Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3064

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3063 and Ga0059261_3064 are separated by 440 nucleotidesGa0059261_3064 and Ga0059261_3065 are separated by 330 nucleotides Ga0059261_3063: Ga0059261_3063 - hypothetical protein, at 3,201,391 to 3,202,062 _3063 Ga0059261_3064: Ga0059261_3064 - hypothetical protein, at 3,202,503 to 3,202,862 _3064 Ga0059261_3065: Ga0059261_3065 - Type IV secretory pathway, VirD2 components (relaxase), at 3,203,193 to 3,205,175 _3065 Position (kb) 3202 3203Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3201.521 kb on + strand, within Ga0059261_3063at 3201.521 kb on + strand, within Ga0059261_3063at 3201.521 kb on + strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.522 kb on - strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.526 kb on + strand, within Ga0059261_3063at 3201.527 kb on - strand, within Ga0059261_3063at 3201.527 kb on - strand, within Ga0059261_3063at 3201.527 kb on - strand, within Ga0059261_3063at 3201.527 kb on - strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.665 kb on + strand, within Ga0059261_3063at 3201.666 kb on - strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.719 kb on + strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.720 kb on - strand, within Ga0059261_3063at 3201.722 kb on + strand, within Ga0059261_3063at 3201.722 kb on + strand, within Ga0059261_3063at 3201.722 kb on + strand, within Ga0059261_3063at 3201.723 kb on - strand, within Ga0059261_3063at 3201.723 kb on - strand, within Ga0059261_3063at 3201.723 kb on - strand, within Ga0059261_3063at 3201.723 kb on - strand, within Ga0059261_3063at 3201.723 kb on - strand, within Ga0059261_3063at 3201.765 kb on + strand, within Ga0059261_3063at 3201.765 kb on + strand, within Ga0059261_3063at 3201.765 kb on + strand, within Ga0059261_3063at 3201.766 kb on - strand, within Ga0059261_3063at 3201.766 kb on - strand, within Ga0059261_3063at 3201.766 kb on - strand, within Ga0059261_3063at 3201.766 kb on - strand, within Ga0059261_3063at 3201.767 kb on + strand, within Ga0059261_3063at 3201.767 kb on + strand, within Ga0059261_3063at 3201.767 kb on + strand, within Ga0059261_3063at 3201.767 kb on + strand, within Ga0059261_3063at 3201.767 kb on + strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.768 kb on - strand, within Ga0059261_3063at 3201.987 kb on + strand, within Ga0059261_3063at 3202.054 kb on + strandat 3202.054 kb on + strandat 3202.054 kb on + strandat 3202.055 kb on - strandat 3202.055 kb on - strandat 3202.055 kb on - strandat 3202.055 kb on - strandat 3202.055 kb on - strandat 3202.092 kb on - strandat 3202.101 kb on + strandat 3202.102 kb on - strandat 3202.102 kb on - strandat 3202.197 kb on + strandat 3202.198 kb on - strandat 3202.198 kb on - strandat 3202.198 kb on - strandat 3202.246 kb on + strandat 3202.247 kb on - strandat 3202.363 kb on + strandat 3202.616 kb on + strand, within Ga0059261_3064at 3202.680 kb on + strand, within Ga0059261_3064at 3202.681 kb on - strand, within Ga0059261_3064at 3202.681 kb on - strand, within Ga0059261_3064at 3202.681 kb on - strand, within Ga0059261_3064at 3202.989 kb on + strandat 3202.989 kb on + strandat 3202.999 kb on + strandat 3202.999 kb on + strandat 3203.000 kb on - strandat 3203.171 kb on + strandat 3203.171 kb