Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04575

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04565 and LRK54_RS04570 overlap by 4 nucleotidesLRK54_RS04570 and LRK54_RS04575 are separated by 20 nucleotidesLRK54_RS04575 and LRK54_RS04580 overlap by 1 nucleotidesLRK54_RS04580 and LRK54_RS04585 are separated by 110 nucleotides LRK54_RS04565: LRK54_RS04565 - phosphatidylglycerophosphatase A, at 973,306 to 973,830 _RS04565 LRK54_RS04570: LRK54_RS04570 - thiamine-phosphate kinase, at 973,827 to 974,795 _RS04570 LRK54_RS04575: LRK54_RS04575 - transcription antitermination factor NusB, at 974,816 to 975,268 _RS04575 LRK54_RS04580: LRK54_RS04580 - 6,7-dimethyl-8-ribityllumazine synthase, at 975,268 to 975,729 _RS04580 LRK54_RS04585: LRK54_RS04585 - muramoyltetrapeptide carboxypeptidase, at 975,840 to 976,784 _RS04585 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2 3at 976.027 kb on + strand, within LRK54_RS04585at 976.039 kb on + strand, within LRK54_RS04585at 976.039 kb on + strand, within LRK54_RS04585at 976.040 kb on - strand, within LRK54_RS04585at 976.120 kb on + strand, within LRK54_RS04585at 976.120 kb on + strand, within LRK54_RS04585at 976.121 kb on - strand, within LRK54_RS04585at 976.121 kb on - strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.168 kb on + strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.169 kb on - strand, within LRK54_RS04585at 976.213 kb on + strand, within LRK54_RS04585at 976.213 kb on + strand, within LRK54_RS04585at 976.213 kb on + strand, within LRK54_RS04585at 976.213 kb on + strand, within LRK54_RS04585at 976.214 kb on - strand, within LRK54_RS04585at 976.214 kb on - strand, within LRK54_RS04585at 976.214 kb on - strand, within LRK54_RS04585at 976.214 kb on - strand, within LRK54_RS04585at 976.214 kb on - strand, within LRK54_RS04585at 976.215 kb on - strand, within LRK54_RS04585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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976,027 + LRK54_RS04585 0.20 -0.2
976,039 + LRK54_RS04585 0.21 +1.6
976,039 + LRK54_RS04585 0.21 +0.6
976,040 - LRK54_RS04585 0.21 -1.5
976,120 + LRK54_RS04585 0.30 -0.4
976,120 + LRK54_RS04585 0.30 -0.0
976,121 - LRK54_RS04585 0.30 -1.2
976,121 - LRK54_RS04585 0.30 -0.3
976,168 + LRK54_RS04585 0.35 -0.2
976,168 + LRK54_RS04585 0.35 +3.2
976,168 + LRK54_RS04585 0.35 +0.6
976,168 + LRK54_RS04585 0.35 +0.6
976,168 + LRK54_RS04585 0.35 -1.8
976,168 + LRK54_RS04585 0.35 +2.2
976,168 + LRK54_RS04585 0.35 +1.6
976,169 - LRK54_RS04585 0.35 -0.2
976,169 - LRK54_RS04585 0.35 -0.3
976,169 - LRK54_RS04585 0.35 +0.8
976,169 - LRK54_RS04585 0.35 +1.6
976,169 - LRK54_RS04585 0.35 -0.2
976,169 - LRK54_RS04585 0.35 +1.6
976,169 - LRK54_RS04585 0.35 -0.3
976,169 - LRK54_RS04585 0.35 +0.8
976,213 + LRK54_RS04585 0.39 +1.6
976,213 + LRK54_RS04585 0.39 -1.6
976,213 + LRK54_RS04585 0.39 -0.2
976,213 + LRK54_RS04585 0.39 -0.4
976,214 - LRK54_RS04585 0.40 +1.2
976,214 - LRK54_RS04585 0.40 +0.4
976,214 - LRK54_RS04585 0.40 +0.2
976,214 - LRK54_RS04585 0.40 -0.8
976,214 - LRK54_RS04585 0.40 -0.6
976,215 - LRK54_RS04585 0.40 +0.4

Or see this region's nucleotide sequence