Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05840

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,258,151	+		LRK54_RS05835	0.37	-0.3
1,258,151	+		LRK54_RS05835	0.37	-0.9
1,258,151	+		LRK54_RS05835	0.37	+0.8
1,258,151	+		LRK54_RS05835	0.37	-0.4
1,258,151	+		LRK54_RS05835	0.37	-1.1
1,258,151	+		LRK54_RS05835	0.37	-2.4
1,258,151	+		LRK54_RS05835	0.37	+1.9
1,258,151	+		LRK54_RS05835	0.37	-1.5
1,258,151	+		LRK54_RS05835	0.37	+1.6
1,258,151	+		LRK54_RS05835	0.37	+1.7
1,258,151	+		LRK54_RS05835	0.37	-1.1
1,258,151	+		LRK54_RS05835	0.37	-1.4
1,258,151	+		LRK54_RS05835	0.37	-0.0
1,258,151	+		LRK54_RS05835	0.37	-0.9
1,258,151	+		LRK54_RS05835	0.37	+1.4
1,258,152	-		LRK54_RS05835	0.37	+2.3
1,258,152	-		LRK54_RS05835	0.37	+1.4
1,258,152	-		LRK54_RS05835	0.37	-2.0
1,258,152	-		LRK54_RS05835	0.37	-0.2
1,258,152	-		LRK54_RS05835	0.37	-0.6
1,258,152	-		LRK54_RS05835	0.37	-0.9
1,258,152	-		LRK54_RS05835	0.37	-0.2
1,258,152	-		LRK54_RS05835	0.37	+0.6
1,258,152	-		LRK54_RS05835	0.37	-1.8
1,258,152	-		LRK54_RS05835	0.37	+1.6
1,258,152	-		LRK54_RS05835	0.37	+0.8
1,258,152	-		LRK54_RS05835	0.37	-0.7
1,258,152	-		LRK54_RS05835	0.37	+0.1
1,258,152	-		LRK54_RS05835	0.37	-2.2
1,258,152	-		LRK54_RS05835	0.37	-0.9
1,258,157	+		LRK54_RS05835	0.38	-1.6
1,258,157	+		LRK54_RS05835	0.38	-0.2
1,258,157	+		LRK54_RS05835	0.38	-0.2
1,258,157	+		LRK54_RS05835	0.38	-1.1
1,258,157	+		LRK54_RS05835	0.38	+0.0
1,258,157	+		LRK54_RS05835	0.38	+0.3
1,258,157	+		LRK54_RS05835	0.38	-0.7
1,258,157	+		LRK54_RS05835	0.38	-0.8
1,258,158	-		LRK54_RS05835	0.38	+0.8
1,258,158	-		LRK54_RS05835	0.38	-0.1
1,258,278	-		LRK54_RS05835	0.46	-1.4
1,258,283	+		LRK54_RS05835	0.47	+1.1
1,258,283	+		LRK54_RS05835	0.47	-1.9
1,258,283	+		LRK54_RS05835	0.47	-1.6
1,258,283	+		LRK54_RS05835	0.47	+0.1
1,258,283	+		LRK54_RS05835	0.47	-1.0
1,258,283	+		LRK54_RS05835	0.47	-0.1
1,258,283	+		LRK54_RS05835	0.47	+0.6
1,258,284	-		LRK54_RS05835	0.47	-0.8
1,258,284	-		LRK54_RS05835	0.47	-0.0
1,258,284	-		LRK54_RS05835	0.47	-1.1
1,258,284	-		LRK54_RS05835	0.47	-0.2
1,258,284	-		LRK54_RS05835	0.47	-0.7
1,258,284	-		LRK54_RS05835	0.47	-0.4
1,258,284	-		LRK54_RS05835	0.47	+0.1
1,258,284	-		LRK54_RS05835	0.47	-1.1
1,258,284	-		LRK54_RS05835	0.47	+0.3
1,258,284	-		LRK54_RS05835	0.47	+0.8
1,258,284	-		LRK54_RS05835	0.47	-1.0
