Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04240 and LRK54_RS04245 are separated by 352 nucleotides LRK54_RS04245 and LRK54_RS04250 are separated by 66 nucleotides
LRK54_RS04240: LRK54_RS04240 - TonB-dependent siderophore receptor, at 897,686 to 899,896
_RS04240
LRK54_RS04245: LRK54_RS04245 - BON domain-containing protein, at 900,249 to 900,626
_RS04245
LRK54_RS04250: LRK54_RS04250 - PilT/PilU family type 4a pilus ATPase, at 900,693 to 901,859
_RS04250
Position (kb) 900
901 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 899.249 kb on + strand, within LRK54_RS04240 at 899.249 kb on + strand, within LRK54_RS04240 at 899.249 kb on + strand, within LRK54_RS04240 at 899.249 kb on + strand, within LRK54_RS04240 at 899.249 kb on + strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.250 kb on - strand, within LRK54_RS04240 at 899.261 kb on + strand, within LRK54_RS04240 at 899.261 kb on + strand, within LRK54_RS04240 at 899.261 kb on + strand, within LRK54_RS04240 at 899.262 kb on - strand, within LRK54_RS04240 at 899.262 kb on - strand, within LRK54_RS04240 at 899.262 kb on - strand, within LRK54_RS04240 at 899.262 kb on - strand, within LRK54_RS04240 at 899.396 kb on + strand, within LRK54_RS04240 at 899.396 kb on + strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.397 kb on - strand, within LRK54_RS04240 at 899.538 kb on - strand, within LRK54_RS04240 at 899.658 kb on + strand, within LRK54_RS04240 at 899.658 kb on + strand, within LRK54_RS04240 at 899.658 kb on + strand, within LRK54_RS04240 at 899.658 kb on + strand, within LRK54_RS04240 at 899.659 kb on - strand, within LRK54_RS04240 at 899.659 kb on - strand, within LRK54_RS04240 at 899.659 kb on - strand, within LRK54_RS04240 at 899.675 kb on + strand, within LRK54_RS04240 at 899.676 kb on - strand at 899.676 kb on - strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.753 kb on + strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.754 kb on - strand at 899.813 kb on + strand at 899.813 kb on + strand at 899.813 kb on + strand at 899.813 kb on + strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.814 kb on - strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.816 kb on + strand at 899.817 kb on - strand at 899.817 kb on - strand at 899.817 kb on - strand at 899.817 kb on - strand at 899.817 kb on - strand at 899.817 kb on - strand at 899.901 kb on + strand at 899.901 kb on + strand at 899.901 kb on + strand at 899.901 kb on + strand at 899.902 kb on - strand at 899.902 kb on - strand at 899.902 kb on - strand at 899.902 kb on - strand at 899.902 kb on - strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.018 kb on + strand at 900.019 kb on - strand at 900.028 kb on + strand at 900.028 kb on + strand at 900.029 kb on - strand at 900.121 kb on + strand at 900.122 kb on - strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.153 kb on + strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.154 kb on - strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.279 kb on + strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.280 kb on - strand at 900.438 kb on - strand, within LRK54_RS04245 at 900.624 kb on + strand at 900.624 kb on + strand at 900.624 kb on + strand at 900.625 kb on - strand at 900.625 kb on - strand at 900.625 kb on - strand at 900.776 kb on + strand at 900.776 kb on + strand at 900.776 kb on + strand at 900.776 kb on + strand at 900.776 kb on + strand at 900.777 kb on - strand at 900.777 kb on - strand at 900.839 kb on - strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.856 kb on + strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.857 kb on - strand, within LRK54_RS04250 at 900.877 kb on + strand, within LRK54_RS04250 at 900.877 kb on + strand, within LRK54_RS04250 at 900.877 kb on + strand, within LRK54_RS04250 at 900.877 kb on + strand, within LRK54_RS04250 at 900.877 kb on + strand, within LRK54_RS04250 at 900.878 kb on - strand, within LRK54_RS04250 at 900.878 kb on - strand, within LRK54_RS04250 at 900.878 kb on - strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.973 kb on + strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 900.974 kb on - strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 899,249 + LRK54_RS04240 0.71 -1.3 899,249 + LRK54_RS04240 0.71 -3.4 899,249 + LRK54_RS04240 0.71 -2.4 899,249 + LRK54_RS04240 0.71 -1.5 899,249 + LRK54_RS04240 0.71 -0.8 899,250 - LRK54_RS04240 0.71 -0.5 899,250 - LRK54_RS04240 0.71 -2.6 899,250 - LRK54_RS04240 0.71 +0.6 899,250 - LRK54_RS04240 0.71 +0.2 899,250 - LRK54_RS04240 0.71 +2.5 899,250 - LRK54_RS04240 0.71 -0.1 899,261 + LRK54_RS04240 0.71 -0.6 899,261 + LRK54_RS04240 0.71 -2.2 899,261 + LRK54_RS04240 0.71 +1.1 899,262 - LRK54_RS04240 0.71 -1.6 899,262 - LRK54_RS04240 0.71 -1.8 899,262 - LRK54_RS04240 0.71 -0.0 899,262 - LRK54_RS04240 0.71 +0.4 899,396 + LRK54_RS04240 0.77 +0.6 899,396 + LRK54_RS04240 0.77 -2.4 899,397 - LRK54_RS04240 0.77 -0.6 899,397 - LRK54_RS04240 0.77 -0.4 899,397 - LRK54_RS04240 0.77 -0.7 899,397 - LRK54_RS04240 0.77 -0.3 899,397 - LRK54_RS04240 0.77 +0.4 899,397 - LRK54_RS04240 0.77 +0.4 899,538 - LRK54_RS04240 0.84 -3.3 899,658 + LRK54_RS04240 0.89 +0.4 899,658 + LRK54_RS04240 0.89 +0.6 899,658 + LRK54_RS04240 0.89 -0.9 899,658 + LRK54_RS04240 0.89 +0.2 899,659 - LRK54_RS04240 0.89 -2.6 899,659 - LRK54_RS04240 0.89 -1.3 899,659 - LRK54_RS04240 0.89 +0.0 899,675 + LRK54_RS04240 0.90 +0.6 899,676 - -1.4 899,676 - -0.1 899,753 + -3.4 899,753 + -1.3 899,753 + +1.2 899,753 + +1.2 899,753 + -2.4 899,753 + +0.9 899,753 + -1.7 899,753 + -1.8 899,754 - -2.0 899,754 - +0.6 899,754 - -2.3 899,754 - -1.4 899,754 - +0.9 899,754 - -1.4 899,754 - -2.3 899,813 + -2.8 899,813 + +0.2 899,813 + -2.3 899,813 + -0.5 899,814 - -2.1 899,814 - -0.8 899,814 - +0.6 899,814 - -0.6 899,814 - -1.8 899,814 - +0.0 899,814 - -1.6 899,814 - -3.3 899,814 - -2.2 899,816 + -2.6 899,816 + -1.1 899,816 + -0.9 899,816 + -3.0 899,816 + -0.5 899,816 + +0.2 899,816 + +1.6 899,816 + +0.6 899,817 - -0.7 899,817 - -1.6 899,817 - +0.4 899,817 - -0.7 899,817 - +1.9 899,817 - -2.2 899,901 + -0.3 899,901 + +0.4 899,901 + -1.1 899,901 + -1.3 899,902 - -1.9 899,902 - +0.4 899,902 - -0.9 899,902 - -1.6 899,902 - -1.3 900,018 + +1.2 900,018 + +0.1 900,018 + -1.8 900,018 + -2.4 900,018 + +0.2 900,018 + +0.6 900,018 + -2.9 900,019 - -0.9 900,028 + +1.6 900,028 + +0.9 900,029 - +0.4 900,121 + -1.1 900,122 - -1.8 900,153 + -1.8 900,153 + -1.0 900,153 + -0.7 900,153 + -0.1 900,153 + +0.2 900,153 + +1.2 900,153 + -0.5 900,153 + -3.7 900,153 + -0.1 900,153 + +0.9 900,153 + -0.3 900,154 - -0.7 900,154 - -1.4 900,154 - +0.0 900,154 - +0.7 900,154 - -0.1 900,154 - -2.8 900,154 - -1.3 900,154 - +0.9 900,279 + -0.6 900,279 + -0.1 900,279 + +1.2 900,279 + -0.3 900,279 + -1.6 900,279 + -1.3 900,279 + +1.9 900,279 + -1.2 900,279 + -0.5 900,279 + -0.6 900,279 + -1.7 900,279 + -1.0 900,279 + -0.3 900,279 + +1.6 900,279 + -0.8 900,279 + -0.8 900,279 + -0.5 900,279 + +1.6 900,279 + -2.1 900,279 + -0.4 900,279 + +1.6 900,279 + +0.9 900,279 + +0.2 900,279 + +0.2 900,279 + -0.1 900,279 + +1.6 900,279 + -4.2 900,279 + +1.2 900,280 - -1.4 900,280 - -1.1 900,280 - -0.3 900,280 - -1.0 900,280 - +0.6 900,280 - -1.1 900,280 - -0.3 900,280 - -1.2 900,280 - +0.7 900,280 - +0.9 900,280 - +0.4 900,280 - -0.7 900,280 - +0.4 900,280 - +1.2 900,280 - -0.8 900,280 - -1.4 900,280 - -1.1 900,280 - -0.4 900,280 - +0.2 900,280 - -2.1 900,280 - +0.9 900,280 - -1.2 900,280 - -2.5 900,438 - LRK54_RS04245 0.50 -2.9 900,624 + -2.2 900,624 + -0.3 900,624 + +0.4 900,625 - -1.6 900,625 - -0.7 900,625 - -0.4 900,776 + -1.6 900,776 + -0.9 900,776 + +0.4 900,776 + -1.4 900,776 + -1.5 900,777 - -0.5 900,777 - -0.5 900,839 - LRK54_RS04250 0.13 -1.5 900,856 + LRK54_RS04250 0.14 -0.3 900,856 + LRK54_RS04250 0.14 +0.2 900,856 + LRK54_RS04250 0.14 -1.1 900,856 + LRK54_RS04250 0.14 +1.2 900,856 + LRK54_RS04250 0.14 -1.4 900,856 + LRK54_RS04250 0.14 -0.3 900,856 + LRK54_RS04250 0.14 -0.4 900,857 - LRK54_RS04250 0.14 -1.9 900,857 - LRK54_RS04250 0.14 -0.8 900,857 - LRK54_RS04250 0.14 -2.5 900,857 - LRK54_RS04250 0.14 +1.9 900,857 - LRK54_RS04250 0.14 -0.8 900,857 - LRK54_RS04250 0.14 -2.2 900,857 - LRK54_RS04250 0.14 -0.5 900,857 - LRK54_RS04250 0.14 -2.6 900,877 + LRK54_RS04250 0.16 -1.2 900,877 + LRK54_RS04250 0.16 -0.1 900,877 + LRK54_RS04250 0.16 +0.6 900,877 + LRK54_RS04250 0.16 -3.8 900,877 + LRK54_RS04250 0.16 -0.4 900,878 - LRK54_RS04250 0.16 +0.5 900,878 - LRK54_RS04250 0.16 +0.5 900,878 - LRK54_RS04250 0.16 +0.3 900,973 + LRK54_RS04250 0.24 -0.8 900,973 + LRK54_RS04250 0.24 -1.3 900,973 + LRK54_RS04250 0.24 -0.6 900,973 + LRK54_RS04250 0.24 -1.2 900,973 + LRK54_RS04250 0.24 +0.9 900,973 + LRK54_RS04250 0.24 +0.4 900,973 + LRK54_RS04250 0.24 +1.5 900,973 + LRK54_RS04250 0.24 -1.7 900,973 + LRK54_RS04250 0.24 -0.1 900,973 + LRK54_RS04250 0.24 +0.4 900,973 + LRK54_RS04250 0.24 -0.9 900,973 + LRK54_RS04250 0.24 -2.4 900,974 - LRK54_RS04250 0.24 -1.1 900,974 - LRK54_RS04250 0.24 -0.3 900,974 - LRK54_RS04250 0.24 -3.2 900,974 - LRK54_RS04250 0.24 -0.5 900,974 - LRK54_RS04250 0.24 -1.4 900,974 - +2.5 900,974 - LRK54_RS04250 0.24 -1.5 900,974 - LRK54_RS04250 0.24 +1.2 900,974 - LRK54_RS04250 0.24 -1.6 900,974 - LRK54_RS04250 0.24 +0.9 900,974 - LRK54_RS04250 0.24 -0.7 900,974 - LRK54_RS04250 0.24 +1.1 901,360 + LRK54_RS04250 0.57 +0.9 901,360 + LRK54_RS04250 0.57 -1.7 901,360 + LRK54_RS04250 0.57 -1.4 901,360 + LRK54_RS04250 0.57 +0.6 901,361 - LRK54_RS04250 0.57 +1.6 901,361 - LRK54_RS04250 0.57 +0.9 901,361 - LRK54_RS04250 0.57 -0.5 901,361 - LRK54_RS04250 0.57 -0.3 901,388 + LRK54_RS04250 0.60 +0.6 901,388 + LRK54_RS04250 0.60 -1.3 901,388 + LRK54_RS04250 0.60 -2.0 901,388 + LRK54_RS04250 0.60 -0.4 901,388 + LRK54_RS04250 0.60 -1.4 901,388 + LRK54_RS04250 0.60 -0.3 901,388 + LRK54_RS04250 0.60 +0.1 901,388 + LRK54_RS04250 0.60 -1.1 901,388 + LRK54_RS04250 0.60 +1.0 901,388 + LRK54_RS04250 0.60 +0.2 901,388 + LRK54_RS04250 0.60 -2.6 901,388 + LRK54_RS04250 0.60 +1.6 901,388 + LRK54_RS04250 0.60 -1.2 901,388 + LRK54_RS04250 0.60 +0.4 901,388 + LRK54_RS04250 0.60 +0.0 901,388 + LRK54_RS04250 0.60 -0.4 901,388 + LRK54_RS04250 0.60 +0.6 901,389 - LRK54_RS04250 0.60 -0.4 901,389 - LRK54_RS04250 0.60 -2.6 901,389 - LRK54_RS04250 0.60 +0.9 901,389 - LRK54_RS04250 0.60 -0.6 901,389 - LRK54_RS04250 0.60 -0.7 901,389 - LRK54_RS04250 0.60 +0.6 901,389 - LRK54_RS04250 0.60 +4.2 901,389 - LRK54_RS04250 0.60 -0.6 901,571 + LRK54_RS04250 0.75 -2.6 901,571 + LRK54_RS04250 0.75 +1.2 901,571 + LRK54_RS04250 0.75 -0.7 901,571 + LRK54_RS04250 0.75 +1.0 901,572 - LRK54_RS04250 0.75 +0.2 901,572 - LRK54_RS04250 0.75 +0.7 901,591 + LRK54_RS04250 0.77 -2.5 901,591 + LRK54_RS04250 0.77 +1.2 901,591 + LRK54_RS04250 0.77 -0.9 901,591 + LRK54_RS04250 0.77 -1.4 901,591 + LRK54_RS04250 0.77 +0.9 901,591 + LRK54_RS04250 0.77 -0.8 901,592 - LRK54_RS04250 0.77 +0.4 901,592 - LRK54_RS04250 0.77 -0.1 901,592 - LRK54_RS04250 0.77 +0.7
Or see this region's nucleotide sequence