Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3119

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3118 and Ga0059261_3119 are separated by 6 nucleotidesGa0059261_3119 and Ga0059261_3120 are separated by 1 nucleotides Ga0059261_3118: Ga0059261_3118 - Glycosyltransferase, at 3,256,557 to 3,257,612 _3118 Ga0059261_3119: Ga0059261_3119 - asparagine synthase (glutamine-hydrolyzing), at 3,257,619 to 3,259,469 _3119 Ga0059261_3120: Ga0059261_3120 - Glycosyltransferase, at 3,259,471 to 3,260,607 _3120 Position (kb) 3257 3258 3259 3260Strain fitness (log2 ratio) -2 -1 0 1at 3257.943 kb on + strand, within Ga0059261_3119at 3258.027 kb on + strand, within Ga0059261_3119at 3258.183 kb on + strand, within Ga0059261_3119at 3258.303 kb on + strandat 3258.747 kb on + strand, within Ga0059261_3119at 3258.747 kb on + strand, within Ga0059261_3119at 3258.747 kb on + strand, within Ga0059261_3119at 3258.747 kb on + strand, within Ga0059261_3119at 3258.747 kb on + strand, within Ga0059261_3119at 3258.943 kb on + strand, within Ga0059261_3119at 3258.943 kb on + strand, within Ga0059261_3119at 3258.943 kb on + strand, within Ga0059261_3119at 3258.981 kb on + strand, within Ga0059261_3119at 3259.047 kb on + strand, within Ga0059261_3119at 3259.047 kb on + strandat 3259.047 kb on + strand, within Ga0059261_3119at 3259.452 kb on + strandat 3259.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,257,943 + Ga0059261_3119 0.18 -0.2
3,258,027 + Ga0059261_3119 0.22 +0.7
3,258,183 + Ga0059261_3119 0.30 -1.3
3,258,303 + +0.0
3,258,747 + Ga0059261_3119 0.61 -2.2
3,258,747 + Ga0059261_3119 0.61 -1.1
3,258,747 + Ga0059261_3119 0.61 -2.2
3,258,747 + Ga0059261_3119 0.61 +0.4
3,258,747 + Ga0059261_3119 0.61 -0.7
3,258,943 + Ga0059261_3119 0.72 -0.8
3,258,943 + Ga0059261_3119 0.72 -0.8
3,258,943 + Ga0059261_3119 0.72 -0.3
3,258,981 + Ga0059261_3119 0.74 -0.8
3,259,047 + Ga0059261_3119 0.77 -2.4
3,259,047 + +0.4
3,259,047 + Ga0059261_3119 0.77 +0.8
3,259,452 + +1.0
3,259,452 + +1.0

Or see this region's nucleotide sequence