1,258,284	-		LRK54_RS05835	0.47	+1.1
1,258,284	-		LRK54_RS05835	0.47	-1.9
1,258,284	-		LRK54_RS05835	0.47	+0.5
1,258,284	-		LRK54_RS05835	0.47	+0.8
1,258,284	-		LRK54_RS05835	0.47	-1.6
1,258,367	+		LRK54_RS05835	0.53	-1.9
1,258,367	+		LRK54_RS05835	0.53	+0.1
1,258,367	+		LRK54_RS05835	0.53	-1.4
1,258,367	+		LRK54_RS05835	0.53	+0.6
1,258,367	+		LRK54_RS05835	0.53	+0.6
1,258,367	+		LRK54_RS05835	0.53	+0.8
1,258,367	+		LRK54_RS05835	0.53	-1.9
1,258,367	+		LRK54_RS05835	0.53	-0.2
1,258,367	+		LRK54_RS05835	0.53	-0.8
1,258,368	-		LRK54_RS05835	0.53	+0.3
1,258,368	-		LRK54_RS05835	0.53	+0.6
1,258,368	-		LRK54_RS05835	0.53	-0.4
1,258,368	-		LRK54_RS05835	0.53	+0.2
1,258,368	-		LRK54_RS05835	0.53	-0.2
1,258,368	-		LRK54_RS05835	0.53	+0.6
1,258,368	-		LRK54_RS05835	0.53	-0.8
1,258,368	-		LRK54_RS05835	0.53	-0.1
1,258,368	-		LRK54_RS05835	0.53	-0.1
1,258,368	-		LRK54_RS05835	0.53	-1.1
1,258,538	+		LRK54_RS05835	0.65	+0.7
1,258,538	+		LRK54_RS05835	0.65	-0.7
1,258,538	+		LRK54_RS05835	0.65	-2.1
1,258,538	+		LRK54_RS05835	0.65	+1.3
1,258,538	+		LRK54_RS05835	0.65	-0.8
1,258,538	+		LRK54_RS05835	0.65	-1.4
1,258,538	+		LRK54_RS05835	0.65	-0.8
1,258,538	+		LRK54_RS05835	0.65	-0.0
1,258,538	+		LRK54_RS05835	0.65	+0.8
1,258,538	+		LRK54_RS05835	0.65	-2.1
1,258,538	+		LRK54_RS05835	0.65	-0.1
1,258,538	+		LRK54_RS05835	0.65	+0.1
1,258,538	+		LRK54_RS05835	0.65	+2.1
1,258,538	+		LRK54_RS05835	0.65	+1.6
1,258,539	-		LRK54_RS05835	0.65	+2.1
1,258,539	-		LRK54_RS05835	0.65	-1.4
1,258,539	-		LRK54_RS05835	0.65	-0.1
1,258,539	-		LRK54_RS05835	0.65	-0.6
1,258,539	-		LRK54_RS05835	0.65	-0.0
1,258,539	-		LRK54_RS05835	0.65	-1.4
1,258,539	-		LRK54_RS05835	0.65	+0.6
1,258,539	-		LRK54_RS05835	0.65	-0.8
1,258,539	-		LRK54_RS05835	0.65	-1.7
1,258,539	-		LRK54_RS05835	0.65	-0.4
1,258,577	+		LRK54_RS05835	0.68	+1.1
1,258,577	+		LRK54_RS05835	0.68	+0.3
1,258,577	+		LRK54_RS05835	0.68	-1.0
1,258,577	+		LRK54_RS05835	0.68	+3.7
1,258,577	+		LRK54_RS05835	0.68	-0.9
1,258,577	+		LRK54_RS05835	0.68	+4.1
1,258,578	-		LRK54_RS05835	0.68	+0.7
1,258,578	-		LRK54_RS05835	0.68	-1.3
1,258,578	-		LRK54_RS05835	0.68	+0.6
1,258,578	-		LRK54_RS05835	0.68	+0.6
1,258,742	+		LRK54_RS05835	0.80	-0.3
1,258,742	+		LRK54_RS05835	0.80	+1.6
1,258,742	+		LRK54_RS05835	0.80	-0.2
