRK54_RS05860	0.19	-1.4
1,263,499	+		LRK54_RS05860	0.19	+0.8
1,263,499	+		LRK54_RS05860	0.19	-1.5
1,263,499	+		LRK54_RS05860	0.19	-1.2
1,263,499	+		LRK54_RS05860	0.19	+0.6
1,263,499	+		LRK54_RS05860	0.19	+1.1
1,263,499	+		LRK54_RS05860	0.19	+0.8
1,263,499	+		LRK54_RS05860	0.19	-0.1
1,263,499	+		LRK54_RS05860	0.19	+1.1
1,263,499	+		LRK54_RS05860	0.19	-0.4
1,263,499	+		LRK54_RS05860	0.19	+0.7
1,263,500	-		LRK54_RS05860	0.19	-0.2
1,263,500	-		LRK54_RS05860	0.19	+1.4
1,263,500	-		LRK54_RS05860	0.19	-0.2
1,263,500	-		LRK54_RS05860	0.19	-0.6
1,263,500	-		LRK54_RS05860	0.19	-0.2
1,263,500	-		LRK54_RS05860	0.19	-1.2
1,263,500	-		LRK54_RS05860	0.19	+0.5
1,263,500	-		LRK54_RS05860	0.19	+0.0
1,263,500	-		LRK54_RS05860	0.19	-1.5
1,263,500	-		LRK54_RS05860	0.19	+2.1
1,263,500	-		LRK54_RS05860	0.19	-0.0
1,263,562	+		LRK54_RS05860	0.23	+1.1
1,263,562	+		LRK54_RS05860	0.23	+0.7
1,263,562	+		LRK54_RS05860	0.23	-0.0
1,263,562	+		LRK54_RS05860	0.23	-1.2
1,263,562	+		LRK54_RS05860	0.23	-0.1
1,263,562	+		LRK54_RS05860	0.23	-0.3
1,263,562	+		LRK54_RS05860	0.23	+0.6
1,263,562	+		LRK54_RS05860	0.23	+0.8
1,263,562	+		LRK54_RS05860	0.23	-0.4
1,263,563	-		LRK54_RS05860	0.24	-1.1
1,263,563	-		LRK54_RS05860	0.24	+0.6
1,263,563	-		LRK54_RS05860	0.24	+0.7
1,263,563	-		LRK54_RS05860	0.24	-1.8
1,263,563	-		LRK54_RS05860	0.24	+0.6
1,263,563	-		LRK54_RS05860	0.24	+1.4
1,263,563	-		LRK54_RS05860	0.24	-0.9
1,263,563	-		LRK54_RS05860	0.24	-2.1
1,263,563	-		LRK54_RS05860	0.24	-1.9
1,263,563	-		LRK54_RS05860	0.24	-1.5
1,263,563	-		LRK54_RS05860	0.24	+0.1
1,263,563	-		LRK54_RS05860	0.24	-0.9
1,263,563	-		LRK54_RS05860	0.24	-1.7
1,263,563	-		LRK54_RS05860	0.24	-0.3
1,263,805	+		LRK54_RS05860	0.40	-0.7
1,263,805	+		LRK54_RS05860	0.40	+2.1
1,263,805	+		LRK54_RS05860	0.40	+0.6
1,263,805	+		LRK54_RS05860	0.40	-1.6
1,263,805	+		LRK54_RS05860	0.40	+0.3
1,263,805	+		LRK54_RS05860	0.40	+1.1
1,263,805	+		LRK54_RS05860	0.40	+1.1
1,263,805	+		LRK54_RS05860	0.40	+0.4
1,263,805	+		LRK54_RS05860	0.40	-0.9
1,263,805	+		LRK54_RS05860	0.40	+0.1
1,263,805	+		LRK54_RS05860	0.40	+0.3
1,263,806	-		LRK54_RS05860	0.40	+1.6
1,263,806	-		LRK54_RS05860	0.40	-0.6
1,263,806	-		LRK54_RS05860	0.40	+1.1
1,263,806	-		LRK54_RS05860	0.40	+1.0
1,263,806	-		LRK54_RS05860	0.40	+0.1
1,263,806	-		LRK54_RS05860	0.40	+0.0
1,263,964	+		LRK54_RS05860	0.50	-0.8
1,263,964	+		LRK54_RS05860	0.50	+1.0
1,263,964	+		LRK54_RS05860	0.50	-2.3
1,263,964	+		LRK54_RS05860	0.50	-0.4
1,263,964	+		LRK54_RS05860	0.50	+2.1
1,263,964	+		LRK54_RS05860	0.50	-1.1
1,263,964	+		LRK54_RS05860	0.50	-0.7
1,263,964	+		LRK54_RS05860	0.50	-2.2
1,263,964	+		LRK54_RS05860	0.50	-2.7
1,263,964	+		LRK54_RS05860	0.50	-1.8
1,263,964	+		LRK54_RS05860	0.50	-0.7
1,263,964	+		LRK54_RS05860	0.50	+0.8
1,263,964	+		LRK54_RS05860	0.50	+1.8
1,263,965	-		LRK54_RS05860	0.50	-0.9
1,263,965	-		LRK54_RS05860	0.50	-0.1
1,263,965	-		LRK54_RS05860	0.50	+0.3
1,263,965	-		LRK54_RS05860	0.50	-0.8
1,263,965	-		LRK54_RS05860	0.50	+0.6
1,263,965	-		LRK54_RS05860	0.50	-1.7
1,263,965	-		LRK54_RS05860	0.50	-0.7
1,263,965	-				+3.1
1,263,965	-		LRK54_RS05860	0.50	-0.0
1,263,965	-		LRK54_RS05860	0.50	-0.9
1,263,965	-		LRK54_RS05860	0.50	-0.2
1,263,965	-		LRK54_RS05860	0.50	-0.9
1,263,965	-		LRK54_RS05860	0.50	-0.0
1,263,979	+		LRK54_RS05860	0.51	+0.3
1,263,979	+		LRK54_RS05860	0.51	-0.0
1,263,980	-		LRK54_RS05860	0.51	-1.1
1,263,980	-		LRK54_RS05860	0.51	-1.6
1,263,980	-		LRK54_RS05860	0.51	-0.1
1,263,980	-		LRK54_RS05860	0.51	-0.8
1,263,980	-		LRK54_RS05860	0.51	-1.5
1,263,980	-		LRK54_RS05860	0.51	+1.6
1,263,980	-		LRK54_RS05860	0.51	-0.0
1,263,980	-		LRK54_RS05860	0.51	+0.1
1,263,980	-		LRK54_RS05860	0.51	-1.3
1,263,980	-		LRK54_RS05860	0.51	-1.6
1,263,980	-		LRK54_RS05860	0.51	+0.8