Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01925 and LRK54_RS01930 are separated by 82 nucleotides LRK54_RS01930 and LRK54_RS01935 are separated by 722 nucleotides LRK54_RS01935 and LRK54_RS01940 are separated by 107 nucleotides
LRK54_RS01925: LRK54_RS01925 - TolC family protein, at 405,698 to 406,957
_RS01925
LRK54_RS01930: LRK54_RS01930 - hypothetical protein, at 407,040 to 407,453
_RS01930
LRK54_RS01935: LRK54_RS01935 - DUF2933 domain-containing protein, at 408,176 to 408,328
_RS01935
LRK54_RS01940: LRK54_RS01940 - isoprenylcysteine carboxylmethyltransferase family protein, at 408,436 to 409,098
_RS01940
Position (kb) 407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 406.120 kb on - strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.521 kb on - strand, within LRK54_RS01925 at 406.521 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.726 kb on - strand, within LRK54_RS01925 at 406.944 kb on + strand at 406.945 kb on - strand at 406.945 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.258 kb on + strand, within LRK54_RS01930 at 407.259 kb on - strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.465 kb on + strand at 407.465 kb on + strand at 407.465 kb on + strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.477 kb on + strand at 407.477 kb on + strand at 407.477 kb on + strand at 407.478 kb on - strand at 407.478 kb on - strand at 407.478 kb on - strand at 407.602 kb on + strand at 407.602 kb on + strand at 407.602 kb on + strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.654 kb on + strand at 407.695 kb on + strand at 407.696 kb on - strand at 407.806 kb on + strand at 407.807 kb on - strand at 407.807 kb on - strand at 407.911 kb on + strand at 408.114 kb on + strand at 408.114 kb on + strand at 408.115 kb on - strand at 408.134 kb on + strand at 408.135 kb on - strand at 408.135 kb on - strand at 408.197 kb on + strand, within LRK54_RS01935 at 408.197 kb on + strand, within LRK54_RS01935 at 408.197 kb on + strand, within LRK54_RS01935 at 408.198 kb on - strand, within LRK54_RS01935 at 408.198 kb on - strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.243 kb on - strand, within LRK54_RS01935 at 408.243 kb on - strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.255 kb on + strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 406,120 - LRK54_RS01925 0.33 +0.1 406,520 + LRK54_RS01925 0.65 +0.5 406,520 + LRK54_RS01925 0.65 +0.3 406,520 + LRK54_RS01925 0.65 +0.8 406,520 + LRK54_RS01925 0.65 +1.1 406,520 + LRK54_RS01925 0.65 -0.6 406,520 + LRK54_RS01925 0.65 -2.1 406,521 - LRK54_RS01925 0.65 +0.5 406,521 - LRK54_RS01925 0.65 -2.1 406,670 - LRK54_RS01925 0.77 +0.8 406,670 - LRK54_RS01925 0.77 -0.0 406,670 - LRK54_RS01925 0.77 -0.1 406,670 - LRK54_RS01925 0.77 +0.5 406,726 - LRK54_RS01925 0.82 -0.9 406,944 + -0.4 406,945 - -0.8 406,945 - +0.3 407,059 + -0.4 407,059 + +1.8 407,059 + -2.6 407,059 + -1.2 407,060 - -1.9 407,060 - +1.6 407,060 - -1.3 407,060 - +0.1 407,060 - +0.6 407,060 - -1.2 407,060 - -4.1 407,060 - -1.4 407,258 + LRK54_RS01930 0.53 +0.3 407,259 - LRK54_RS01930 0.53 -0.2 407,356 + LRK54_RS01930 0.76 -2.3 407,356 + LRK54_RS01930 0.76 -2.7 407,356 + LRK54_RS01930 0.76 -0.2 407,356 + LRK54_RS01930 0.76 -1.6 407,356 + LRK54_RS01930 0.76 -1.1 407,357 - LRK54_RS01930 0.77 +0.8 407,357 - LRK54_RS01930 0.77 +0.2 407,357 - LRK54_RS01930 0.77 -0.8 407,457 + -1.6 407,457 + -1.3 407,457 + -1.1 407,457 + -1.1 407,457 + +0.5 407,457 + -0.8 407,457 + +1.4 407,458 - +1.5 407,458 - +1.1 407,458 - +0.2 407,458 - +1.1 407,458 - +0.4 407,458 - -0.4 407,458 - +0.4 407,461 + -0.7 407,461 + +1.1 407,461 + -0.1 407,461 + -2.0 407,461 + -2.2 407,462 - +1.1 407,462 - -0.1 407,462 - -1.3 407,462 - -1.2 407,462 - +1.5 407,462 - -0.3 407,463 + -1.6 407,463 + -0.1 407,463 + -0.4 407,463 + -0.0 407,463 + -0.7 407,463 + +0.8 407,463 + -0.9 407,463 + -1.9 407,463 + -1.6 407,463 + -1.8 407,463 + -0.8 407,463 + -0.2 407,463 + -0.1 407,463 + +0.1 407,463 + +1.1 407,463 + +0.8 407,463 + +1.5 407,463 + -1.2 407,464 - -0.5 407,464 - -2.0 407,464 - -0.1 407,464 - -0.1 407,464 - -0.9 407,464 - -1.9 407,464 - -1.9 407,464 - +0.1 407,464 - -1.7 407,464 - -0.2 407,464 - +2.1 407,464 - +1.1 407,464 - -0.1 407,464 - -1.6 407,464 - -0.5 407,464 - +0.7 407,465 + +0.1 407,465 + +1.1 407,465 + +0.3 407,466 - -0.6 407,466 - +0.1 407,466 - -0.2 407,466 - -0.6 407,466 - -0.4 407,466 - -1.6 407,477 + -0.8 407,477 + -1.0 407,477 + -0.6 407,478 - -0.4 407,478 - -1.2 407,478 - +2.1 407,602 + -0.4 407,602 + -1.1 407,602 + -2.3 407,603 - -0.7 407,603 - -0.1 407,603 - +0.3 407,603 - -0.8 407,603 - -1.9 407,603 - +0.1 407,654 + -1.5 407,695 + -0.5 407,696 - +0.3 407,806 + +1.1 407,807 - -1.4 407,807 - +0.7 407,911 + -0.5 408,114 + -0.1 408,114 + -0.6 408,115 - +0.5 408,134 + -0.9 408,135 - -0.2 408,135 - -1.2 408,197 + LRK54_RS01935 0.14 -0.6 408,197 + LRK54_RS01935 0.14 -2.4 408,197 + LRK54_RS01935 0.14 +0.3 408,198 - LRK54_RS01935 0.14 +0.8 408,198 - LRK54_RS01935 0.14 -1.5 408,242 + LRK54_RS01935 0.43 +0.8 408,242 + LRK54_RS01935 0.43 -0.9 408,242 + LRK54_RS01935 0.43 +2.1 408,243 - LRK54_RS01935 0.44 -0.2 408,243 - LRK54_RS01935 0.44 -0.4 408,246 + LRK54_RS01935 0.46 -0.7 408,246 + LRK54_RS01935 0.46 -1.7 408,246 + LRK54_RS01935 0.46 -3.6 408,246 + LRK54_RS01935 0.46 +3.1 408,247 - LRK54_RS01935 0.46 -1.0 408,247 - LRK54_RS01935 0.46 -0.8 408,247 - LRK54_RS01935 0.46 +0.1 408,255 + LRK54_RS01935 0.52 -0.8 408,256 - LRK54_RS01935 0.52 +2.1 408,256 - LRK54_RS01935 0.52 +0.2 408,256 - LRK54_RS01935 0.52 +0.5 408,256 - LRK54_RS01935 0.52 -0.2 408,279 + LRK54_RS01935 0.67 +1.1 408,279 + LRK54_RS01935 0.67 +0.1 408,279 + LRK54_RS01935 0.67 +0.3 408,279 + LRK54_RS01935 0.67 -1.5 408,279 + LRK54_RS01935 0.67 -1.0 408,279 + LRK54_RS01935 0.67 +2.1 408,279 + LRK54_RS01935 0.67 +0.1 408,279 + LRK54_RS01935 0.67 -2.2 408,279 + LRK54_RS01935 0.67 -0.1 408,280 - LRK54_RS01935 0.68 -0.2 408,280 - LRK54_RS01935 0.68 -0.6 408,280 - LRK54_RS01935 0.68 -1.9 408,283 + LRK54_RS01935 0.70 +0.1 408,283 + LRK54_RS01935 0.70 +0.5 408,283 + LRK54_RS01935 0.70 +1.5 408,283 + LRK54_RS01935 0.70 -0.0 408,283 + LRK54_RS01935 0.70 -0.1 408,283 + LRK54_RS01935 0.70 +0.5 408,283 + LRK54_RS01935 0.70 +0.1 408,283 + LRK54_RS01935 0.70 -0.8 408,283 + LRK54_RS01935 0.70 -3.4 408,283 + LRK54_RS01935 0.70 -0.8 408,283 + LRK54_RS01935 0.70 -1.6 408,283 + LRK54_RS01935 0.70 -1.3 408,283 + LRK54_RS01935 0.70 -3.1 408,283 + LRK54_RS01935 0.70 -0.4 408,283 + LRK54_RS01935 0.70 -2.3 408,283 + LRK54_RS01935 0.70 +1.5 408,283 + LRK54_RS01935 0.70 -0.2 408,283 + LRK54_RS01935 0.70 -2.0 408,283 + LRK54_RS01935 0.70 +0.9 408,284 - LRK54_RS01935 0.71 -1.1 408,284 - LRK54_RS01935 0.71 -1.0 408,284 - LRK54_RS01935 0.71 -0.1 408,284 - LRK54_RS01935 0.71 +2.4 408,284 - LRK54_RS01935 0.71 -1.1 408,284 - LRK54_RS01935 0.71 -1.7 408,284 - LRK54_RS01935 0.71 -1.3 408,284 - LRK54_RS01935 0.71 -2.2 408,284 - LRK54_RS01935 0.71 -0.6 408,284 - LRK54_RS01935 0.71 -0.8 408,284 - LRK54_RS01935 0.71 -0.9 408,284 - LRK54_RS01935 0.71 +0.1
Or see this region's nucleotide sequence