Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3103

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3102 and Ga0059261_3103 overlap by 4 nucleotidesGa0059261_3103 and Ga0059261_3104 are separated by 3 nucleotides Ga0059261_3102: Ga0059261_3102 - UDP-N-Acetylglucosamine 2-epimerase (EC 5.1.3.14), at 3,239,377 to 3,240,531 _3102 Ga0059261_3103: Ga0059261_3103 - Glycosyltransferase, at 3,240,528 to 3,241,754 _3103 Ga0059261_3104: Ga0059261_3104 - Uncharacterized protein conserved in bacteria, at 3,241,758 to 3,243,398 _3104 Position (kb) 3240 3241 3242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3239.681 kb on + strandat 3239.773 kb on + strand, within Ga0059261_3102at 3239.941 kb on - strand, within Ga0059261_3102at 3240.189 kb on - strand, within Ga0059261_3102at 3240.455 kb on + strandat 3240.455 kb on + strandat 3240.455 kb on + strandat 3240.455 kb on + strandat 3240.456 kb on - strandat 3240.583 kb on + strandat 3240.584 kb on - strandat 3240.825 kb on + strand, within Ga0059261_3103at 3240.825 kb on + strand, within Ga0059261_3103at 3240.981 kb on - strand, within Ga0059261_3103at 3241.252 kb on + strand, within Ga0059261_3103at 3241.253 kb on - strand, within Ga0059261_3103at 3241.492 kb on + strand, within Ga0059261_3103at 3241.493 kb on - strand, within Ga0059261_3103at 3241.493 kb on - strandat 3241.493 kb on - strand, within Ga0059261_3103at 3241.493 kb on - strandat 3241.493 kb on - strand, within Ga0059261_3103at 3241.534 kb on + strand, within Ga0059261_3103at 3241.534 kb on + strand, within Ga0059261_3103at 3241.534 kb on + strand, within Ga0059261_3103at 3241.534 kb on + strandat 3241.535 kb on - strand, within Ga0059261_3103at 3241.535 kb on - strand, within Ga0059261_3103at 3241.535 kb on - strand, within Ga0059261_3103at 3242.359 kb on + strand, within Ga0059261_3104at 3242.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,239,681 + +1.0
3,239,773 + Ga0059261_3102 0.34 -0.7
3,239,941 - Ga0059261_3102 0.49 -1.2
3,240,189 - Ga0059261_3102 0.70 -1.3
3,240,455 + -0.4
3,240,455 + -1.8
3,240,455 + +0.7
3,240,455 + +1.3
3,240,456 - -0.6
3,240,583 + -0.4
3,240,584 - +0.0
3,240,825 + Ga0059261_3103 0.24 +1.0
3,240,825 + Ga0059261_3103 0.24 -1.8
3,240,981 - Ga0059261_3103 0.37 -3.2
3,241,252 + Ga0059261_3103 0.59 -0.7
3,241,253 - Ga0059261_3103 0.59 -1.0
3,241,492 + Ga0059261_3103 0.79 -0.4
3,241,493 - Ga0059261_3103 0.79 +1.0
3,241,493 - +1.0
3,241,493 - Ga0059261_3103 0.79 -1.1
3,241,493 - -0.3
3,241,493 - Ga0059261_3103 0.79 -0.6
3,241,534 + Ga0059261_3103 0.82 -0.7
3,241,534 + Ga0059261_3103 0.82 +0.3
3,241,534 + Ga0059261_3103 0.82 +2.6
3,241,534 + +1.0
3,241,535 - Ga0059261_3103 0.82 -1.1
3,241,535 - Ga0059261_3103 0.82 +0.3
3,241,535 - Ga0059261_3103 0.82 -0.7
3,242,359 + Ga0059261_3104 0.37 +0.4
3,242,707 + -1.3

Or see this region's nucleotide sequence