Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04740

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
1,005,629	+				+0.6
1,005,629	+				-0.8
1,005,629	+				+1.2
1,005,629	+				-1.6
1,005,629	+				+1.6
1,005,629	+				+0.4
1,005,629	+				-0.4
1,005,629	+				+1.2
1,005,629	+				-1.0
1,005,629	+				+0.0
1,005,629	+				-1.0
1,005,629	+				-0.6
1,005,629	+				+0.0
1,005,629	+				-1.4
1,005,629	+				-0.8
1,005,629	+				+0.2
1,005,629	+				-1.0
1,005,630	-				-2.4
1,005,630	-				+1.6
1,005,630	-				-0.1
1,005,630	-				-0.9
1,005,630	-				-0.6
1,005,630	-				-0.9
1,005,630	-				-0.3
1,005,630	-				-0.2
1,005,630	-				-1.3
1,005,630	-				-3.7
1,005,630	-				-2.0
1,005,630	-				-1.2
1,005,630	-				+1.1
1,005,890	+		LRK54_RS04735	0.35	+0.6
1,005,890	+		LRK54_RS04735	0.35	-1.2
1,005,890	+		LRK54_RS04735	0.35	-1.0
1,005,890	+		LRK54_RS04735	0.35	-0.1
1,005,890	+		LRK54_RS04735	0.35	+0.0
1,005,890	+		LRK54_RS04735	0.35	+0.4
1,005,890	+		LRK54_RS04735	0.35	-0.7
1,005,890	+		LRK54_RS04735	0.35	+0.2
1,005,890	+		LRK54_RS04735	0.35	-0.4
1,005,890	+		LRK54_RS04735	0.35	-0.9
1,005,890	+		LRK54_RS04735	0.35	-0.1
1,005,890	+		LRK54_RS04735	0.35	+0.4
1,005,890	+		LRK54_RS04735	0.35	+0.7
1,005,890	+		LRK54_RS04735	0.35	-0.3
1,005,890	+		LRK54_RS04735	0.35	-1.1
1,005,890	+		LRK54_RS04735	0.35	-0.1
1,005,890	+		LRK54_RS04735	0.35	-1.1
1,005,891	-		LRK54_RS04735	0.35	-0.3
1,005,891	-		LRK54_RS04735	0.35	+1.2
1,005,891	-		LRK54_RS04735	0.35	+0.9
1,005,891	-		LRK54_RS04735	0.35	-0.5
1,005,891	-		LRK54_RS04735	0.35	+0.9
1,005,891	-		LRK54_RS04735	0.35	-1.4
1,005,891	-		LRK54_RS04735	0.35	-1.8
1,005,891	-		LRK54_RS04735	0.35	+0.0
1,005,891	-		LRK54_RS04735	0.35	-0.1
1,005,891	-		LRK54_RS04735	0.35	+1.2
1,005,891	-		LRK54_RS04735	0.35	-1.2
1,005,891	-		LRK54_RS04735	0.35	-0.6
1,005,891	-		LRK54_RS04735	0.35	-2.5
1,006,037	+		LRK54_RS04735	0.51	+0.6
1,006,037	+		LRK54_RS04735	0.51	+1.6
1,006,037	+		LRK54_RS04735	0.51	+1.0
1,006,037	+		LRK54_RS04735	0.51	-0.8
1,006,037	+		LRK54_RS04735	0.51	-2.8
1,006,037	+		LRK54_RS04735	0.51	-1.0
1,006,037	+		LRK54_RS04735	0.51	-0.7
1,006,037	+		LRK54_RS04735	0.51	-1.2
1,006,037	+		LRK54_RS04735	0.51	-0.4
1,006,037	+		LRK54_RS04735	0.51	-0.1
1,006,037	+		LRK54_RS04735	0.51	+0.4
1,006,037	+		LRK54_RS04735	0.51	-0.6
1,006,037	+		LRK54_RS04735	0.51	+0.9
1,006,037	+		LRK54_RS04735	0.51	-0.2
1,006,037	+		LRK54_RS04735	0.51	+1.6
1,006,037	+		LRK54_RS04735	0.51	-0.1
1,006,037	+		LRK54_RS04735	0.51	-0.2
1,006,037	+		LRK54_RS04735	0.51	-0.3
1,006,037	+		LRK54_RS04735	0.51	-0.8
1,006,037	+		LRK54_RS04735	0.51	+1.4
1,006,037	+		LRK54_RS04735	0.51	-0.4
1,006,037	+		LRK54_RS04735	0.51	+1.9
1,006,037	+		LRK54_RS04735	0.51	-1.5
