Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02705 and LRK54_RS02710 are separated by 93 nucleotides LRK54_RS02710 and LRK54_RS02715 are separated by 91 nucleotides LRK54_RS02715 and LRK54_RS02720 are separated by 21 nucleotides
LRK54_RS02705: LRK54_RS02705 - nitronate monooxygenase, at 579,161 to 580,228
_RS02705
LRK54_RS02710: LRK54_RS02710 - pentapeptide MXKDX repeat protein, at 580,322 to 580,594
_RS02710
LRK54_RS02715: LRK54_RS02715 - DUF1345 domain-containing protein, at 580,686 to 581,378
_RS02715
LRK54_RS02720: LRK54_RS02720 - N-acetyltransferase, at 581,400 to 581,675
_RS02720
Position (kb) 580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 579.342 kb on + strand, within LRK54_RS02705 at 579.343 kb on - strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.262 kb on - strand at 580.563 kb on - strand, within LRK54_RS02710 at 580.563 kb on - strand, within LRK54_RS02710 at 580.673 kb on + strand at 580.673 kb on + strand at 580.673 kb on + strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.847 kb on - strand, within LRK54_RS02715 at 580.847 kb on - strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.877 kb on + strand, within LRK54_RS02715 at 580.878 kb on - strand, within LRK54_RS02715 at 580.920 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.925 kb on - strand, within LRK54_RS02715 at 580.925 kb on - strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 581.420 kb on - strand at 581.420 kb on - strand at 581.420 kb on - strand at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 579,342 + LRK54_RS02705 0.17 -1.1 579,343 - LRK54_RS02705 0.17 -0.6 579,835 + LRK54_RS02705 0.63 +0.7 579,835 + LRK54_RS02705 0.63 +1.5 579,835 + LRK54_RS02705 0.63 +2.0 579,835 + LRK54_RS02705 0.63 +1.5 579,835 + LRK54_RS02705 0.63 -0.3 579,835 + LRK54_RS02705 0.63 +1.8 579,836 - LRK54_RS02705 0.63 -3.2 579,836 - LRK54_RS02705 0.63 -0.4 579,836 - LRK54_RS02705 0.63 -2.7 579,836 - LRK54_RS02705 0.63 -2.3 579,836 - LRK54_RS02705 0.63 -0.5 579,836 - LRK54_RS02705 0.63 -2.2 580,032 + LRK54_RS02705 0.82 +1.4 580,032 + LRK54_RS02705 0.82 -0.2 580,032 + LRK54_RS02705 0.82 -0.0 580,032 + LRK54_RS02705 0.82 +0.5 580,032 + LRK54_RS02705 0.82 -2.0 580,032 + LRK54_RS02705 0.82 -0.4 580,033 - LRK54_RS02705 0.82 -0.6 580,033 - LRK54_RS02705 0.82 +0.9 580,033 - LRK54_RS02705 0.82 +1.7 580,033 - LRK54_RS02705 0.82 +0.0 580,033 - LRK54_RS02705 0.82 +0.1 580,096 - LRK54_RS02705 0.88 -0.0 580,096 - LRK54_RS02705 0.88 -0.3 580,096 - LRK54_RS02705 0.88 +0.3 580,222 + -1.1 580,222 + +0.8 580,222 + -2.4 580,222 + -2.6 580,222 + +3.1 580,222 + -0.2 580,222 + +1.4 580,222 + -0.9 580,222 + +3.1 580,222 + -0.3 580,222 + -1.5 580,222 + +0.8 580,222 + +0.5 580,222 + -1.3 580,222 + +0.8 580,222 + +3.1 580,222 + -2.2 