on + strandat 3203.171 kb on + strandat 3203.171 kb on + strandat 3203.172 kb on - strandat 3203.172 kb on - strandat 3203.172 kb on - strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.175 kb on + strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.176 kb on - strandat 3203.265 kb on + strandat 3203.265 kb on + strandat 3203.266 kb on - strandat 3203.266 kb on - strandat 3203.266 kb on - strandat 3203.413 kb on - strand, within Ga0059261_3065at 3203.496 kb on + strand, within Ga0059261_3065at 3203.496 kb on + strand, within Ga0059261_3065at 3203.497 kb on - strandat 3203.564 kb on - strand, within Ga0059261_3065at 3203.564 kb on - strand, within Ga0059261_3065at 3203.564 kb on - strand, within Ga0059261_3065at 3203.564 kb on - strand, within Ga0059261_3065at 3203.564 kb on - strand, within Ga0059261_3065at 3203.564 kb on - strand, within Ga0059261_3065at 3203.573 kb on + strandat 3203.574 kb on - strand, within Ga0059261_3065at 3203.574 kb on - strand, within Ga0059261_3065at 3203.649 kb on + strand, within Ga0059261_3065at 3203.649 kb on + strand, within Ga0059261_3065at 3203.649 kb on + strand, within Ga0059261_3065at 3203.650 kb on - strand, within Ga0059261_3065at 3203.650 kb on - strand, within Ga0059261_3065at 3203.650 kb on - strand, within Ga0059261_3065at 3203.765 kb on + strand, within Ga0059261_3065at 3203.820 kb on + strand, within Ga0059261_3065at 3203.821 kb on - strand, within Ga0059261_3065at 3203.821 kb on - strand, within Ga0059261_3065at 3203.821 kb on - strand, within Ga0059261_3065

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,201,521 + Ga0059261_3063 0.19 +0.2
3,201,521 + Ga0059261_3063 0.19 +1.0
3,201,521 + Ga0059261_3063 0.19 +0.1
3,201,522 - Ga0059261_3063 0.19 +0.0
3,201,522 - Ga0059261_3063 0.19 -0.2
3,201,522 - Ga0059261_3063 0.19 -0.1
3,201,522 - Ga0059261_3063 0.19 +0.4
3,201,522 - Ga0059261_3063 0.19 +1.0
3,201,522 - Ga0059261_3063 0.19 -0.2
3,201,526 + Ga0059261_3063 0.20 -0.4
3,201,526 + Ga0059261_3063 0.20 -0.4
3,201,526 + Ga0059261_3063 0.20 +0.2
3,201,526 + Ga0059261_3063 0.20 +0.2
3,201,526 + Ga0059261_3063 0.20 -0.3
3,201,526 + Ga0059261_3063 0.20 -0.5
3,201,527 - Ga0059261_3063 0.20 +0.2
3,201,527 - Ga0059261_3063 0.20 -0.3
3,201,527 - Ga0059261_3063 0.20 -0.1
3,201,527 - Ga0059261_3063 0.20 +0.5
3,201,665 + Ga0059261_3063 0.41 +1.2
3,201,665 + Ga0059261_3063 0.41 +0.0
3,201,665 + Ga0059261_3063 0.41 -0.2
3,201,665 + Ga0059261_3063 0.41 +0.8
3,201,665 + Ga0059261_3063 0.41 +0.1
3,201,665 + Ga0059261_3063 0.41 +0.1
3,201,666 - Ga0059261_3063 0.41 -0.4
3,201,719 + Ga0059261_3063 0.49 -0.2
3,201,719 + Ga0059261_3063 0.49 +0.2
3,201,719 + Ga0059261_3063 0.49 -0.5
3,201,719 + Ga0059261_3063 0.49 +0.6
3,201,719 + Ga0059261_3063 0.49 +0.1
3,201,719 + Ga0059261_3063 0.49 +0.0
3,201,719 + Ga0059261_3063 0.49 +0.0
3,201,719 + Ga0059261_3063 0.49 -0.2
3,201,719 + Ga0059261_3063 0.49 +0.1
3,201,719 + Ga0059261_3063 0.49 +0.4
3,201,719 + Ga0059261_3063 0.49 +0.1
3,201,719 + Ga0059261_3063 0.49 -0.8
3,201,719 + Ga0059261_3063 0.49 -0.5
3,201,719 + Ga0059261_3063 0.49 -0.7
3,201,720 - Ga0059261_3063 0.49 +1.2
3,201,720 - Ga0059261_3063 0.49 +1.0
3,201,720 - Ga0059261_3063 0.49 -0.6
3,201,720 - Ga0059261_3063 0.49 +0.8
3,201,720 - Ga0059261_3063 0.49 -0.6
3,201,720 - Ga0059261_3063 0.49 -0.4
3,201,720 - Ga0059261_3063 0.49 +0.3
