Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1846

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1844 and Ga0059261_1845 are separated by 79 nucleotidesGa0059261_1845 and Ga0059261_1846 are separated by 243 nucleotidesGa0059261_1846 and Ga0059261_1847 are separated by 61 nucleotidesGa0059261_1847 and Ga0059261_1848 are separated by 103 nucleotidesGa0059261_1848 and Ga0059261_1849 are separated by 138 nucleotides Ga0059261_1844: Ga0059261_1844 - O-6-methylguanine DNA methyltransferase, at 1,953,193 to 1,953,672 _1844 Ga0059261_1845: Ga0059261_1845 - Uncharacterized protein conserved in bacteria, at 1,953,752 to 1,954,399 _1845 Ga0059261_1846: Ga0059261_1846 - Xaa-Pro aminopeptidase, at 1,954,643 to 1,956,445 _1846 Ga0059261_1847: Ga0059261_1847 - hypothetical protein, at 1,956,507 to 1,956,632 _1847 Ga0059261_1848: Ga0059261_1848 - tRNA, at 1,956,736 to 1,956,810 _1848 Ga0059261_1849: Ga0059261_1849 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,956,949 to 1,958,364 _1849 Position (kb) 1954 1955 1956 1957Strain fitness (log2 ratio) -2 -1 0 1 2at 1953.690 kb on + strandat 1953.691 kb on - strandat 1953.691 kb on - strandat 1953.691 kb on - strandat 1953.705 kb on - strandat 1953.705 kb on - strandat 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.940 kb on + strand, within Ga0059261_1845at 1953.941 kb on - strand, within Ga0059261_1845at 1953.941 kb on - strand, within Ga0059261_1845at 1953.941 kb on - strand, within Ga0059261_1845at 1953.941 kb on - strand, within Ga0059261_1845at 1953.941 kb on - strand, within Ga0059261_1845at 1953.942 kb on + strandat 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.942 kb on + strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.943 kb on - strand, within Ga0059261_1845at 1953.961 kb on - strand, within Ga0059261_1845at 1953.973 kb on + strand, within Ga0059261_1845at 1953.973 kb on + strand, within Ga0059261_1845at 1953.973 kb on + strand, within Ga0059261_1845at 1953.973 kb on + strand, within Ga0059261_1845at 1953.973 kb on + strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1953.974 kb on - strand, within Ga0059261_1845at 1954.038 kb on + strand, within Ga0059261_1845at 1954.038 kb on + strand, within Ga0059261_1845at 1954.038 kb on + strand, within Ga0059261_1845at 1954.039 kb on - strand, within Ga0059261_1845at 1954.066 kb on - strand, within Ga0059261_1845at 1954.158 kb on + strand, within Ga0059261_1845at 1954.159 kb on - strand, within Ga0059261_1845at 1954.546 kb on - strandat 1954.598 kb on + strandat 1954.599 kb on - strandat 1954.599 kb on - strandat 1954.599 kb on - strandat 1954.599 kb on - strandat 1954.652 kb on + strandat 1954.652 kb on + strandat 1954.653 kb on - strandat 1954.653 kb on - strandat 1954.735 kb on + strandat 1954.735 kb on + strandat 1954.736 kb on - strandat 