580,222 + +0.3 580,222 + +3.9 580,222 + +1.6 580,222 + +2.1 580,222 + +0.6 580,222 + +1.1 580,222 + +0.1 580,222 + +2.1 580,222 + +2.1 580,222 + -0.9 580,222 + -0.9 580,222 + +0.3 580,222 + -1.9 580,222 + +2.1 580,222 + -1.0 580,222 + -0.2 580,222 + -0.2 580,222 + -0.8 580,222 + -2.0 580,222 + -0.4 580,222 + -2.0 580,222 + -0.6 580,222 + -1.0 580,222 + -0.6 580,223 - -2.9 580,223 - +2.1 580,223 - -1.3 580,223 - +0.8 580,223 - +1.5 580,223 - -1.8 580,223 - -1.9 580,223 - +0.2 580,223 - -0.8 580,223 - -2.0 580,223 - -0.1 580,223 - -0.0 580,223 - -0.5 580,223 - -0.7 580,223 - +3.1 580,223 - -0.2 580,223 - -0.8 580,223 - +0.1 580,223 - -0.3 580,223 - -2.5 580,223 - -2.7 580,223 - +0.5 580,223 - +1.2 580,223 - -0.5 580,223 - +1.5 580,223 - -0.5 580,223 - +0.4 580,223 - -0.0 580,223 - -1.3 580,223 - -2.4 580,223 - +1.5 580,223 - +0.5 580,223 - +2.1 580,223 - -1.5 580,223 - -1.0 580,262 - -0.7 580,563 - LRK54_RS02710 0.88 -1.1 580,563 - LRK54_RS02710 0.88 -1.4 580,673 + -2.4 580,673 + +0.5 580,673 + -0.8 580,674 - -1.9 580,674 - -2.3 580,674 - +0.3 580,674 - +0.1 580,709 + +1.1 580,709 + +1.5 580,709 + -0.0 580,709 + -1.0 580,710 - -2.0 580,710 - -0.3 580,710 - +1.0 580,710 - -1.0 580,786 + LRK54_RS02715 0.14 -0.5 580,786 + LRK54_RS02715 0.14 -2.9 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 +0.9 580,786 + LRK54_RS02715 0.14 -2.9 580,786 + LRK54_RS02715 0.14 +2.7 580,786 + LRK54_RS02715 0.14 +0.3 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 +1.8 580,786 + LRK54_RS02715 0.14 +0.8 580,786 + LRK54_RS02715 0.14 -0.1 580,786 + LRK54_RS02715 0.14 -0.8 580,786 + LRK54_RS02715 0.14 +2.1 580,786 + LRK54_RS02715 0.14 +0.5 580,786 + LRK54_RS02715 0.14 -0.8 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 +2.1 580,786 + LRK54_RS02715 0.14 -0.7 580,786 + LRK54_RS02715 0.14 -0.9 580,786 + LRK54_RS02715 0.14 +0.1 580,786 + LRK54_RS02715 0.14 +0.8 580,787 - LRK54_RS02715 0.15 +0.8 580,787 - LRK54_RS02715 0.15 +0.8 580,787 - LRK54_RS02715 0.15 +0.1 580,787 - LRK54_RS02715 0.15 -1.5 580,787 - LRK54_RS02715 0.15 +1.0 580,787 - LRK54_RS02715 0.15 +0.8 580,787 - LRK54_RS02715 0.15 -2.2 580,787 - LRK54_RS02715 0.15 +1.1 580,787 - LRK54_RS02715 0.15 -0.7 580,787 - LRK54_RS02715 0.15 -1.4 580,787 - LRK54_RS02715 0.15 +0.7 580,787 - LRK54_RS02715 0.15 -0.4 580,787 - LRK54_RS02715 0.15 -0.3 580,787 - LRK54_RS02715 0.15 -1.0 580,787 - LRK54_RS02715 0.15 +0.5 580,787 - LRK54_RS02715 0.15 -2.2 580,787 - LRK54_RS02715 0.15 +0.3 580,846 + LRK54_RS02715 0.23 -0.1 580,846 + LRK54_RS02715 0.23 +1.1 580,846 + LRK54_RS02715 0.23 -1.0 580,846 + LRK54_RS02715 0.23 -0.3 580,846 + LRK54_RS02715 0.23 -0.6 580,846 + LRK54_RS02715 0.23 -1.0 580,846 + LRK54_RS02715 0.23 -0.5 580,847 - LRK54_RS02715 0.23 +0.8 580,847 - LRK54_RS02715 0.23 -0.2 580,861 + LRK54_RS02715 0.25 +0.2 580,861 + LRK54_RS02715 0.25 +0.9 580,861 + LRK54_RS02715 0.25 -2.3 580,862 - LRK54_RS02715 0.25 -0.2 580,862 - LRK54_RS02715 0.25 +0.1 580,862 - LRK54_RS02715 0.25 -0.9 580,862 - LRK54_RS02715 0.25 +0.3 580,877 + LRK54_RS02715 0.28 +0.1 580,878 - LRK54_RS02715 0.28 -0.0 580,920 + LRK54_RS02715 0.34 -2.3 580,921 + LRK54_RS02715 0.34 -0.3 580,921 + LRK54_RS02715 0.34 -0.5 580,921 + LRK54_RS02715 0.34 -0.6 580,921 + LRK54_RS02715 0.34 +0.1 580,921 + LRK54_RS02715 0.34 +0.8 580,921 + LRK54_RS02715 0.34 -0.3 580,921 + LRK54_RS02715 0.34 +0.5 580,921 + LRK54_RS02715 0.34 -1.3 580,921 + LRK54_RS02715 0.34 -3.0 580,921 + LRK54_RS02715 0.34 +0.0 580,921 + LRK54_RS02715 0.34 -1.6 580,921 + LRK54_RS02715 0.34 +1.1 580,922 - LRK54_RS02715 0.34 +0.8 580,922 - LRK54_RS02715 0.34 -1.0 580,922 - LRK54_RS02715 0.34 -0.6 580,922 - LRK54_RS02715 0.34 -1.0 580,922 - LRK54_RS02715 0.34 -1.8 580,922 - LRK54_RS02715 0.34 +0.3 580,922 - LRK54_RS02715 0.34 +0.1 580,922 - LRK54_RS02715 0.34 -0.6 580,922 - LRK54_RS02715 0.34 -2.3 580,922 - LRK54_RS02715 0.34 -0.2 580,922 - LRK54_RS02715 0.34 +2.1 580,922 - LRK54_RS02715 0.34 -1.0 580,922 - LRK54_RS02715 0.34 +0.5 580,922 - LRK54_RS02715 0.34 +1.2 580,922 - LRK54_RS02715 0.34 -1.0 580,925 - LRK54_RS02715 0.34 -2.8 580,925 - LRK54_RS02715 0.34 +0.3 580,936 + LRK54_RS02715 0.36 -0.7 580,936 + LRK54_RS02715 0.36 +0.3 580,936 + LRK54_RS02715 0.36 +0.5 580,936 + LRK54_RS02715 0.36 -0.0 580,937 - LRK54_RS02715 0.36 -0.7 580,937 - LRK54_RS02715 0.36 -2.0 580,937 - LRK54_RS02715 0.36 -0.0 580,937 - LRK54_RS02715 0.36 -1.4 580,937 - LRK54_RS02715 0.36 -0.8 580,937 - LRK54_RS02715 0.36 +1.1 581,420 - -0.7 581,420 - -0.1 581,420 - -1.1 581,452 + LRK54_RS02720 0.19 +3.1 581,452 + LRK54_RS02720 0.19 +1.1 581,452 + LRK54_RS02720 0.19 +1.4 581,452 + LRK54_RS02720 0.19 +0.4 581,452 + LRK54_RS02720 0.19 -2.6 581,452 + LRK54_RS02720 0.19 +1.1 581,452 + LRK54_RS02720 0.19 +0.8 581,452 + LRK54_RS02720 0.19 +1.5 581,452 + LRK54_RS02720 0.19 -1.3 581,452 + LRK54_RS02720 0.19 +1.1 581,452 + LRK54_RS02720 0.19 +3.7 581,452 + LRK54_RS02720 0.19 -2.2 581,452 + LRK54_RS02720 0.19 -0.5 581,452 + LRK54_RS02720 0.19 -2.8 581,453 - LRK54_RS02720 0.19 -0.7 581,453 - LRK54_RS02720 0.19 -2.1 581,453 - LRK54_RS02720 0.19 -1.3 581,453 - LRK54_RS02720 0.19 -0.9 581,453 - LRK54_RS02720 0.19 -0.6 581,453 - LRK54_RS02720 0.19 -0.5 581,453 - LRK54_RS02720 0.19 -1.5 581,453 - LRK54_RS02720 0.19 -1.0 581,453 - LRK54_RS02720 0.19 +2.1 581,453 - LRK54_RS02720 0.19 -1.8 581,453 - LRK54_RS02720 0.19 -1.7 581,453 - LRK54_RS02720 0.19 -0.5 581,453 - LRK54_RS02720 0.19 -0.2 581,453 - LRK54_RS02720 0.19 -1.4 581,453 - LRK54_RS02720 0.19 -0.0 581,453 - LRK54_RS02720 0.19 -0.2
Or see this region's nucleotide sequence