1,006,037	+		LRK54_RS04735	0.51	-0.2
1,006,037	+		LRK54_RS04735	0.51	+2.2
1,006,037	+		LRK54_RS04735	0.51	-0.6
1,006,037	+		LRK54_RS04735	0.51	+0.0
1,006,037	+		LRK54_RS04735	0.51	-1.2
1,006,037	+		LRK54_RS04735	0.51	+0.5
1,006,037	+		LRK54_RS04735	0.51	+0.4
1,006,037	+		LRK54_RS04735	0.51	-1.1
1,006,037	+		LRK54_RS04735	0.51	-1.9
1,006,037	+		LRK54_RS04735	0.51	+0.5
1,006,037	+		LRK54_RS04735	0.51	-1.1
1,006,037	+		LRK54_RS04735	0.51	+0.8
1,006,037	+		LRK54_RS04735	0.51	+3.2
1,006,037	+		LRK54_RS04735	0.51	-1.1
1,006,038	-		LRK54_RS04735	0.51	-1.4
1,006,038	-		LRK54_RS04735	0.51	+0.3
1,006,038	-		LRK54_RS04735	0.51	-1.1
1,006,038	-		LRK54_RS04735	0.51	+2.2
1,006,038	-		LRK54_RS04735	0.51	+1.6
1,006,038	-		LRK54_RS04735	0.51	+1.4
1,006,038	-		LRK54_RS04735	0.51	-1.0
1,006,038	-		LRK54_RS04735	0.51	-1.7
1,006,038	-		LRK54_RS04735	0.51	+0.2
1,006,038	-		LRK54_RS04735	0.51	+0.6
1,006,038	-		LRK54_RS04735	0.51	-1.2
1,006,038	-		LRK54_RS04735	0.51	-0.5
1,006,038	-		LRK54_RS04735	0.51	-2.2
1,006,038	-		LRK54_RS04735	0.51	-0.6
1,006,038	-		LRK54_RS04735	0.51	-0.7
1,006,038	-		LRK54_RS04735	0.51	+1.6
1,006,038	-		LRK54_RS04735	0.51	+1.2
1,006,038	-		LRK54_RS04735	0.51	+0.4
1,006,038	-		LRK54_RS04735	0.51	-0.8
1,006,038	-		LRK54_RS04735	0.51	-0.1
1,006,038	-		LRK54_RS04735	0.51	+0.4
1,006,038	-		LRK54_RS04735	0.51	-0.3
1,006,038	-		LRK54_RS04735	0.51	-1.7
1,006,217	+		LRK54_RS04735	0.71	-2.2
1,006,217	+		LRK54_RS04735	0.71	-0.6
1,006,217	+		LRK54_RS04735	0.71	-0.6
1,006,217	+		LRK54_RS04735	0.71	-0.7
1,006,217	+		LRK54_RS04735	0.71	+0.0
1,006,217	+		LRK54_RS04735	0.71	+0.0
1,006,217	+		LRK54_RS04735	0.71	+0.6
1,006,218	-		LRK54_RS04735	0.71	-1.4
1,006,218	-		LRK54_RS04735	0.71	-1.8
1,006,218	-		LRK54_RS04735	0.71	+0.9
1,006,218	-		LRK54_RS04735	0.71	-0.3
1,006,218	-		LRK54_RS04735	0.71	+0.0
1,006,218	-		LRK54_RS04735	0.71	+1.6
1,006,220	+		LRK54_RS04735	0.71	-1.2
1,006,220	+		LRK54_RS04735	0.71	-2.2
1,006,220	+		LRK54_RS04735	0.71	+0.9
1,006,221	-		LRK54_RS04735	0.71	-0.9
1,006,221	-		LRK54_RS04735	0.71	+1.6
1,006,221	-		LRK54_RS04735	0.71	+1.6
1,006,221	-		LRK54_RS04735	0.71	-1.0
1,006,283	+		LRK54_RS04735	0.78	-0.1
1,006,283	+		LRK54_RS04735	0.78	+2.2
1,006,283	+		LRK54_RS04735	0.78	-1.4
1,006,284	-		LRK54_RS04735	0.78	+0.9
1,006,284	-		LRK54_RS04735	0.78	-1.0
1,006,516	+				-1.6
1,006,516	+				-1.5
1,006,516	+				-0.5
1,006,517	-				-0.9
1,006,517	-				-0.8
1,006,517	-				-0.3
1,006,517	-				+0.7
1,006,517	-				-1.1
1,006,517	-				+0.2
1,006,558	-				+0.0
1,006,603	+		LRK54_RS04740	0.13	-0.9
1,006,603	+		LRK54_RS04740	0.13	+2.2
1,006,603	+		LRK54_RS04740	0.13	-1.2
1,006,603	+		LRK54_RS04740	0.13	+0.4
1,006,604	-		LRK54_RS04740	0.13	+0.8
