Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00475 and LRK54_RS00480 are separated by 43 nucleotides LRK54_RS00480 and LRK54_RS00485 are separated by 78 nucleotides LRK54_RS00485 and LRK54_RS00490 overlap by 4 nucleotides LRK54_RS00490 and LRK54_RS00495 overlap by 4 nucleotides
LRK54_RS00475: LRK54_RS00475 - phosphate signaling complex protein PhoU, at 101,333 to 102,055
_RS00475
LRK54_RS00480: LRK54_RS00480 - quaternary ammonium compound efflux SMR transporter SugE, at 102,099 to 102,416
_RS00480
LRK54_RS00485: LRK54_RS00485 - hypothetical protein, at 102,495 to 102,764
_RS00485
LRK54_RS00490: LRK54_RS00490 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 102,761 to 103,507
_RS00490
LRK54_RS00495: LRK54_RS00495 - ribonuclease R, at 103,504 to 106,197
_RS00495
Position (kb) 102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 101.594 kb on + strand, within LRK54_RS00475 at 101.828 kb on + strand, within LRK54_RS00475 at 101.858 kb on + strand, within LRK54_RS00475 at 101.858 kb on + strand, within LRK54_RS00475 at 101.859 kb on - strand, within LRK54_RS00475 at 101.859 kb on - strand, within LRK54_RS00475 at 102.101 kb on - strand at 102.101 kb on - strand at 102.241 kb on + strand, within LRK54_RS00480 at 102.241 kb on + strand, within LRK54_RS00480 at 102.241 kb on + strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.242 kb on - strand, within LRK54_RS00480 at 102.338 kb on + strand, within LRK54_RS00480 at 102.338 kb on + strand, within LRK54_RS00480 at 102.339 kb on - strand, within LRK54_RS00480 at 102.339 kb on - strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.352 kb on + strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.353 kb on - strand, within LRK54_RS00480 at 102.401 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.403 kb on + strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.404 kb on - strand at 102.434 kb on + strand at 102.434 kb on + strand at 102.434 kb on + strand at 102.434 kb on + strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.496 kb on + strand at 102.496 kb on + strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.497 kb on - strand at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.547 kb on + strand, within LRK54_RS00485 at 102.548 kb on - strand, within LRK54_RS00485 at 102.548 kb on - strand, within LRK54_RS00485 at 102.548 kb on - strand, within LRK54_RS00485 at 102.548 kb on - strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.658 kb on + strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.659 kb on - strand, within LRK54_RS00485 at 102.733 kb on + strand, within LRK54_RS00485 at 102.733 kb on + strand, within LRK54_RS00485 at 102.734 kb on - strand, within LRK54_RS00485 at 102.955 kb on - strand, within LRK54_RS00490 at 103.563 kb on + strand at 103.563 kb on + strand at 103.563 kb on + strand at 103.564 kb on - strand at 103.564 kb on - strand at 103.564 kb on - strand at 103.564 kb on - strand at 103.564 kb on - strand at 103.701 kb on + strand at 103.702 kb on - strand at 103.