Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02815 and LRK54_RS02820 are separated by 120 nucleotides LRK54_RS02820 and LRK54_RS02825 overlap by 4 nucleotides LRK54_RS02825 and LRK54_RS02830 are separated by 365 nucleotides
LRK54_RS02815: LRK54_RS02815 - hypothetical protein, at 601,493 to 602,098
_RS02815
LRK54_RS02820: LRK54_RS02820 - hypothetical protein, at 602,219 to 602,890
_RS02820
LRK54_RS02825: LRK54_RS02825 - sigma-70 family RNA polymerase sigma factor, at 602,887 to 603,408
_RS02825
LRK54_RS02830: LRK54_RS02830 - hypothetical protein, at 603,774 to 604,259
_RS02830
Position (kb) 602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 602.002 kb on + strand, within LRK54_RS02815 at 602.002 kb on + strand, within LRK54_RS02815 at 602.003 kb on - strand, within LRK54_RS02815 at 602.003 kb on - strand, within LRK54_RS02815 at 602.086 kb on - strand at 602.086 kb on - strand at 602.086 kb on - strand at 602.086 kb on - strand at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.002 kb on + strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.003 kb on - strand, within LRK54_RS02825 at 603.020 kb on + strand, within LRK54_RS02825 at 603.020 kb on + strand, within LRK54_RS02825 at 603.021 kb on - strand, within LRK54_RS02825 at 603.021 kb on - strand, within LRK54_RS02825 at 603.021 kb on - strand, within LRK54_RS02825 at 603.021 kb on - strand, within LRK54_RS02825 at 603.021 kb on - strand, within LRK54_RS02825 at 603.216 kb on - strand, within LRK54_RS02825 at 603.216 kb on - strand, within LRK54_RS02825 at 603.216 kb on - strand, within LRK54_RS02825 at 603.252 kb on - strand, within LRK54_RS02825 at 603.326 kb on + strand, within LRK54_RS02825 at 603.326 kb on + strand, within LRK54_RS02825 at 603.326 kb on + strand, within LRK54_RS02825 at 603.326 kb on + strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.327 kb on - strand, within LRK54_RS02825 at 603.450 kb on + strand at 603.450 kb on + strand at 603.556 kb on + strand at 603.556 kb on + strand at 603.556 kb on + strand at 603.556 kb on + strand at 603.556 kb on + strand at 603.556 kb on + strand at 603.557 kb on - strand at 603.557 kb on - strand at 603.557 kb on - strand at 603.619 kb on + strand at 603.619 kb on + strand at 603.619 kb on + strand at 603.619 kb on + strand at 603.619 kb on + strand at 603.619 kb on + strand at 603.620 kb on - strand at 603.620 kb on - strand at 603.620 kb on - strand at 603.620 kb on - strand at 603.844 kb on + strand, within LRK54_RS02830 at 603.844 kb on + strand, within LRK54_RS02830 at 603.844 kb on + strand, within LRK54_RS02830 at 603.844 kb on + strand, within LRK54_RS02830 at 603.844 kb on + strand, within LRK54_RS02830 at 603.844 kb on + strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.845 kb on - strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.898 kb on + strand, within LRK54_RS02830 at 603.899 kb on - strand, within LRK54_RS02830 at 603.899 kb on - strand, within LRK54_RS02830 at 603.899 kb on - strand, within LRK54_RS02830 at 603.899 kb on - strand, within LRK54_RS02830 at 603.901 kb on + strand, within LRK54_RS02830 at 603.901 kb on + strand, within LRK54_RS02830 at 603.901 kb on + strand, within LRK54_RS02830 at 603.901 kb on + strand, within LRK54_RS02830 at 603.902 kb on - strand, within LRK54_RS02830 at 603.902 kb on - strand, within LRK54_RS02830 at 603.902 kb on - strand, within LRK54_RS02830 at 603.902 kb on - strand, within LRK54_RS02830 at 603.902 kb on - strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.078 kb on + strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.079 kb on - strand, within LRK54_RS02830 at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.242 kb on - strand at 604.242 kb on - strand at 604.242 kb on - strand at 604.242 kb on - strand at 604.242 kb on - strand at 604.312 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.321 kb on + strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.322 kb on - strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.355 kb on + strand at 604.355 kb on + strand at 604.355 kb on + strand at 604.355 kb on + strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.356 kb on - strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.358 kb on + strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand at 604.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 602,002 + LRK54_RS02815 0.84 -1.0 602,002 + LRK54_RS02815 0.84 +1.5 602,003 - LRK54_RS02815 0.84 -2.3 602,003 - LRK54_RS02815 0.84 -0.6 602,086 - +2.1 602,086 - -0.8 602,086 - +0.8 602,086 - -0.6 603,002 + LRK54_RS02825 0.22 +0.3 603,002 + LRK54_RS02825 0.22 -0.3 603,002 + LRK54_RS02825 0.22 -0.8 603,002 + LRK54_RS02825 0.22 -0.3 603,002 + LRK54_RS02825 0.22 -0.8 603,002 + LRK54_RS02825 0.22 +0.3 603,002 + LRK54_RS02825 0.22 -2.2 603,002 + LRK54_RS02825 0.22 -2.2 603,002 + LRK54_RS02825 0.22 -0.0 603,002 + LRK54_RS02825 0.22 -0.8 603,002 + LRK54_RS02825 0.22 -0.6 603,002 + LRK54_RS02825 0.22 -0.2 603,003 - LRK54_RS02825 0.22 -1.4 603,003 - LRK54_RS02825 0.22 -0.6 603,003 - LRK54_RS02825 0.22 -1.3 603,003 - LRK54_RS02825 0.22 +0.3 603,003 - LRK54_RS02825 0.22 -2.4 603,003 - LRK54_RS02825 0.22 -0.2 603,020 + LRK54_RS02825 0.25 -0.9 603,020 + LRK54_RS02825 0.25 -0.8 603,021 - LRK54_RS02825 0.26 -2.2 603,021 - LRK54_RS02825 0.26 -2.5 603,021 - LRK54_RS02825 0.26 -0.5 603,021 - LRK54_RS02825 0.26 +1.1 603,021 - LRK54_RS02825 0.26 -1.0 603,216 - LRK54_RS02825 0.63 -0.0 603,216 - LRK54_RS02825 0.63 +0.5 603,216 - LRK54_RS02825 0.63 +0.5 603,252 - LRK54_RS02825 0.70 -2.9 603,326 + LRK54_RS02825 0.84 +2.5 603,326 + LRK54_RS02825 0.84 +2.1 603,326 + LRK54_RS02825 0.84 -0.0 603,326 + LRK54_RS02825 0.84 +0.0 603,327 - LRK54_RS02825 0.84 +0.1 603,327 - LRK54_RS02825 0.84 -2.0 603,327 - LRK54_RS02825 0.84 -1.6 603,327 - LRK54_RS02825 0.84 -1.0 603,327 - LRK54_RS02825 0.84 +1.5 603,327 - LRK54_RS02825 0.84 +2.1 603,450 + -1.1 603,450 + +0.1 603,556 + -2.1 603,556 + +1.4 603,556 + -1.3 603,556 + +0.5 603,556 + -0.5 603,556 + -0.8 603,557 - -0.3 603,557 - -0.2 603,557 - -1.3 603,619 + +1.5 603,619 + -0.8 603,619 + -4.2 603,619 + +0.1 603,619 + -1.0 603,619 + -0.1 603,620 - -1.6 603,620 - -0.4 603,620 - -0.4 603,620 - +0.8 603,844 + LRK54_RS02830 0.14 +0.4 603,844 + LRK54_RS02830 0.14 +0.5 603,844 + LRK54_RS02830 0.14 -1.3 603,844 + LRK54_RS02830 0.14 -1.3 603,844 + LRK54_RS02830 0.14 -2.5 603,844 + LRK54_RS02830 0.14 -0.7 603,845 - LRK54_RS02830 0.15 -0.0 603,845 - LRK54_RS02830 0.15 -1.8 603,845 - LRK54_RS02830 0.15 -2.0 603,845 - LRK54_RS02830 0.15 +1.5 603,845 - LRK54_RS02830 0.15 -0.8 603,845 - LRK54_RS02830 0.15 -0.9 603,898 + LRK54_RS02830 0.26 -2.2 603,898 + LRK54_RS02830 0.26 -0.5 603,898 + LRK54_RS02830 0.26 -0.5 603,898 + LRK54_RS02830 0.26 -0.8 603,898 + LRK54_RS02830 0.26 -1.9 603,898 + LRK54_RS02830 0.26 -0.6 603,898 + LRK54_RS02830 0.26 -1.4 603,899 - LRK54_RS02830 0.26 -1.9 603,899 - LRK54_RS02830 0.26 -0.3 603,899 - LRK54_RS02830 0.26 -1.2 603,899 - LRK54_RS02830 0.26 -1.0 603,901 + LRK54_RS02830 0.26 -0.5 603,901 + LRK54_RS02830 0.26 -2.0 603,901 + LRK54_RS02830 0.26 +1.5 603,901 + LRK54_RS02830 