1954.736 kb on - strandat 1954.736 kb on - strandat 1954.736 kb on - strandat 1954.736 kb on - strandat 1954.737 kb on - strandat 1954.745 kb on + strandat 1954.745 kb on + strandat 1954.745 kb on + strandat 1954.746 kb on - strandat 1954.757 kb on + strandat 1954.853 kb on + strand, within Ga0059261_1846at 1954.853 kb on + strand, within Ga0059261_1846at 1954.855 kb on + strand, within Ga0059261_1846at 1954.855 kb on + strand, within Ga0059261_1846at 1954.855 kb on + strandat 1954.855 kb on + strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strandat 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.856 kb on - strand, within Ga0059261_1846at 1954.898 kb on + strand, within Ga0059261_1846at 1954.898 kb on + strand, within Ga0059261_1846at 1954.898 kb on + strandat 1954.898 kb on + strand, within Ga0059261_1846at 1954.899 kb on - strand, within Ga0059261_1846at 1954.899 kb on - strandat 1954.899 kb on - strand, within Ga0059261_1846at 1954.899 kb on - strand, within Ga0059261_1846at 1954.899 kb on - strand, within Ga0059261_1846at 1954.917 kb on + strand, within Ga0059261_1846at 1954.917 kb on + strandat 1954.917 kb on + strand, within Ga0059261_1846at 1954.918 kb on - strand, within Ga0059261_1846at 1954.918 kb on - strand, within Ga0059261_1846at 1954.970 kb on + strand, within Ga0059261_1846at 1954.970 kb on + strand, within Ga0059261_1846at 1955.289 kb on - strand, within Ga0059261_1846at 1955.289 kb on - strand, within Ga0059261_1846at 1955.768 kb on + strandat 1955.768 kb on + strand, within Ga0059261_1846at 1955.768 kb on + strand, within Ga0059261_1846at 1955.768 kb on + strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.816 kb on + strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.840 kb on + strandat 1956.029 kb on + strand, within Ga0059261_1846at 1956.029 kb on + strand, within Ga0059261_1846at 1956.062 kb on + strand, within Ga0059261_1846at 1956.062 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strandat 1956.173 kb on + strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strandat 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.216 kb on + strand, within Ga0059261_1846at 1956.216 kb on + strand, within Ga0059261_1846at 1956.217 kb on - strand, within Ga0059261_1846at 1956.350 kb on + strandat 1956.350 kb on + strandat 1956.351 kb on - strandat 1956.443 kb on + strandat 1956.443 kb on + strandat 1956.443 kb on + strandat 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.645 kb on + strandat 1956.646 kb on - strandat 1956.944 kb on + strandat 1956.945 kb on - strandat 1956.945 kb on - strandat 1956.945 kb on - strandat 1957.193 kb on + strand, within Ga0059261_1849at 1957.326 kb on + strand, within Ga0059261_1849at 1957.431 kb on - strand, within Ga0059261_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,953,690 + +1.5