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM remove 101,594 + LRK54_RS00475 0.36 -0.0 101,828 + LRK54_RS00475 0.68 -0.0 101,858 + LRK54_RS00475 0.73 +0.3 101,858 + LRK54_RS00475 0.73 +1.6 101,859 - LRK54_RS00475 0.73 +0.8 101,859 - LRK54_RS00475 0.73 +1.6 102,101 - -0.8 102,101 - -1.5 102,241 + LRK54_RS00480 0.45 -1.8 102,241 + LRK54_RS00480 0.45 -1.3 102,241 + LRK54_RS00480 0.45 -0.6 102,242 - LRK54_RS00480 0.45 -0.9 102,242 - LRK54_RS00480 0.45 -0.5 102,242 - LRK54_RS00480 0.45 -0.8 102,242 - LRK54_RS00480 0.45 -0.4 102,242 - LRK54_RS00480 0.45 +3.1 102,242 - LRK54_RS00480 0.45 +0.3 102,242 - LRK54_RS00480 0.45 -0.5 102,338 + LRK54_RS00480 0.75 +0.3 102,338 + LRK54_RS00480 0.75 +0.8 102,339 - LRK54_RS00480 0.75 +1.1 102,339 - LRK54_RS00480 0.75 +2.1 102,352 + LRK54_RS00480 0.80 +2.4 102,352 + LRK54_RS00480 0.80 -1.5 102,352 + LRK54_RS00480 0.80 -0.0 102,352 + LRK54_RS00480 0.80 +0.2 102,352 + LRK54_RS00480 0.80 -0.4 102,352 + LRK54_RS00480 0.80 -1.4 102,352 + LRK54_RS00480 0.80 +0.7 102,352 + LRK54_RS00480 0.80 +0.8 102,352 + LRK54_RS00480 0.80 +0.7 102,352 + LRK54_RS00480 0.80 +0.2 102,352 + LRK54_RS00480 0.80 -0.9 102,352 + LRK54_RS00480 0.80 +0.5 102,353 - LRK54_RS00480 0.80 -1.1 102,353 - LRK54_RS00480 0.80 -1.7 102,353 - LRK54_RS00480 0.80 +0.6 102,353 - LRK54_RS00480 0.80 +0.3 102,353 - LRK54_RS00480 0.80 -1.9 102,353 - LRK54_RS00480 0.80 -0.6 102,353 - LRK54_RS00480 0.80 +1.3 102,353 - LRK54_RS00480 0.80 +1.6 102,353 - LRK54_RS00480 0.80 -1.1 102,353 - LRK54_RS00480 0.80 -0.8 102,401 + +0.1 102,403 + +0.6 102,403 + -0.2 102,403 + -0.0 102,403 + -1.8 102,403 + -0.8 102,403 + +0.8 102,403 + -2.1 102,403 + -0.3 102,403 + -1.0 102,403 + +0.6 102,403 + -0.9 102,403 + -1.5 102,403 + -0.1 102,403 + +1.1 102,403 + -0.6 102,403 + +0.8 102,403 + +0.1 102,403 + -0.4 102,403 + +2.1 102,403 + -0.9 102,403 + +0.8 102,403 + -0.5 102,403 + -1.1 102,403 + +1.1 102,403 + +0.6 102,403 + -0.7 102,403 + -0.4 102,403 + +0.1 102,403 + +1.4 102,404 - -2.0 102,404 - -1.4 102,404 - +1.1 102,404 - -1.8 102,404 - -0.2 102,404 - -0.7 102,404 - -2.0 102,404 - -1.5 102,404 - +1.6 102,404 - +0.1 102,404 - -0.9 102,404 - -0.4 102,404 - +0.3 102,404 - +0.3 102,404 - -1.7 102,404 - -1.4 102,404 - -1.6 102,404 - +3.1 102,404 - -0.2 102,404 - -2.3 102,404 - -1.5 102,434 + -2.4 102,434 + -0.3 102,434 + +2.1 102,434 + -1.3 102,435 - -0.9 102,435 - -2.7 102,435 - -0.6 102,435 - -2.1 102,435 - -1.3 102,435 - -0.2 102,435 - -1.6 102,435 - -1.0 102,496 + -0.7 102,496 + -1.4 102,497 - -2.4 102,497 - +0.8 102,497 - -1.7 102,497 - +0.3 102,497 - -1.1 102,497 - -0.5 102,497 - +0.1 102,497 - +0.4 102,547 + LRK54_RS00485 0.19 +0.4 102,547 + LRK54_RS00485 0.19 -1.2 102,547 + LRK54_RS00485 0.19 +0.3 102,547 + LRK54_RS00485 0.19 -0.4 102,547 + LRK54_RS00485 0.19 -1.0 102,547 + LRK54_RS00485 0.19 -0.9 102,547 + LRK54_RS00485 0.19 -0.8 102,547 + LRK54_RS00485 0.19 +0.1 102,547 + LRK54_RS00485 0.19 -0.8 102,547 + LRK54_RS00485 0.19 -0.2 102,547 + LRK54_RS00485 0.19 -0.3 102,548 - LRK54_RS00485 0.20 -1.6 102,548 - LRK54_RS00485 0.20 -0.0 102,548 - LRK54_RS00485 0.20 -1.1 102,548 - LRK54_RS00485 0.20 +2.1 102,658 + LRK54_RS00485 0.60 -1.5 102,658 + LRK54_RS00485 0.60 +0.1 102,658 + LRK54_RS00485 0.60 -1.4 102,658 + LRK54_RS00485 0.60 -1.3 102,658 + LRK54_RS00485 0.60 +1.4 102,658 + LRK54_RS00485 0.60 +1.6 102,658 + LRK54_RS00485 0.60 +0.8 102,658 + LRK54_RS00485 0.60 -1.4 102,658 + LRK54_RS00485 0.60 -0.2 102,659 - LRK54_RS00485 0.61 +2.1 102,659 - LRK54_RS00485 0.61 -1.9 102,659 - LRK54_RS00485 0.61 -0.9 102,659 - LRK54_RS00485 0.61 -2.4 102,659 - LRK54_RS00485 0.61 -2.1 102,659 - LRK54_RS00485 0.61 +0.3 102,659 - LRK54_RS00485 0.61 +0.4 102,733 + LRK54_RS00485 0.88 -0.6 102,733 + LRK54_RS00485 0.88 -2.9 102,734 - LRK54_RS00485 0.89 -2.7 102,955 - LRK54_RS00490 0.26 -2.3 103,563 + -2.4 103,563 + +0.1 103,563 + -1.6 103,564 - -1.1 103,564 - -2.6 103,564 - -1.3 103,564 - -0.4 103,564 - -0.3 103,701 + +1.1 103,702 - -0.5 103,702 - -0.4
Or see this region's nucleotide sequence