Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1604 and Ga0059261_1605 overlap by 4 nucleotides Ga0059261_1605 and Ga0059261_1606 are separated by 36 nucleotides Ga0059261_1606 and Ga0059261_1607 overlap by 4 nucleotides
Ga0059261_1604: Ga0059261_1604 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 1,681,453 to 1,682,793
_1604
Ga0059261_1605: Ga0059261_1605 - transcriptional regulator, TetR family, at 1,682,790 to 1,683,422
_1605
Ga0059261_1606: Ga0059261_1606 - Domain of unknown function (DUF4281), at 1,683,459 to 1,683,902
_1606
Ga0059261_1607: Ga0059261_1607 - hypothetical protein, at 1,683,899 to 1,684,723
_1607
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1681.798 kb on + strand at 1681.798 kb on + strand at 1681.798 kb on + strand, within Ga0059261_1604 at 1681.798 kb on + strand, within Ga0059261_1604 at 1681.798 kb on + strand, within Ga0059261_1604 at 1681.799 kb on - strand, within Ga0059261_1604 at 1681.855 kb on - strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.960 kb on + strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.961 kb on - strand, within Ga0059261_1604 at 1681.975 kb on + strand, within Ga0059261_1604 at 1681.975 kb on + strand, within Ga0059261_1604 at 1681.975 kb on + strand, within Ga0059261_1604 at 1681.975 kb on + strand, within Ga0059261_1604 at 1681.976 kb on - strand, within Ga0059261_1604 at 1681.976 kb on - strand, within Ga0059261_1604 at 1682.167 kb on + strand, within Ga0059261_1604 at 1682.168 kb on - strand, within Ga0059261_1604 at 1682.277 kb on + strand, within Ga0059261_1604 at 1682.278 kb on - strand, within Ga0059261_1604 at 1682.318 kb on - strand, within Ga0059261_1604 at 1682.318 kb on - strand, within Ga0059261_1604 at 1682.449 kb on + strand, within Ga0059261_1604 at 1682.449 kb on + strand, within Ga0059261_1604 at 1682.473 kb on + strand, within Ga0059261_1604 at 1682.474 kb on - strand, within Ga0059261_1604 at 1682.474 kb on - strand, within Ga0059261_1604 at 1682.474 kb on - strand, within Ga0059261_1604 at 1682.791 kb on + strand at 1682.791 kb on + strand at 1682.791 kb on + strand at 1682.792 kb on - strand at 1682.792 kb on - strand at 1682.941 kb on - strand, within Ga0059261_1605 at 1682.941 kb on - strand, within Ga0059261_1605 at 1683.026 kb on - strand, within Ga0059261_1605 at 1683.026 kb on - strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.106 kb on + strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.107 kb on - strand, within Ga0059261_1605 at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.367 kb on + strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.368 kb on - strand at 1683.422 kb on + strand at 1683.559 kb on - strand, within Ga0059261_1606 at 1683.610 kb on - strand, within Ga0059261_1606 at 1683.610 kb on - strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.726 kb on + strand, within Ga0059261_1606 at 1683.727 kb on - strand, within Ga0059261_1606 at 1683.727 kb on - strand, within Ga0059261_1606 at 1683.727 kb on - strand, within Ga0059261_1606 at 1683.855 kb on + strand, within Ga0059261_1606 at 1683.855 kb on + strand, within Ga0059261_1606 at 1683.855 kb on + strand, within Ga0059261_1606 at 1683.855 kb on + strand, within Ga0059261_1606 at 1683.855 kb on + strand, within Ga0059261_1606 at 1683.856 kb on - strand, within Ga0059261_1606 