1,258,743	-		LRK54_RS05835	0.80	+0.6
1,258,743	-		LRK54_RS05835	0.80	-0.0
1,258,757	+		LRK54_RS05835	0.81	-1.8
1,258,808	+		LRK54_RS05835	0.84	+0.6
1,258,808	+		LRK54_RS05835	0.84	-0.1
1,258,808	+		LRK54_RS05835	0.84	+0.7
1,258,808	+		LRK54_RS05835	0.84	-0.7
1,258,808	+		LRK54_RS05835	0.84	+0.2
1,258,808	+		LRK54_RS05835	0.84	+0.7
1,258,808	+		LRK54_RS05835	0.84	+2.0
1,258,808	+		LRK54_RS05835	0.84	-0.7
1,258,808	+		LRK54_RS05835	0.84	-1.3
1,258,809	-		LRK54_RS05835	0.84	-2.6
1,258,809	-		LRK54_RS05835	0.84	-1.3
1,258,809	-		LRK54_RS05835	0.84	-2.5
1,258,809	-		LRK54_RS05835	0.84	-0.9
1,258,809	-		LRK54_RS05835	0.84	-0.3
1,258,809	-		LRK54_RS05835	0.84	-1.0
1,258,844	+		LRK54_RS05835	0.87	+1.1
1,258,844	+		LRK54_RS05835	0.87	-2.5
1,258,844	+		LRK54_RS05835	0.87	+1.1
1,258,844	+		LRK54_RS05835	0.87	+0.1
1,258,844	+		LRK54_RS05835	0.87	-0.4
1,258,844	+		LRK54_RS05835	0.87	-1.1
1,258,844	+		LRK54_RS05835	0.87	+0.6
1,258,844	+		LRK54_RS05835	0.87	-2.4
1,258,844	+		LRK54_RS05835	0.87	-1.3
1,258,844	+		LRK54_RS05835	0.87	+0.1
1,258,844	+		LRK54_RS05835	0.87	-0.9
1,258,844	+		LRK54_RS05835	0.87	+0.3
1,258,844	+		LRK54_RS05835	0.87	-0.6
1,258,844	+		LRK54_RS05835	0.87	-0.1
1,258,844	+		LRK54_RS05835	0.87	+0.1
1,258,844	+		LRK54_RS05835	0.87	+1.1
1,258,844	+		LRK54_RS05835	0.87	-1.3
1,258,844	+		LRK54_RS05835	0.87	+0.3
1,258,844	+		LRK54_RS05835	0.87	-0.2
1,258,844	+		LRK54_RS05835	0.87	-0.4
1,258,844	+		LRK54_RS05835	0.87	-0.8
1,258,844	+		LRK54_RS05835	0.87	-0.1
1,258,844	+		LRK54_RS05835	0.87	+0.1
1,258,844	+		LRK54_RS05835	0.87	-0.4
1,258,845	-		LRK54_RS05835	0.87	-0.5
1,258,845	-		LRK54_RS05835	0.87	-0.8
1,258,845	-		LRK54_RS05835	0.87	-1.7
1,258,845	-		LRK54_RS05835	0.87	-0.8
1,258,845	-		LRK54_RS05835	0.87	-0.3
1,258,845	-		LRK54_RS05835	0.87	+0.7
1,258,845	-		LRK54_RS05835	0.87	+0.1
1,258,845	-		LRK54_RS05835	0.87	-0.5
1,258,845	-		LRK54_RS05835	0.87	+0.6
1,258,845	-		LRK54_RS05835	0.87	-1.1
1,258,845	-		LRK54_RS05835	0.87	+0.6
1,258,845	-		LRK54_RS05835	0.87	+0.3
1,258,845	-		LRK54_RS05835	0.87	-2.3
1,258,946	+				-0.7
1,258,946	+				+0.8
1,258,947	-				-1.2
1,258,955	+				-0.4
1,258,955	+				-2.3
1,258,955	+				-1.1
1,258,955	+				-0.8
1,258,956	-				+1.1
1,258,956	-				+0.8
1,258,956	-				-0.7
1,258,956	-				-0.9
1,258,956	-				-1.1
1,258,956	-				-0.6
