Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04905 and LRK54_RS04910 are separated by 2 nucleotides LRK54_RS04910 and LRK54_RS04915 overlap by 4 nucleotides LRK54_RS04915 and LRK54_RS04920 are separated by 139 nucleotides
LRK54_RS04905: LRK54_RS04905 - potassium transporter Kup, at 1,039,196 to 1,041,097
_RS04905
LRK54_RS04910: LRK54_RS04910 - Holliday junction branch migration protein RuvA, at 1,041,100 to 1,041,696
_RS04910
LRK54_RS04915: LRK54_RS04915 - crossover junction endodeoxyribonuclease RuvC, at 1,041,693 to 1,042,211
_RS04915
LRK54_RS04920: LRK54_RS04920 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,042,351 to 1,043,079
_RS04920
Position (kb)
1041
1042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1041.591 kb on - strand, within LRK54_RS04910 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1042.318 kb on + strand at 1042.318 kb on + strand at 1042.318 kb on + strand at 1042.319 kb on - strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 1,041,591 - LRK54_RS04910 0.82 +2.2 1,041,905 - LRK54_RS04915 0.41 +1.6 1,041,905 - LRK54_RS04915 0.41 +0.8 1,041,905 - LRK54_RS04915 0.41 +0.8 1,041,905 - LRK54_RS04915 0.41 +1.6 1,042,318 + -0.2 1,042,318 + -1.2 1,042,318 + -1.6 1,042,319 - +1.6 1,042,393 + +0.8 1,042,393 + -0.6 1,042,393 + -1.6 1,042,393 + -0.0 1,042,393 + -1.2 1,042,393 + +1.2 1,042,393 + -1.6 1,042,393 + -1.0 1,042,393 + -1.9 1,042,393 + -0.0 1,042,393 + -0.5 1,042,393 + +0.6 1,042,393 + +0.8 1,042,393 + -0.2 1,042,393 + -0.7 1,042,394 - -2.2 1,042,394 - -0.6 1,042,394 - -0.9 1,042,394 - -0.2 1,042,394 - +0.6 1,042,394 - -0.3 1,042,394 - -0.7 1,042,394 - -0.8 1,042,394 - -0.2 1,042,394 - -3.4 1,042,394 - -0.0
Or see this region's nucleotide sequence