1,006,604	-		LRK54_RS04740	0.13	-0.4
1,006,604	-		LRK54_RS04740	0.13	+1.6
1,006,604	-		LRK54_RS04740	0.13	+1.2
1,006,604	-		LRK54_RS04740	0.13	-1.8
1,006,714	+		LRK54_RS04740	0.35	+0.1
1,006,714	+		LRK54_RS04740	0.35	+1.6
1,006,714	+		LRK54_RS04740	0.35	-1.2
1,006,714	+		LRK54_RS04740	0.35	-2.8
1,006,715	-		LRK54_RS04740	0.35	+1.6
1,006,715	-		LRK54_RS04740	0.35	+0.0
1,006,715	-		LRK54_RS04740	0.35	-0.6
1,006,747	+		LRK54_RS04740	0.42	-2.8
1,006,747	+		LRK54_RS04740	0.42	-0.6
1,006,747	+		LRK54_RS04740	0.42	-2.6
1,006,747	+		LRK54_RS04740	0.42	+0.8
1,006,747	+		LRK54_RS04740	0.42	-2.9
1,006,748	-		LRK54_RS04740	0.42	+1.6
1,006,748	-		LRK54_RS04740	0.42	-1.3
1,006,748	-		LRK54_RS04740	0.42	-1.0
1,006,748	-		LRK54_RS04740	0.42	+1.4
1,006,748	-		LRK54_RS04740	0.42	-1.9
1,006,748	-		LRK54_RS04740	0.42	+2.2
1,006,748	-		LRK54_RS04740	0.42	-0.3
1,006,748	-		LRK54_RS04740	0.42	-2.1
1,007,148	+				-1.5
1,007,148	+				+0.2
1,007,148	+				-1.1
1,007,148	+				-1.8
1,007,148	+				+1.7
1,007,148	+				-0.4
1,007,148	+				-1.1
1,007,148	+				-0.2
1,007,148	+				-0.7
1,007,148	+				-0.4
1,007,148	+				+0.6
1,007,148	+				-0.3
1,007,149	-				-1.7
1,007,149	-				+0.6
1,007,149	-				+0.8
1,007,149	-				-1.0
1,007,149	-				+0.2
1,007,149	-				+0.9
1,007,149	-				-0.9
1,007,149	-				-1.2
1,007,149	-				-0.7
1,007,149	-				-2.5
1,007,149	-				+0.2
1,007,149	-				+1.6
1,007,149	-				-0.2
1,007,288	+		LRK54_RS04745	0.26	-2.3
1,007,288	+		LRK54_RS04745	0.26	-0.7
1,007,288	+		LRK54_RS04745	0.26	-1.0
1,007,289	-		LRK54_RS04745	0.26	-0.2
1,007,353	+		LRK54_RS04745	0.35	+0.0
1,007,353	+		LRK54_RS04745	0.35	-1.5
1,007,354	-		LRK54_RS04745	0.35	-1.8
1,007,354	-		LRK54_RS04745	0.35	-1.2
1,007,562	+		LRK54_RS04745	0.62	-0.9
1,007,562	+		LRK54_RS04745	0.62	-0.4
1,007,628	+		LRK54_RS04745	0.71	-1.4
1,007,628	+		LRK54_RS04745	0.71	-1.1
1,007,628	+		LRK54_RS04745	0.71	+2.2
1,007,628	+		LRK54_RS04745	0.71	+0.2
1,007,628	+		LRK54_RS04745	0.71	-0.8
1,007,628	+		LRK54_RS04745	0.71	-1.4
1,007,628	+		LRK54_RS04745	0.71	+0.8
1,007,628	+		LRK54_RS04745	0.71	+0.8
1,007,629	-		LRK54_RS04745	0.71	-1.3
1,007,629	-		LRK54_RS04745	0.71	-0.3
1,007,629	-		LRK54_RS04745	0.71	-0.8
1,007,629	-		LRK54_RS04745	0.71	-0.9
1,007,629	-		LRK54_RS04745	0.71	+0.0
1,007,629	-		LRK54_RS04745	0.71	-0.6
1,007,629	-		LRK54_RS04745	0.71	+0.2
1,007,629	-		LRK54_RS04745	0.71	+0.0
1,007,629	-		LRK54_RS04745	0.71	-2.4
1,007,676	+		LRK54_RS04745	0.77	+1.2
1,007,676	+		LRK54_RS04745	0.77	-1.2
1,007,676	+		LRK54_RS04745	0.77	-2.5
1,007,676	+		LRK54_RS04745	0.77	-1.4
1,007,676	+		LRK54_RS04745	0.77	+0.8
1,007,676	+		LRK54_RS04745	0.77	-0.6
1,007,676	+		LRK54_RS04745	0.77	-1.2