0.26 +0.0 603,902 - LRK54_RS02830 0.26 -2.2 603,902 - LRK54_RS02830 0.26 -1.6 603,902 - LRK54_RS02830 0.26 -1.6 603,902 - LRK54_RS02830 0.26 -1.3 603,902 - LRK54_RS02830 0.26 -0.2 604,078 + LRK54_RS02830 0.63 -1.4 604,078 + LRK54_RS02830 0.63 -1.6 604,078 + LRK54_RS02830 0.63 -1.1 604,078 + LRK54_RS02830 0.63 +0.5 604,078 + LRK54_RS02830 0.63 -0.4 604,078 + LRK54_RS02830 0.63 -1.8 604,078 + LRK54_RS02830 0.63 -1.5 604,078 + LRK54_RS02830 0.63 -1.3 604,078 + LRK54_RS02830 0.63 +0.7 604,078 + LRK54_RS02830 0.63 +0.3 604,078 + LRK54_RS02830 0.63 +1.1 604,078 + LRK54_RS02830 0.63 +1.1 604,078 + LRK54_RS02830 0.63 +0.5 604,078 + LRK54_RS02830 0.63 -1.4 604,078 + LRK54_RS02830 0.63 -1.0 604,078 + LRK54_RS02830 0.63 +2.1 604,078 + LRK54_RS02830 0.63 -1.5 604,078 + LRK54_RS02830 0.63 -0.3 604,078 + LRK54_RS02830 0.63 +0.2 604,078 + LRK54_RS02830 0.63 -1.2 604,078 + LRK54_RS02830 0.63 -0.8 604,078 + LRK54_RS02830 0.63 +0.1 604,078 + LRK54_RS02830 0.63 -0.5 604,078 + LRK54_RS02830 0.63 -0.2 604,078 + LRK54_RS02830 0.63 -0.4 604,078 + LRK54_RS02830 0.63 +1.5 604,078 + LRK54_RS02830 0.63 +1.5 604,079 - LRK54_RS02830 0.63 -0.7 604,079 - LRK54_RS02830 0.63 -1.3 604,079 - LRK54_RS02830 0.63 -1.3 604,079 - LRK54_RS02830 0.63 +2.1 604,079 - LRK54_RS02830 0.63 -0.6 604,079 - LRK54_RS02830 0.63 -1.0 604,079 - LRK54_RS02830 0.63 +2.1 604,079 - LRK54_RS02830 0.63 -0.1 604,079 - LRK54_RS02830 0.63 +0.1 604,079 - LRK54_RS02830 0.63 +0.5 604,079 - LRK54_RS02830 0.63 +1.5 604,079 - LRK54_RS02830 0.63 +1.1 604,079 - LRK54_RS02830 0.63 +0.3 604,079 - LRK54_RS02830 0.63 +1.5 604,079 - LRK54_RS02830 0.63 +0.8 604,079 - LRK54_RS02830 0.63 +0.8 604,079 - LRK54_RS02830 0.63 -0.2 604,079 - LRK54_RS02830 0.63 +0.8 604,079 - LRK54_RS02830 0.63 -1.7 604,079 - LRK54_RS02830 0.63 +0.4 604,079 - LRK54_RS02830 0.63 -1.6 604,079 - LRK54_RS02830 0.63 -2.2 604,079 - LRK54_RS02830 0.63 -0.6 604,079 - LRK54_RS02830 0.63 -0.5 604,079 - LRK54_RS02830 0.63 +0.8 604,079 - LRK54_RS02830 0.63 +1.5 604,241 + -1.7 604,241 + -3.0 604,241 + -0.3 604,241 + -0.5 604,241 + -1.4 604,241 + -0.2 604,242 - -1.6 604,242 - -2.7 604,242 - +0.3 604,242 - -0.3 604,242 - +1.5 604,312 + -2.3 604,321 + -0.2 604,321 + -0.3 604,321 + -1.0 604,321 + +0.6 604,321 + -1.2 604,321 + +1.1 604,321 + -0.5 604,322 - -1.7 604,322 - -2.1 604,322 - -0.3 604,322 - +1.1 604,322 - +2.3 604,322 - -1.4 604,322 - -0.5 604,322 - -1.6 604,322 - +0.5 604,322 - -0.2 604,351 + +0.3 604,351 + -1.0 604,351 + -2.0 604,351 + -2.7 604,351 + -2.3 604,351 + -0.0 604,351 + -1.0 604,351 + -0.2 604,351 + +3.1 604,351 + -2.7 604,351 + -0.0 604,351 + -3.5 604,352 - -1.8 604,352 - -0.7 604,352 - -2.5 604,352 - -0.3 604,352 - -2.7 604,352 - +0.7 604,352 - +0.9 604,355 + -0.5 604,355 + -1.7 604,355 + -0.2 604,355 + +0.1 604,356 - +0.9 604,356 - -1.9 604,356 - -1.1 604,356 - -0.3 604,356 - -0.3 604,356 - -1.1 604,356 - -0.5 604,358 + +1.5 604,358 + -1.0 604,358 + -2.2 604,358 + -0.5 604,358 + -1.2 604,358 + -1.0 604,358 + -0.9 604,358 + -0.3 604,358 + -1.3 604,358 + +0.8 604,358 + -0.8 604,358 + +0.5 604,358 + -0.9 604,358 + -0.8 604,358 + -1.9 604,358 + +1.5 604,358 + -0.8 604,358 + +0.5 604,358 + -1.3 604,358 + -1.4 604,359 - -0.3 604,359 - +0.7 604,359 - -1.0 604,359 - +1.1 604,359 - -1.2 604,359 - -1.3 604,359 - -0.4 604,359 - -0.9 604,359 - -2.8 604,359 - -1.0 604,359 - -2.0 604,359 - -0.5 604,359 - +0.1 604,359 - -1.4 604,359 - -0.8 604,359 - -0.3 604,359 - -0.9 604,359 - -0.5 604,359 - -1.2 604,359 - -1.2 604,359 - -0.6 604,359 - -1.0 604,359 - -2.2
Or see this region's nucleotide sequence