Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04910

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04905 and LRK54_RS04910 are separated by 2 nucleotidesLRK54_RS04910 and LRK54_RS04915 overlap by 4 nucleotidesLRK54_RS04915 and LRK54_RS04920 are separated by 139 nucleotides LRK54_RS04905: LRK54_RS04905 - potassium transporter Kup, at 1,039,196 to 1,041,097 _RS04905 LRK54_RS04910: LRK54_RS04910 - Holliday junction branch migration protein RuvA, at 1,041,100 to 1,041,696 _RS04910 LRK54_RS04915: LRK54_RS04915 - crossover junction endodeoxyribonuclease RuvC, at 1,041,693 to 1,042,211 _RS04915 LRK54_RS04920: LRK54_RS04920 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,042,351 to 1,043,079 _RS04920 Position (kb) 1041 1042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1041.591 kb on - strand, within LRK54_RS04910at 1041.905 kb on - strand, within LRK54_RS04915at 1041.905 kb on - strand, within LRK54_RS04915at 1041.905 kb on - strand, within LRK54_RS04915at 1041.905 kb on - strand, within LRK54_RS04915at 1042.318 kb on + strandat 1042.318 kb on + strandat 1042.318 kb on + strandat 1042.319 kb on - strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.393 kb on + strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strandat 1042.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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1,041,591 - LRK54_RS04910 0.82 +2.2
1,041,905 - LRK54_RS04915 0.41 +1.6
1,041,905 - LRK54_RS04915 0.41 +0.8
1,041,905 - LRK54_RS04915 0.41 +0.8
1,041,905 - LRK54_RS04915 0.41 +1.6
1,042,318 + -0.2
1,042,318 + -1.2
1,042,318 + -1.6
1,042,319 - +1.6
1,042,393 + +0.8
1,042,393 + -0.6
1,042,393 + -1.6
1,042,393 + -0.0
1,042,393 + -1.2
1,042,393 + +1.2
1,042,393 + -1.6
1,042,393 + -1.0
1,042,393 + -1.9
1,042,393 + -0.0
1,042,393 + -0.5
1,042,393 + +0.6
1,042,393 + +0.8
1,042,393 + -0.2
1,042,393 + -0.7
1,042,394 - -2.2
1,042,394 - -0.6
1,042,394 - -0.9
1,042,394 - -0.2
1,042,394 - +0.6
1,042,394 - -0.3
1,042,394 - -0.7
1,042,394 - -0.8
1,042,394 - -0.2
1,042,394 - -3.4
1,042,394 - -0.0

Or see this region's nucleotide sequence