1,953,691 - +0.7
1,953,691 - +0.4
1,953,691 - -0.4
1,953,705 - +0.2
1,953,705 - -0.5
1,953,940 + Ga0059261_1845 0.29 -0.3
1,953,940 + Ga0059261_1845 0.29 +0.1
1,953,940 + Ga0059261_1845 0.29 +0.1
1,953,940 + Ga0059261_1845 0.29 -0.4
1,953,940 + Ga0059261_1845 0.29 -0.2
1,953,940 + Ga0059261_1845 0.29 -0.7
1,953,940 + Ga0059261_1845 0.29 +1.7
1,953,940 + Ga0059261_1845 0.29 +0.4
1,953,940 + Ga0059261_1845 0.29 +1.1
1,953,940 + Ga0059261_1845 0.29 -0.6
1,953,940 + Ga0059261_1845 0.29 -1.0
1,953,941 - Ga0059261_1845 0.29 -0.1
1,953,941 - Ga0059261_1845 0.29 -1.8
1,953,941 - Ga0059261_1845 0.29 -1.0
1,953,941 - Ga0059261_1845 0.29 +0.2
1,953,941 - Ga0059261_1845 0.29 -0.1
1,953,942 + +1.7
1,953,942 + Ga0059261_1845 0.29 -0.4
1,953,942 + Ga0059261_1845 0.29 +0.4
1,953,942 + Ga0059261_1845 0.29 +0.7
1,953,942 + Ga0059261_1845 0.29 +0.4
1,953,942 + Ga0059261_1845 0.29 -0.4
1,953,942 + Ga0059261_1845 0.29 -0.2
1,953,942 + Ga0059261_1845 0.29 +0.1
1,953,942 + Ga0059261_1845 0.29 -0.4
1,953,942 + Ga0059261_1845 0.29 -0.1
1,953,942 + Ga0059261_1845 0.29 -0.0
1,953,942 + Ga0059261_1845 0.29 -0.2
1,953,942 + Ga0059261_1845 0.29 -1.0
1,953,942 + Ga0059261_1845 0.29 +0.7
1,953,943 - Ga0059261_1845 0.29 -0.3
1,953,943 - Ga0059261_1845 0.29 +0.5
1,953,943 - Ga0059261_1845 0.29 -0.1
1,953,943 - Ga0059261_1845 0.29 +1.0
1,953,943 - Ga0059261_1845 0.29 -1.0
1,953,943 - Ga0059261_1845 0.29 +1.5
1,953,943 - Ga0059261_1845 0.29 +0.4
1,953,943 - Ga0059261_1845 0.29 -1.2
1,953,943 - Ga0059261_1845 0.29 +0.3
1,953,943 - Ga0059261_1845 0.29 +0.5
1,953,961 - Ga0059261_1845 0.32 -0.2
1,953,973 + Ga0059261_1845 0.34 -0.2
1,953,973 + Ga0059261_1845 0.34 +1.0
1,953,973 + Ga0059261_1845 0.34 +0.5
1,953,973 + Ga0059261_1845 0.34 +1.1
1,953,973 + Ga0059261_1845 0.34 +0.6
1,953,974 - Ga0059261_1845 0.34 -0.3
1,953,974 - Ga0059261_1845 0.34 -0.4
1,953,974 - Ga0059261_1845 0.34 +0.0
1,953,974 - Ga0059261_1845 0.34 +0.5
1,953,974 - Ga0059261_1845 0.34 +0.3
1,953,974 - Ga0059261_1845 0.34 +0.2
1,954,038 + Ga0059261_1845 0.44 -0.8
1,954,038 + Ga0059261_1845 0.44 +0.1
1,954,038 + Ga0059261_1845 0.44 +0.2
1,954,039 - Ga0059261_1845 0.44 +0.6
1,954,066 - Ga0059261_1845 0.48 -0.9
1,954,158 + Ga0059261_1845 0.63 -0.1
1,954,159 - Ga0059261_1845 0.63 +0.1
1,954,546 - -1.2
1,954,598 + -0.2
1,954,599 - +0.5
1,954,599 - -1.6
1,954,599 - -1.5
1,954,599 - -0.1
1,954,652 + +0.6
1,954,652 + -0.9
1,954,653 - +2.1
1,954,653 - -0.5
1,954,735 + -2.7
1,954,735 + -0.9
1,954,736 - -1.6
1,954,736 - -0.9
1,954,736 - -0.9
1,954,736 - -1.2
1,954,736 - -0.5
1,954,737 - -2.2
1,954,745 + -0.5
1,954,745 + -0.6
1,954,745 + -1.0
1,954,746 - -0.1
1,954,757 + -1.4
1,954,853 + Ga0059261_1846 0.12 +0.8
1,954,853 + Ga0059261_1846 0.12 -1.6
1,954,855 + Ga0059261_1846 0.12 -1.7
1,954,855 + Ga0059261_1846 0.12 -0.3
1,954,855 + -0.9
