Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03635

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03625 and LRK54_RS03630 are separated by 3 nucleotidesLRK54_RS03630 and LRK54_RS03635 are separated by 296 nucleotidesLRK54_RS03635 and LRK54_RS03640 are separated by 7 nucleotidesLRK54_RS03640 and LRK54_RS03645 are separated by 81 nucleotidesLRK54_RS03645 and LRK54_RS03650 are separated by 106 nucleotides LRK54_RS03625: LRK54_RS03625 - 50S ribosomal protein L1, at 774,477 to 775,181 _RS03625 LRK54_RS03630: LRK54_RS03630 - 50S ribosomal protein L11, at 775,185 to 775,613 _RS03630 LRK54_RS03635: LRK54_RS03635 - transcription termination/antitermination protein NusG, at 775,910 to 776,470 _RS03635 LRK54_RS03640: LRK54_RS03640 - preprotein translocase subunit SecE, at 776,478 to 776,873 _RS03640 LRK54_RS03645: LRK54_RS03645 - tRNA-Trp, at 776,955 to 777,030 _RS03645 LRK54_RS03650: LRK54_RS03650 - elongation factor Tu, at 777,137 to 778,327 _RS03650 Position (kb) 775 776 777Strain fitness (log2 ratio) -2 -1 0 1 2 3at 775.711 kb on - strandat 775.711 kb on - strandat 775.711 kb on - strandat 775.711 kb on - strandat 775.750 kb on - strandat 775.752 kb on - strandat 775.752 kb on - strandat 775.760 kb on - strandat 775.871 kb on + strandat 775.871 kb on + strandat 775.871 kb on + strandat 775.872 kb on - strandat 775.872 kb on - strandat 775.883 kb on + strandat 775.884 kb on - strandat 777.043 kb on - strandat 777.043 kb on - strandat 777.043 kb on - strandat 777.043 kb on - strandat 777.043 kb on - strandat 777.050 kb on - strandat 777.050 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.064 kb on - strandat 777.107 kb on - strandat 777.107 kb on - strandat 777.107 kb on - strandat 777.121 kb on - strandat 777.121 kb on - strandat 777.121 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.135 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strandat 777.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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775,711 - +0.7
775,711 - -1.0
775,711 - +1.2
775,711 - +1.2
775,750 - -1.1
775,752 - +1.6
775,752 - -0.5
775,760 - -0.3
775,871 + +0.1
775,871 + +0.9
775,871 + -0.5
775,872 - +0.1
775,872 - -0.4
775,883 + -0.6
775,884 - -2.3
777,043 - -1.9
777,043 - -0.8
777,043 - +1.8
777,043 - +2.2
777,043 - +1.2
777,050 - -1.8
777,050 - -2.0
777,064 - -0.1
777,064 - +0.7
777,064 - +1.6
777,064 - -1.1
777,064 - -0.5
777,064 - +0.5
777,064 - -1.0
777,107 - -0.7
777,107 - -1.9
777,107 - -2.2
777,121 - -0.0
777,121 - +0.2
777,121 - +1.6
777,135 - -0.3
777,135 - -1.2
777,135 - -0.8
777,135 - +0.0
777,135 - +2.4
777,135 - +1.0
777,135 - -1.0
777,135 - +0.6
777,135 - +0.5
777,135 - +1.0
777,135 - +0.9
777,135 - -1.1
777,135 - +1.2
777,135 - +1.2
777,135 - -0.9
777,135 - -0.4
777,139 - -0.1
777,139 - -0.1
777,139 - +0.0
777,139 - -1.4
777,139 - -0.3
777,139 - +0.6
777,139 - +3.0
777,139 - +0.9
777,139 - +0.4
777,139 - +2.9
777,139 - -1.1

Or see this region's nucleotide sequence