3,201,720 - Ga0059261_3063 0.49 -1.3
3,201,720 - Ga0059261_3063 0.49 -0.3
3,201,720 - Ga0059261_3063 0.49 +1.4
3,201,720 - Ga0059261_3063 0.49 +1.4
3,201,720 - Ga0059261_3063 0.49 +0.6
3,201,720 - Ga0059261_3063 0.49 +0.1
3,201,720 - Ga0059261_3063 0.49 -1.2
3,201,720 - Ga0059261_3063 0.49 +0.7
3,201,722 + Ga0059261_3063 0.49 +0.3
3,201,722 + Ga0059261_3063 0.49 +1.3
3,201,722 + Ga0059261_3063 0.49 -0.5
3,201,723 - Ga0059261_3063 0.49 -0.9
3,201,723 - Ga0059261_3063 0.49 +0.6
3,201,723 - Ga0059261_3063 0.49 -0.7
3,201,723 - Ga0059261_3063 0.49 +0.2
3,201,723 - Ga0059261_3063 0.49 +0.1
3,201,765 + Ga0059261_3063 0.56 +3.0
3,201,765 + Ga0059261_3063 0.56 +1.3
3,201,765 + Ga0059261_3063 0.56 +0.2
3,201,766 - Ga0059261_3063 0.56 -0.7
3,201,766 - Ga0059261_3063 0.56 +0.3
3,201,766 - Ga0059261_3063 0.56 +0.3
3,201,766 - Ga0059261_3063 0.56 +0.3
3,201,767 + Ga0059261_3063 0.56 -0.9
3,201,767 + Ga0059261_3063 0.56 -0.2
3,201,767 + Ga0059261_3063 0.56 +0.7
3,201,767 + Ga0059261_3063 0.56 -0.2
3,201,767 + Ga0059261_3063 0.56 -0.3
3,201,768 - Ga0059261_3063 0.56 -1.0
3,201,768 - Ga0059261_3063 0.56 +0.9
3,201,768 - Ga0059261_3063 0.56 +0.0
3,201,768 - Ga0059261_3063 0.56 +0.1
3,201,768 - Ga0059261_3063 0.56 +0.5
3,201,768 - Ga0059261_3063 0.56 +0.0
3,201,768 - Ga0059261_3063 0.56 -0.3
3,201,768 - Ga0059261_3063 0.56 +0.3
3,201,768 - Ga0059261_3063 0.56 +0.3
3,201,768 - Ga0059261_3063 0.56 -0.2
3,201,987 + Ga0059261_3063 0.89 -0.8
3,202,054 + -0.3
3,202,054 + -1.7
3,202,054 + +0.8
3,202,055 - +1.3
3,202,055 - -0.6
3,202,055 - -0.3
3,202,055 - +1.2
3,202,055 - +0.5
3,202,092 - -2.1
3,202,101 + +0.2
3,202,102 - -0.8
3,202,102 - +0.2
3,202,197 + -0.3
3,202,198 - -0.3
3,202,198 - -0.4
3,202,198 - +0.0
3,202,246 + +0.4
3,202,247 - +0.7
3,202,363 + +0.4
3,202,616 + Ga0059261_3064 0.31 -0.3
3,202,680 + Ga0059261_3064 0.49 -0.4
3,202,681 - Ga0059261_3064 0.49 +0.2
3,202,681 - Ga0059261_3064 0.49 -0.6
3,202,681 - Ga0059261_3064 0.49 -1.0
3,202,989 + +0.0
3,202,989 + -0.1
3,202,999 + -0.2
3,202,999 + -0.2
3,203,000 - +0.1
3,203,171 + +0.2
3,203,171 + +1.3
3,203,171 + +0.1
3,203,171 + +0.4
3,203,172 - -0.7
3,203,172 - -0.4
3,203,172 - -0.1
3,203,175 + +0.5
3,203,175 + +1.7
3,203,175 + -0.1
3,203,175 + +0.4
3,203,175 + +0.3
3,203,175 + +2.0
3,203,175 + -0.0
3,203,176 - +0.0
3,203,176 - -1.2
3,203,176 - +0.0
3,203,176 - -0.7
3,203,176 - -0.7
3,203,176 - +0.4
3,203,176 - +0.2
3,203,265 + -0.6
3,203,265 + +1.0
3,203,266 - +0.3
3,203,266 - +0.4
3,203,266 - -0.7
3,203,413 - Ga0059261_3065 0.11 -0.3
3,203,496 + Ga0059261_3065 0.15 +0.4
3,203,496 + Ga0059261_3065 0.15 -0.4
3,203,497 - +0.4
3,203,564 - Ga0059261_3065 0.19 -0.5
3,203,564 - Ga0059261_3065 0.19 +0.0
3,203,564 - Ga0059261_3065 0.19 +0.7
3,203,564 - Ga0059261_3065 0.19 -1.6
3,203,564 - Ga0059261_3065 0.19 +0.8
3,203,564 - Ga0059261_3065 0.19 +1.5
3,203,573 + +0.0
3,203,574 - Ga0059261_3065 0.19 +0.7
3,203,574 - Ga0059261_3065 0.19 +0.0
3,203,649 + Ga0059261_3065 0.23 +0.5
3,203,649 + Ga0059261_3065 0.23 -0.2
3,203,649 + Ga0059261_3065 0.23 +0.2
3,203,650 - Ga0059261_3065 0.23 +0.1
3,203,650 - Ga0059261_3065 0.23 +1.0
3,203,650 - Ga0059261_3065 0.23 +1.0
3,203,765 + Ga0059261_3065 0.29 -0.1
3,203,820 + Ga0059261_3065 0.32 -0.1
3,203,821 - Ga0059261_3065 0.32 -0.6
3,203,821 - Ga0059261_3065 0.32 +0.3
3,203,821 - Ga0059261_3065 0.32 +0.7

Or see this region's nucleotide sequence