at 1683.973 kb on + strand at 1683.973 kb on + strand at 1683.980 kb on + strand at 1684.011 kb on + strand, within Ga0059261_1607 at 1684.011 kb on + strand, within Ga0059261_1607 at 1684.012 kb on - strand, within Ga0059261_1607 at 1684.012 kb on - strand, within Ga0059261_1607 at 1684.063 kb on + strand, within Ga0059261_1607 at 1684.063 kb on + strand, within Ga0059261_1607 at 1684.063 kb on + strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.064 kb on - strand, within Ga0059261_1607 at 1684.136 kb on + strand, within Ga0059261_1607 at 1684.136 kb on + strand, within Ga0059261_1607 at 1684.136 kb on + strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.137 kb on - strand, within Ga0059261_1607 at 1684.220 kb on + strand, within Ga0059261_1607 at 1684.220 kb on + strand, within Ga0059261_1607 at 1684.220 kb on + strand, within Ga0059261_1607 at 1684.220 kb on + strand, within Ga0059261_1607 at 1684.221 kb on - strand at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.221 kb on - strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.292 kb on + strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.293 kb on - strand, within Ga0059261_1607 at 1684.339 kb on - strand, within Ga0059261_1607
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,681,798 + +2.0 1,681,798 + +2.0 1,681,798 + Ga0059261_1604 0.26 -0.1 1,681,798 + Ga0059261_1604 0.26 -0.4 1,681,798 + Ga0059261_1604 0.26 +0.3 1,681,799 - Ga0059261_1604 0.26 +1.2 1,681,855 - Ga0059261_1604 0.30 +0.1 1,681,960 + Ga0059261_1604 0.38 +0.4 1,681,960 + Ga0059261_1604 0.38 +2.4 1,681,960 + Ga0059261_1604 0.38 +0.3 1,681,960 + Ga0059261_1604 0.38 +0.0 1,681,960 + Ga0059261_1604 0.38 +0.3 1,681,960 + Ga0059261_1604 0.38 +0.8 1,681,960 + Ga0059261_1604 0.38 +0.5 1,681,960 + Ga0059261_1604 0.38 +0.6 1,681,961 - Ga0059261_1604 0.38 +0.4 1,681,961 - Ga0059261_1604 0.38 +0.8 1,681,961 - Ga0059261_1604 0.38 -0.4 1,681,961 - Ga0059261_1604 0.38 +0.0 1,681,961 - Ga0059261_1604 0.38 -0.3 1,681,961 - Ga0059261_1604 0.38 -0.5 1,681,975 + Ga0059261_1604 0.39 -1.2 1,681,975 + Ga0059261_1604 0.39 +0.9 1,681,975 + Ga0059261_1604 0.39 +0.7 1,681,975 + Ga0059261_1604 0.39 -0.4 1,681,976 - Ga0059261_1604 0.39 -1.0 1,681,976 - Ga0059261_1604 0.39 +0.2 1,682,167 + Ga0059261_1604 0.53 -0.2 1,682,168 - Ga0059261_1604 0.53 +0.8 1,682,277 + Ga0059261_1604 0.61 -0.2 1,682,278 - Ga0059261_1604 0.62 -0.2 1,682,318 - Ga0059261_1604 0.65 +0.2 1,682,318 - Ga0059261_1604 0.65 +0.8 1,682,449 + Ga0059261_1604 0.74 +0.8 1,682,449 + Ga0059261_1604 0.74 +0.0 1,682,473 + Ga0059261_1604 0.76 -0.6 1,682,474 - Ga0059261_1604 0.76 -0.8 1,682,474 - Ga0059261_1604 0.76 -0.7 1,682,474 - Ga0059261_1604 0.76 +0.3 1,682,791 + -0.2 1,682,791 + +0.8 1,682,791 + +0.2 1,682,792 - +0.5 1,682,792 - -0.2 1,682,941 - Ga0059261_1605 0.24 +0.5 1,682,941 - Ga0059261_1605 0.24 +1.0 1,683,026 - Ga0059261_1605 0.37 +0.0 1,683,026 - Ga0059261_1605 0.37 -1.0 1,683,106 + Ga0059261_1605 0.50 -0.2 1,683,106 + Ga0059261_1605 0.50 -0.5 1,683,106 + Ga0059261_1605 0.50 -1.1 1,683,106 + Ga0059261_1605 0.50 -1.0 1,683,106 + Ga0059261_1605 0.50 -0.8 1,683,106 + Ga0059261_1605 0.50 -1.3 1,683,107 - Ga0059261_1605 0.50 -1.0 1,683,107 - Ga0059261_1605 0.50 -0.9 1,683,107 - Ga0059261_1605 0.50 -0.1 1,683,107 - Ga0059261_1605 0.50 -1.3 1,683,107 - Ga0059261_1605 0.50 -0.9 