1,258,956	-				+0.8
1,258,956	-				+0.1
1,258,976	+				-0.5
1,258,976	+				+0.8
1,258,977	-				+2.3
1,260,177	-				-1.7
1,260,193	+				+0.0
1,260,193	+				-0.6
1,260,193	+				-0.4
1,260,193	+				-1.4
1,260,194	-				-1.3
1,260,194	-				-0.9
1,260,194	-				-2.6
1,260,194	-				-2.0
1,260,194	-				-0.0
1,260,196	+				-1.1
1,260,196	+				-1.7
1,260,196	+				-0.0
1,260,196	+				-1.8
1,260,196	+				-0.0
1,260,196	+				+0.3
1,260,196	+				-1.4
1,260,196	+				-2.8
1,260,196	+				+0.1
1,260,196	+				+1.3
1,260,196	+				-0.2
1,260,196	+				-1.3
1,260,196	+				-1.9
1,260,196	+				-2.4
1,260,197	-				+0.4
1,260,197	-				-1.3
1,260,197	-				-1.4
1,260,197	-				+0.6
1,260,197	-				-0.6
1,260,197	-				+0.8
1,260,197	-				+0.6
1,260,197	-				-1.1
1,260,197	-				-0.0
1,260,197	-				+0.2
1,260,197	-				+0.6
1,260,197	-				-2.4
1,260,197	-				+0.6
1,260,412	+		LRK54_RS05845	0.20	+0.4
1,260,412	+		LRK54_RS05845	0.20	+2.1
1,260,412	+		LRK54_RS05845	0.20	-0.9
1,260,413	-		LRK54_RS05845	0.20	-1.0
1,260,413	-		LRK54_RS05845	0.20	-1.3
1,260,413	-		LRK54_RS05845	0.20	-0.8
1,260,413	-		LRK54_RS05845	0.20	-1.1
1,260,413	-		LRK54_RS05845	0.20	-1.8
1,260,413	-		LRK54_RS05845	0.20	+0.6
1,260,413	-		LRK54_RS05845	0.20	-0.2
1,260,413	-		LRK54_RS05845	0.20	-0.8
1,260,413	-		LRK54_RS05845	0.20	+1.6
1,260,631	+		LRK54_RS05845	0.37	-1.6
1,260,631	+		LRK54_RS05845	0.37	+0.3
1,260,631	+		LRK54_RS05845	0.37	-1.0
1,260,631	+		LRK54_RS05845	0.37	-1.7
1,260,631	+		LRK54_RS05845	0.37	-0.0
1,260,631	+		LRK54_RS05845	0.37	-0.3
1,260,631	+		LRK54_RS05845	0.37	-1.9
1,260,631	+		LRK54_RS05845	0.37	+1.6
1,260,631	+		LRK54_RS05845	0.37	-0.7
1,260,631	+		LRK54_RS05845	0.37	+0.6
1,260,631	+		LRK54_RS05845	0.37	-1.0
1,260,632	-		LRK54_RS05845	0.37	+3.7
1,260,632	-		LRK54_RS05845	0.37	+2.1
1,260,632	-		LRK54_RS05845	0.37	+0.3
1,260,632	-		LRK54_RS05845	0.37	-0.6
1,260,632	-		LRK54_RS05845	0.37	+2.4
1,260,632	-		LRK54_RS05845	0.37	+2.1
1,260,632	-		LRK54_RS05845	0.37	+0.6
1,260,632	-		LRK54_RS05845	0.37	-1.0
1,260,632	-		LRK54_RS05845	0.37	+1.1
1,260,637	+		LRK54_RS05845	0.37	-2.0
1,260,637	+		LRK54_RS05845	0.37	-1.8
1,260,637	+		LRK54_RS05845	0.37	+0.6
1,260,637	+		LRK54_RS05845	0.37	-0.8
1,260,637	+		LRK54_RS05845	0.37	+0.8
1,260,637	+		LRK54_RS05845	0.37	-0.8
1,260,637	+		LRK54_RS05845	0.37	-1.9
