Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01150

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01145 and LRK54_RS01150 overlap by 10 nucleotidesLRK54_RS01150 and LRK54_RS01155 overlap by 4 nucleotidesLRK54_RS01155 and LRK54_RS01160 overlap by 4 nucleotides LRK54_RS01145: LRK54_RS01145 - PIG-L family deacetylase, at 256,254 to 257,246 _RS01145 LRK54_RS01150: LRK54_RS01150 - DNA polymerase III subunit delta', at 257,237 to 258,172 _RS01150 LRK54_RS01155: LRK54_RS01155 - dTMP kinase, at 258,169 to 258,810 _RS01155 LRK54_RS01160: LRK54_RS01160 - endolytic transglycosylase MltG, at 258,807 to 259,844 _RS01160 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 256.246 kb on + strandat 256.247 kb on - strandat 256.247 kb on - strandat 256.247 kb on - strandat 256.247 kb on - strandat 256.247 kb on - strandat 256.247 kb on - strandat 256.694 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.705 kb on + strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.706 kb on - strand, within LRK54_RS01145at 256.812 kb on + strand, within LRK54_RS01145at 256.812 kb on + strand, within LRK54_RS01145at 256.812 kb on + strand, within LRK54_RS01145at 256.812 kb on + strand, within LRK54_RS01145at 256.812 kb on + strand, within LRK54_RS01145at 256.813 kb on - strand, within LRK54_RS01145at 256.813 kb on - strand, within LRK54_RS01145at 256.813 kb on - strand, within LRK54_RS01145at 256.813 kb on - strand, within LRK54_RS01145at 258.829 kb on + strandat 258.829 kb on + strandat 258.829 kb on + strandat 258.830 kb on - strandat 258.830 kb on - strandat 258.830 kb on - strandat 258.830 kb on - strandat 258.904 kb on + strandat 258.904 kb on + strandat 258.904 kb on + strandat 258.904 kb on + strandat 258.904 kb on + strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.905 kb on - strandat 258.996 kb on - strand, within LRK54_RS01160at 258.996 kb on - strand, within LRK54_RS01160at 258.996 kb on - strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.997 kb on + strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 258.998 kb on - strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strandat 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.006 kb on + strand, within LRK54_RS01160at 259.007 kb on - strand, within LRK54_RS01160at 259.007 kb on - strand, within LRK54_RS01160at 259.007 kb on - strand, within LRK54_RS01160at 259.051 kb on + strand, within LRK54_RS01160at 259.051 kb on + strand, within LRK54_RS01160at 259.052 kb on - strand, within LRK54_RS01160at 259.052 kb on - strand, within LRK54_RS01160at 259.052 kb on - strand, within LRK54_RS01160at 259.052 kb on - strand, within LRK54_RS01160at 259.052 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160at 259.070 kb on - strand, within LRK54_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
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256,246 + -1.0
256,247 - +2.1
256,247 - -1.1
256,247 - -0.5
256,247 - -0.9
256,247 - -0.2
256,247 - +0.6
256,694 + LRK54_RS01145 0.44 -0.8
256,705 + LRK54_RS01145 0.45 -2.0
256,705 + LRK54_RS01145 0.45 +1.1
256,705 + LRK54_RS01145 0.45 +1.3
256,705 + LRK54_RS01145 0.45 -0.3
256,705 + LRK54_RS01145 0.45 -0.5
256,705 + LRK54_RS01145 0.45 +0.8
256,705 + LRK54_RS01145 0.45 -0.5
256,705 + LRK54_RS01145 0.45 -0.2
256,705 + LRK54_RS01145 0.45 -2.2
256,706 - LRK54_RS01145 0.46 -0.5
256,706 - LRK54_RS01145 0.46 +0.7
256,706 - LRK54_RS01145 0.46 +0.8
256,706 - LRK54_RS01145 0.46 +0.1
256,706 - LRK54_RS01145 0.46 -0.6
