Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3620

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3618 and Ga0059261_3619 are separated by 89 nucleotidesGa0059261_3619 and Ga0059261_3620 overlap by 4 nucleotidesGa0059261_3620 and Ga0059261_3621 are separated by 59 nucleotides Ga0059261_3618: Ga0059261_3618 - tRNA, at 3,737,595 to 3,737,669 _3618 Ga0059261_3619: Ga0059261_3619 - Predicted sugar kinase, at 3,737,759 to 3,738,532 _3619 Ga0059261_3620: Ga0059261_3620 - molybdenum cofactor biosynthesis protein A, bacterial, at 3,738,529 to 3,739,527 _3620 Ga0059261_3621: Ga0059261_3621 - FOG: EAL domain, at 3,739,587 to 3,741,563 _3621 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -1 0 1at 3738.819 kb on - strand, within Ga0059261_3620at 3738.819 kb on - strand, within Ga0059261_3620at 3738.819 kb on - strand, within Ga0059261_3620at 3739.200 kb on - strand, within Ga0059261_3620at 3739.200 kb on - strandat 3739.434 kb on - strandat 3739.434 kb on - strandat 3739.469 kb on - strandat 3739.533 kb on - strandat 3739.533 kb on - strandat 3739.541 kb on - strandat 3739.541 kb on - strandat 3739.541 kb on - strandat 3739.541 kb on - strandat 3739.574 kb on + strandat 3739.825 kb on + strand, within Ga0059261_3621at 3739.826 kb on - strand, within Ga0059261_3621at 3739.906 kb on - strand, within Ga0059261_3621at 3739.906 kb on - strand, within Ga0059261_3621at 3740.338 kb on + strand, within Ga0059261_3621at 3740.339 kb on - strand, within Ga0059261_3621at 3740.469 kb on + strand, within Ga0059261_3621at 3740.470 kb on - strand, within Ga0059261_3621at 3740.470 kb on - strand, within Ga0059261_3621at 3740.470 kb on - strand, within Ga0059261_3621at 3740.470 kb on - strand, within Ga0059261_3621

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,738,819 - Ga0059261_3620 0.29 -0.0
3,738,819 - Ga0059261_3620 0.29 -1.4
3,738,819 - Ga0059261_3620 0.29 -0.6
3,739,200 - Ga0059261_3620 0.67 -0.4
3,739,200 - +0.9
3,739,434 - -0.6
3,739,434 - +0.2
3,739,469 - -0.7
3,739,533 - -0.5
3,739,533 - -0.7
3,739,541 - +0.2
3,739,541 - -0.6
3,739,541 - +0.9
3,739,541 - +0.9
3,739,574 + -0.5
3,739,825 + Ga0059261_3621 0.12 +0.5
3,739,826 - Ga0059261_3621 0.12 +0.3
3,739,906 - Ga0059261_3621 0.16 -0.1
3,739,906 - Ga0059261_3621 0.16 -0.4
3,740,338 + Ga0059261_3621 0.38 -1.0
3,740,339 - Ga0059261_3621 0.38 +0.3
3,740,469 + Ga0059261_3621 0.45 +0.1
3,740,470 - Ga0059261_3621 0.45 +0.3
3,740,470 - Ga0059261_3621 0.45 +0.1
3,740,470 - Ga0059261_3621 0.45 +0.4
3,740,470 - Ga0059261_3621 0.45 -0.2

Or see this region's nucleotide sequence