1,683,107 - Ga0059261_1605 0.50 -0.8 1,683,107 - Ga0059261_1605 0.50 -0.8 1,683,107 - Ga0059261_1605 0.50 -0.8 1,683,367 + -0.4 1,683,367 + -1.0 1,683,367 + -0.7 1,683,367 + -0.8 1,683,367 + -0.7 1,683,367 + -0.9 1,683,367 + -0.3 1,683,368 - +0.2 1,683,368 - +0.4 1,683,368 - +1.4 1,683,368 - +0.1 1,683,368 - -0.1 1,683,368 - +1.3 1,683,368 - -0.4 1,683,368 - -2.0 1,683,422 + +1.0 1,683,559 - Ga0059261_1606 0.23 -0.5 1,683,610 - Ga0059261_1606 0.34 +0.1 1,683,610 - Ga0059261_1606 0.34 +1.1 1,683,726 + Ga0059261_1606 0.60 +1.6 1,683,726 + Ga0059261_1606 0.60 +0.7 1,683,726 + Ga0059261_1606 0.60 -0.8 1,683,726 + Ga0059261_1606 0.60 -0.3 1,683,726 + Ga0059261_1606 0.60 -0.2 1,683,726 + Ga0059261_1606 0.60 -0.1 1,683,726 + Ga0059261_1606 0.60 -0.1 1,683,726 + Ga0059261_1606 0.60 +0.0 1,683,726 + Ga0059261_1606 0.60 -0.1 1,683,727 - Ga0059261_1606 0.60 +0.2 1,683,727 - Ga0059261_1606 0.60 -0.1 1,683,727 - Ga0059261_1606 0.60 -0.1 1,683,855 + Ga0059261_1606 0.89 +1.8 1,683,855 + Ga0059261_1606 0.89 +2.0 1,683,855 + Ga0059261_1606 0.89 -0.1 1,683,855 + Ga0059261_1606 0.89 +1.0 1,683,855 + Ga0059261_1606 0.89 -0.3 1,683,856 - Ga0059261_1606 0.89 +0.2 1,683,973 + -0.2 1,683,973 + -0.3 1,683,980 + +0.1 1,684,011 + Ga0059261_1607 0.14 +0.8 1,684,011 + Ga0059261_1607 0.14 +0.3 1,684,012 - Ga0059261_1607 0.14 -0.7 1,684,012 - Ga0059261_1607 0.14 -0.1 1,684,063 + Ga0059261_1607 0.20 +0.4 1,684,063 + Ga0059261_1607 0.20 -0.5 1,684,063 + Ga0059261_1607 0.20 +0.7 1,684,064 - Ga0059261_1607 0.20 +0.0 1,684,064 - Ga0059261_1607 0.20 +0.4 1,684,064 - Ga0059261_1607 0.20 -0.8 1,684,064 - Ga0059261_1607 0.20 +0.4 1,684,064 - Ga0059261_1607 0.20 -0.3 1,684,064 - Ga0059261_1607 0.20 -0.1 1,684,064 - Ga0059261_1607 0.20 -1.3 1,684,136 + Ga0059261_1607 0.29 +0.9 1,684,136 + Ga0059261_1607 0.29 -0.2 1,684,136 + Ga0059261_1607 0.29 +0.0 1,684,137 - Ga0059261_1607 0.29 -0.0 1,684,137 - Ga0059261_1607 0.29 +0.6 1,684,137 - Ga0059261_1607 0.29 +0.3 1,684,137 - Ga0059261_1607 0.29 -1.1 1,684,137 - Ga0059261_1607 0.29 -0.1 1,684,137 - Ga0059261_1607 0.29 -1.0 1,684,137 - Ga0059261_1607 0.29 +0.7 1,684,137 - Ga0059261_1607 0.29 +0.5 1,684,220 + Ga0059261_1607 0.39 -0.3 1,684,220 + Ga0059261_1607 0.39 +0.5 1,684,220 + Ga0059261_1607 0.39 +0.3 1,684,220 + Ga0059261_1607 0.39 -1.0 1,684,221 - +0.0 1,684,221 - Ga0059261_1607 0.39 +0.6 1,684,221 - Ga0059261_1607 0.39 +0.3 1,684,221 - Ga0059261_1607 0.39 -0.0 1,684,221 - Ga0059261_1607 0.39 +0.0 1,684,221 - Ga0059261_1607 0.39 -0.3 1,684,221 - Ga0059261_1607 0.39 -0.5 1,684,221 - Ga0059261_1607 0.39 +0.3 1,684,292 + Ga0059261_1607 0.48 -0.2 1,684,292 + Ga0059261_1607 0.48 +0.3 1,684,292 + Ga0059261_1607 0.48 -0.2 1,684,292 + Ga0059261_1607 0.48 -0.7 1,684,292 + Ga0059261_1607 0.48 +0.2 1,684,292 + Ga0059261_1607 0.48 -0.3 1,684,292 + Ga0059261_1607 0.48 -0.2 1,684,292 + Ga0059261_1607 0.48 -0.4 1,684,292 + Ga0059261_1607 0.48 +0.0 1,684,293 - Ga0059261_1607 0.48 -0.2 1,684,293 - Ga0059261_1607 0.48 +0.7 1,684,293 - Ga0059261_1607 0.48 -1.3 1,684,293 - Ga0059261_1607 0.48 +0.6 1,684,293 - Ga0059261_1607 0.48 +0.3 1,684,293 - Ga0059261_1607 0.48 +0.1 1,684,293 - Ga0059261_1607 0.48 -0.6 1,684,293 - Ga0059261_1607 0.48 +1.4 1,684,293 - Ga0059261_1607 0.48 -0.1 1,684,293 - Ga0059261_1607 0.48 +0.2 1,684,339 - Ga0059261_1607 0.53 -0.3
Or see this region's nucleotide sequence