256,706 - LRK54_RS01145 0.46 -0.9
256,706 - LRK54_RS01145 0.46 -0.5
256,706 - LRK54_RS01145 0.46 -1.1
256,706 - LRK54_RS01145 0.46 -1.0
256,706 - LRK54_RS01145 0.46 -0.7
256,706 - LRK54_RS01145 0.46 -0.0
256,706 - LRK54_RS01145 0.46 -1.0
256,706 - LRK54_RS01145 0.46 +0.8
256,706 - LRK54_RS01145 0.46 -2.3
256,812 + LRK54_RS01145 0.56 +1.1
256,812 + LRK54_RS01145 0.56 -1.3
256,812 + LRK54_RS01145 0.56 -0.9
256,812 + LRK54_RS01145 0.56 +0.8
256,812 + LRK54_RS01145 0.56 +0.1
256,813 - LRK54_RS01145 0.56 -0.3
256,813 - LRK54_RS01145 0.56 +1.3
256,813 - LRK54_RS01145 0.56 -0.0
256,813 - LRK54_RS01145 0.56 +0.8
258,829 + -0.9
258,829 + +1.0
258,829 + +0.5
258,830 - +2.2
258,830 - +1.5
258,830 - +0.8
258,830 - +1.1
258,904 + -0.3
258,904 + +1.3
258,904 + +1.1
258,904 + +0.3
258,904 + +2.1
258,905 - -0.6
258,905 - -0.2
258,905 - -1.4
258,905 - +0.5
258,905 - +0.4
258,905 - -0.0
258,905 - +3.7
258,905 - +1.4
258,996 - LRK54_RS01160 0.18 -2.6
258,996 - LRK54_RS01160 0.18 +1.6
258,996 - LRK54_RS01160 0.18 -0.1
258,997 + LRK54_RS01160 0.18 +0.1
258,997 + LRK54_RS01160 0.18 +2.5
258,997 + LRK54_RS01160 0.18 +0.1
258,997 + LRK54_RS01160 0.18 +0.3
258,997 + LRK54_RS01160 0.18 +1.2
258,997 + LRK54_RS01160 0.18 -0.3
258,997 + LRK54_RS01160 0.18 -0.2
258,997 + LRK54_RS01160 0.18 +0.3
258,997 + LRK54_RS01160 0.18 +2.9
258,997 + LRK54_RS01160 0.18 +0.3
258,997 + LRK54_RS01160 0.18 +1.5
258,997 + LRK54_RS01160 0.18 +0.5
258,997 + LRK54_RS01160 0.18 +0.3
258,997 + LRK54_RS01160 0.18 +0.1
258,997 + LRK54_RS01160 0.18 -0.8
258,997 + LRK54_RS01160 0.18 -1.5
258,997 + LRK54_RS01160 0.18 +0.8
258,997 + LRK54_RS01160 0.18 -0.4
258,997 + LRK54_RS01160 0.18 +0.8
258,997 + LRK54_RS01160 0.18 -0.5
258,998 - LRK54_RS01160 0.18 +1.8
258,998 - LRK54_RS01160 0.18 +1.7
258,998 - LRK54_RS01160 0.18 -0.3
258,998 - LRK54_RS01160 0.18 +1.4
258,998 - LRK54_RS01160 0.18 +0.1
258,998 - LRK54_RS01160 0.18 -0.0
258,998 - LRK54_RS01160 0.18 +0.8
258,998 - LRK54_RS01160 0.18 +0.8
258,998 - LRK54_RS01160 0.18 +0.8
258,998 - LRK54_RS01160 0.18 -0.2
258,998 - LRK54_RS01160 0.18 +0.2
258,998 - LRK54_RS01160 0.18 +0.3
258,998 - LRK54_RS01160 0.18 -0.1
258,998 - LRK54_RS01160 0.18 +0.6
258,998 - LRK54_RS01160 0.18 +1.3
258,998 - LRK54_RS01160 0.18 +0.7
258,998 - LRK54_RS01160 0.18 +0.7
258,998 - LRK54_RS01160 0.18 +1.2
258,998 - LRK54_RS01160 0.18 -3.6
258,998 - LRK54_RS01160 0.18 +0.1
258,998 - LRK54_RS01160 0.18 -0.1
258,998 - LRK54_RS01160 0.18 +0.0
258,998 - LRK54_RS01160 0.18 +2.5
258,998 - LRK54_RS01160 0.18 +1.3
258,998 - LRK54_RS01160 0.18 +0.3
259,006 + LRK54_RS01160 0.19 +1.2
259,006 + LRK54_RS01160 0.19 +1.5
259,006 + +4.1
259,006 + LRK54_RS01160 0.19 +0.8
259,006 + LRK54_RS01160 0.19 -0.5
259,006 + LRK54_RS01160 0.19 +0.8
259,006 + LRK54_RS01160 0.19 -0.0
259,006 + LRK54_RS01160 0.19 +0.5
259,006 + LRK54_RS01160 0.19 +0.8
259,007 - LRK54_RS01160 0.19 +1.3
259,007 - LRK54_RS01160 0.19 -0.9
259,007 - LRK54_RS01160 0.19 +0.3
259,051 + LRK54_RS01160 0.24 +1.5
259,051 + LRK54_RS01160 0.24 +1.0
259,052 - LRK54_RS01160 0.24 +2.7
259,052 - LRK54_RS01160 0.24 -0.6
259,052 - LRK54_RS01160 0.24 +0.8
259,052 - LRK54_RS01160 0.24 +1.5
259,052 - LRK54_RS01160 0.24 -0.8
259,070 - LRK54_RS01160 0.25 +0.5
259,070 - LRK54_RS01160 0.25 +0.5
259,070 - LRK54_RS01160 0.25 +1.2
259,070 - LRK54_RS01160 0.25 +1.1
259,070 - LRK54_RS01160 0.25 +0.4
259,070 - LRK54_RS01160 0.25 -1.5
259,070 - LRK54_RS01160 0.25 -1.1
259,070 - LRK54_RS01160 0.25 +1.7
259,070 - LRK54_RS01160 0.25 -0.6

Or see this region's nucleotide sequence