1,007,676	+		LRK54_RS04745	0.77	+0.2
1,007,676	+		LRK54_RS04745	0.77	+0.2
1,007,676	+		LRK54_RS04745	0.77	-2.1
1,007,676	+		LRK54_RS04745	0.77	-0.4
1,007,676	+		LRK54_RS04745	0.77	+1.2
1,007,676	+		LRK54_RS04745	0.77	+1.6
1,007,676	+		LRK54_RS04745	0.77	+2.0
1,007,676	+		LRK54_RS04745	0.77	-0.6
1,007,676	+		LRK54_RS04745	0.77	+1.2
1,007,676	+		LRK54_RS04745	0.77	+0.2
1,007,676	+		LRK54_RS04745	0.77	-1.3
1,007,676	+		LRK54_RS04745	0.77	-1.6
1,007,676	+		LRK54_RS04745	0.77	-1.3
1,007,677	-		LRK54_RS04745	0.77	+0.6
1,007,677	-		LRK54_RS04745	0.77	-0.6
1,007,677	-		LRK54_RS04745	0.77	-0.9
1,007,677	-		LRK54_RS04745	0.77	-0.3
1,007,677	-		LRK54_RS04745	0.77	-1.3
1,007,677	-		LRK54_RS04745	0.77	+0.5
1,007,677	-		LRK54_RS04745	0.77	-0.7
1,007,712	+		LRK54_RS04745	0.82	-0.9
1,007,712	+		LRK54_RS04745	0.82	-2.5
1,007,712	+		LRK54_RS04745	0.82	-3.1
1,007,712	+		LRK54_RS04745	0.82	+0.8
1,007,712	+		LRK54_RS04745	0.82	+0.0
1,007,712	+		LRK54_RS04745	0.82	+2.2
1,007,712	+		LRK54_RS04745	0.82	-0.8
1,007,712	+		LRK54_RS04745	0.82	+2.2
1,007,712	+		LRK54_RS04745	0.82	-1.9
1,007,712	+		LRK54_RS04745	0.82	-0.7
1,007,712	+		LRK54_RS04745	0.82	-1.4
1,007,712	+		LRK54_RS04745	0.82	-1.7
1,007,712	+		LRK54_RS04745	0.82	-1.4
1,007,712	+		LRK54_RS04745	0.82	+0.8
1,007,712	+		LRK54_RS04745	0.82	+1.0
1,007,712	+		LRK54_RS04745	0.82	-1.5
1,007,712	+		LRK54_RS04745	0.82	+0.8
1,007,712	+		LRK54_RS04745	0.82	+0.4
1,007,712	+		LRK54_RS04745	0.82	+0.0
1,007,712	+		LRK54_RS04745	0.82	+0.6
1,007,712	+		LRK54_RS04745	0.82	+1.2
1,007,712	+		LRK54_RS04745	0.82	+0.8
1,007,712	+		LRK54_RS04745	0.82	-1.8
1,007,712	+		LRK54_RS04745	0.82	+0.0
1,007,712	+		LRK54_RS04745	0.82	-1.7
1,007,712	+		LRK54_RS04745	0.82	+0.6
1,007,712	+		LRK54_RS04745	0.82	+1.6
1,007,713	-		LRK54_RS04745	0.82	-1.2
1,007,713	-		LRK54_RS04745	0.82	-1.5
1,007,713	-		LRK54_RS04745	0.82	+2.2
1,007,713	-		LRK54_RS04745	0.82	-1.3
1,007,713	-		LRK54_RS04745	0.82	-1.3
1,007,713	-		LRK54_RS04745	0.82	+1.2
1,007,713	-		LRK54_RS04745	0.82	-0.2
1,007,713	-		LRK54_RS04745	0.82	-0.3
1,007,713	-		LRK54_RS04745	0.82	-1.1
1,007,713	-		LRK54_RS04745	0.82	-1.6
1,007,713	-		LRK54_RS04745	0.82	-1.2
1,007,713	-		LRK54_RS04745	0.82	+0.1
1,007,713	-		LRK54_RS04745	0.82	+1.1
1,007,713	-		LRK54_RS04745	0.82	-1.8
1,007,713	-		LRK54_RS04745	0.82	+0.3
1,007,713	-		LRK54_RS04745	0.82	-0.8
1,007,713	-		LRK54_RS04745	0.82	-0.4
1,007,713	-		LRK54_RS04745	0.82	-1.2
1,007,904	+				-2.2
1,007,904	+				-0.0
1,007,904	+				+1.6
1,007,904	+				+0.7
1,007,904	+				-0.3
1,007,905	-				+0.3
1,007,905	-				-0.6
1,007,905	-				-0.3
1,007,945	+				+0.4
1,007,945	+				-1.2
1,007,945	+				+0.6
1,007,945	+				+0.8
1,007,946	-				-0.6
1,007,946	-				-1.3