1,954,855 + Ga0059261_1846 0.12 -1.9
1,954,856 - Ga0059261_1846 0.12 -0.8
1,954,856 - Ga0059261_1846 0.12 -1.3
1,954,856 - Ga0059261_1846 0.12 -1.2
1,954,856 - Ga0059261_1846 0.12 -1.2
1,954,856 - Ga0059261_1846 0.12 -1.4
1,954,856 - Ga0059261_1846 0.12 -1.2
1,954,856 - +0.1
1,954,856 - Ga0059261_1846 0.12 -1.6
1,954,856 - Ga0059261_1846 0.12 +0.7
1,954,856 - Ga0059261_1846 0.12 -1.2
1,954,898 + Ga0059261_1846 0.14 -2.1
1,954,898 + Ga0059261_1846 0.14 -0.8
1,954,898 + -0.2
1,954,898 + Ga0059261_1846 0.14 -1.3
1,954,899 - Ga0059261_1846 0.14 -2.2
1,954,899 - +0.5
1,954,899 - Ga0059261_1846 0.14 -0.5
1,954,899 - Ga0059261_1846 0.14 -0.5
1,954,899 - Ga0059261_1846 0.14 -0.7
1,954,917 + Ga0059261_1846 0.15 -2.2
1,954,917 + +0.1
1,954,917 + Ga0059261_1846 0.15 -0.2
1,954,918 - Ga0059261_1846 0.15 -0.7
1,954,918 - Ga0059261_1846 0.15 +0.7
1,954,970 + Ga0059261_1846 0.18 -0.1
1,954,970 + Ga0059261_1846 0.18 +0.1
1,955,289 - Ga0059261_1846 0.36 -2.5
1,955,289 - Ga0059261_1846 0.36 -0.6
1,955,768 + -0.5
1,955,768 + Ga0059261_1846 0.62 -1.2
1,955,768 + Ga0059261_1846 0.62 -0.8
1,955,768 + Ga0059261_1846 0.62 -0.3
1,955,769 - Ga0059261_1846 0.62 +1.1
1,955,769 - Ga0059261_1846 0.62 -0.5
1,955,769 - Ga0059261_1846 0.62 -1.2
1,955,769 - Ga0059261_1846 0.62 -0.5
1,955,769 - Ga0059261_1846 0.62 +0.1
1,955,769 - Ga0059261_1846 0.62 -0.9
1,955,769 - Ga0059261_1846 0.62 -0.7
1,955,816 + Ga0059261_1846 0.65 -0.5
1,955,817 - Ga0059261_1846 0.65 -2.4
1,955,817 - Ga0059261_1846 0.65 +0.3
1,955,817 - Ga0059261_1846 0.65 -0.6
1,955,817 - Ga0059261_1846 0.65 -0.5
1,955,840 + +0.1
1,956,029 + Ga0059261_1846 0.77 -0.9
1,956,029 + Ga0059261_1846 0.77 -0.5
1,956,062 + Ga0059261_1846 0.79 -0.8
1,956,062 + Ga0059261_1846 0.79 -0.5
1,956,173 + Ga0059261_1846 0.85 -1.3
1,956,173 + Ga0059261_1846 0.85 -1.2
1,956,173 + Ga0059261_1846 0.85 -0.7
1,956,173 + +0.1
1,956,173 + Ga0059261_1846 0.85 -1.9
1,956,174 - Ga0059261_1846 0.85 -1.7
1,956,174 - -0.5
1,956,174 - Ga0059261_1846 0.85 +0.5
1,956,174 - Ga0059261_1846 0.85 -1.8
1,956,174 - Ga0059261_1846 0.85 +0.4
1,956,216 + Ga0059261_1846 0.87 +0.8
1,956,216 + Ga0059261_1846 0.87 -0.5
1,956,217 - Ga0059261_1846 0.87 -1.7
1,956,350 + -0.9
1,956,350 + -0.9
1,956,351 - -0.2
1,956,443 + -0.4
1,956,443 + +2.1
1,956,443 + +0.1
1,956,545 + Ga0059261_1847 0.30 +1.4
1,956,545 + Ga0059261_1847 0.30 -0.0
1,956,545 + Ga0059261_1847 0.30 -0.2
1,956,545 + Ga0059261_1847 0.30 +0.3
1,956,545 + Ga0059261_1847 0.30 +0.6
1,956,546 - Ga0059261_1847 0.31 +0.0
1,956,546 - Ga0059261_1847 0.31 +0.3
1,956,546 - Ga0059261_1847 0.31 -0.7
1,956,645 + -0.0
1,956,646 - -1.2
1,956,944 + -1.0
1,956,945 - -1.3
1,956,945 - -1.0
1,956,945 - +0.7
1,957,193 + Ga0059261_1849 0.17 +0.4
1,957,326 + Ga0059261_1849 0.27 -0.8
1,957,431 - Ga0059261_1849 0.34 +0.7

Or see this region's nucleotide sequence