Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1217

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1216 and Ga0059261_1217 are separated by 191 nucleotidesGa0059261_1217 and Ga0059261_1218 are separated by 139 nucleotidesGa0059261_1218 and Ga0059261_1219 are separated by 2 nucleotides Ga0059261_1216: Ga0059261_1216 - ParB-like nuclease domain, at 1,272,400 to 1,273,437 _1216 Ga0059261_1217: Ga0059261_1217 - MobA/MobL family, at 1,273,629 to 1,275,440 _1217 Ga0059261_1218: Ga0059261_1218 - hypothetical protein, at 1,275,580 to 1,276,101 _1218 Ga0059261_1219: Ga0059261_1219 - hypothetical protein, at 1,276,104 to 1,276,730 _1219 Position (kb) 1273 1274 1275 1276Strain fitness (log2 ratio) -1 0 1at 1275.107 kb on + strand, within Ga0059261_1217at 1275.107 kb on + strand, within Ga0059261_1217at 1275.147 kb on - strand, within Ga0059261_1217at 1275.204 kb on + strand, within Ga0059261_1217at 1275.204 kb on + strand, within Ga0059261_1217at 1275.204 kb on + strand, within Ga0059261_1217at 1275.439 kb on - strandat 1275.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,275,107 + Ga0059261_1217 0.82 -0.7
1,275,107 + Ga0059261_1217 0.82 +0.4
1,275,147 - Ga0059261_1217 0.84 -1.4
1,275,204 + Ga0059261_1217 0.87 -0.5
1,275,204 + Ga0059261_1217 0.87 -0.5
1,275,204 + Ga0059261_1217 0.87 -0.7
1,275,439 - -0.6
1,275,439 - +1.5

Or see this region's nucleotide sequence