1,260,637	+		LRK54_RS05845	0.37	+0.6
1,260,637	+		LRK54_RS05845	0.37	+0.1
1,260,637	+		LRK54_RS05845	0.37	-2.0
1,260,637	+		LRK54_RS05845	0.37	-1.7
1,260,638	-		LRK54_RS05845	0.37	+1.6
1,260,638	-		LRK54_RS05845	0.37	+0.6
1,260,638	-		LRK54_RS05845	0.37	+2.1
1,260,638	-		LRK54_RS05845	0.37	-0.8
1,260,638	-		LRK54_RS05845	0.37	-0.3
1,260,638	-		LRK54_RS05845	0.37	+0.3
1,260,638	-		LRK54_RS05845	0.37	-2.7
1,260,646	+		LRK54_RS05845	0.38	+0.1
1,260,646	+		LRK54_RS05845	0.38	-1.9
1,260,646	+		LRK54_RS05845	0.38	+0.1
1,260,646	+		LRK54_RS05845	0.38	+1.6
1,260,646	+		LRK54_RS05845	0.38	-1.4
1,260,646	+		LRK54_RS05845	0.38	-1.4
1,260,646	+		LRK54_RS05845	0.38	+2.1
1,260,646	+		LRK54_RS05845	0.38	-0.2
1,260,646	+		LRK54_RS05845	0.38	-1.0
1,260,646	+		LRK54_RS05845	0.38	-1.2
1,260,646	+		LRK54_RS05845	0.38	-0.9
1,260,646	+		LRK54_RS05845	0.38	-3.0
1,260,646	+		LRK54_RS05845	0.38	-1.0
1,260,646	+		LRK54_RS05845	0.38	+2.1
1,260,646	+		LRK54_RS05845	0.38	+0.1
1,260,646	+		LRK54_RS05845	0.38	-0.7
1,260,646	+		LRK54_RS05845	0.38	-1.1
1,260,646	+		LRK54_RS05845	0.38	-2.3
1,260,646	+		LRK54_RS05845	0.38	-0.0
1,260,646	+		LRK54_RS05845	0.38	-0.4
1,260,647	-		LRK54_RS05845	0.38	-1.3
1,260,647	-		LRK54_RS05845	0.38	+0.6
1,260,647	-		LRK54_RS05845	0.38	-1.4
1,260,647	-		LRK54_RS05845	0.38	-1.5
1,260,647	-		LRK54_RS05845	0.38	+1.6
1,260,647	-		LRK54_RS05845	0.38	-1.0
1,260,647	-		LRK54_RS05845	0.38	-2.7
1,260,647	-		LRK54_RS05845	0.38	-0.8
1,260,647	-		LRK54_RS05845	0.38	+2.1
1,260,647	-		LRK54_RS05845	0.38	+2.1
1,260,647	-		LRK54_RS05845	0.38	+2.1
1,260,647	-		LRK54_RS05845	0.38	-1.3
1,260,647	-		LRK54_RS05845	0.38	-0.9
1,260,859	+		LRK54_RS05845	0.54	+1.6
1,260,859	+		LRK54_RS05845	0.54	-1.0
1,260,860	-		LRK54_RS05845	0.54	+1.7
1,260,860	-		LRK54_RS05845	0.54	-2.0
1,260,882	+		LRK54_RS05845	0.56	-3.5
1,260,883	-		LRK54_RS05845	0.56	-0.6
1,261,015	+		LRK54_RS05845	0.66	-1.7
1,261,015	+		LRK54_RS05845	0.66	-0.4
1,261,016	-		LRK54_RS05845	0.66	-1.3
1,261,016	-		LRK54_RS05845	0.66	+1.1
1,261,016	-		LRK54_RS05845	0.66	+2.1
1,261,016	-		LRK54_RS05845	0.66	+0.1
1,261,016	-		LRK54_RS05845	0.66	-0.3
1,261,016	-		LRK54_RS05845	0.66	-0.7
1,261,016	-		LRK54_RS05845	0.66	-0.4
1,261,016	-		LRK54_RS05845	0.66	-1.4
1,261,016	-		LRK54_RS05845	0.66	-4.2
1,261,052	-		LRK54_RS05845	0.69	+0.8