Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1050

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1048 and Ga0059261_1049 are separated by 123 nucleotidesGa0059261_1049 and Ga0059261_1050 are separated by 41 nucleotidesGa0059261_1050 and Ga0059261_1051 are separated by 32 nucleotidesGa0059261_1051 and Ga0059261_1052 overlap by 11 nucleotidesGa0059261_1052 and Ga0059261_1053 are separated by 103 nucleotides Ga0059261_1048: Ga0059261_1048 - imidazoleglycerol phosphate synthase, cyclase subunit, at 1,081,195 to 1,081,962 _1048 Ga0059261_1049: Ga0059261_1049 - PEP-CTERM protein-sorting domain, at 1,082,086 to 1,082,349 _1049 Ga0059261_1050: Ga0059261_1050 - hypothetical protein, at 1,082,391 to 1,082,573 _1050 Ga0059261_1051: Ga0059261_1051 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 1,082,606 to 1,082,929 _1051 Ga0059261_1052: Ga0059261_1052 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,082,919 to 1,083,296 _1052 Ga0059261_1053: Ga0059261_1053 - amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3), at 1,083,400 to 1,084,938 _1053 Position (kb) 1082 1083Strain fitness (log2 ratio) -2 -1 0 1 2at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strandat 1081.619 kb on + strand, within Ga0059261_1048at 1081.619 kb on + strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.620 kb on - strand, within Ga0059261_1048at 1081.623 kb on + strand, within Ga0059261_1048at 1081.623 kb on + strand, within Ga0059261_1048at 1081.623 kb on + strand, within Ga0059261_1048at 1081.623 kb on + strand, within Ga0059261_1048at 1081.623 kb on + strand, within Ga0059261_1048at 1081.624 kb on - strand, within Ga0059261_1048at 1081.624 kb on - strand, within Ga0059261_1048at 1081.624 kb on - strand, within Ga0059261_1048at 1081.624 kb on - strand, within Ga0059261_1048at 1081.624 kb on - strand, within Ga0059261_1048at 1081.744 kb on + strand, within Ga0059261_1048at 1081.744 kb on + strand, within Ga0059261_1048at 1081.745 kb on - strand, within Ga0059261_1048at 1081.745 kb on - strand, within Ga0059261_1048at 1081.745 kb on - strandat 1081.745 kb on - strand, within Ga0059261_1048at 1081.966 kb on + strandat 1081.967 kb on - strandat 1081.972 kb on + strandat 1081.972 kb on + strandat 1081.973 kb on - strandat 1081.973 kb on - strandat 1081.973 kb on - strandat 1081.973 kb on - strandat 1081.995 kb on + strandat 1081.995 kb on + strandat 1082.150 kb on + strand, within Ga0059261_1049at 1082.150 kb on + strand, within Ga0059261_1049at 1082.151 kb on - strand, within Ga0059261_1049at 1082.151 kb on - strand, within Ga0059261_1049at 1082.151 kb on - strand, within Ga0059261_1049at 1082.211 kb on + strand, within Ga0059261_1049at 1082.211 kb on + strand, within Ga0059261_1049at 1082.211 kb on + strand, within Ga0059261_1049at 1082.212 kb on - strand, within Ga0059261_1049at 1082.212 kb on - strand, within Ga0059261_1049at 1082.212 kb on - strand, within Ga0059261_1049at 1082.212 kb on - strand, within Ga0059261_1049at 1082.212 kb on - strand, within Ga0059261_1049at 1082.232 kb on + strand, within Ga0059261_1049at 1082.347 kb on + strandat 1082.347 kb on + strandat 1082.347 kb on + strandat 1082.347 kb on + strandat 1082.348 kb on - strandat 1082.379 kb on + strandat 1082.379 kb on + strandat 1082.380 kb on - strandat 1082.380 kb on - strandat 1082.380 kb on - strandat 1082.468 kb on + strand, within Ga0059261_1050at 1082.469 kb on - strand, within Ga0059261_1050at 1082.469 kb on - strand, within Ga0059261_1050at 1082.617 kb on + strandat 1082.617 kb on + strandat 1082.618 kb on - strandat 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.678 kb on + strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.679 kb on - strand, within Ga0059261_1051at 1082.943 kb on + strandat 1082.943 kb on + strandat 1083.003 kb on + strand, within Ga0059261_1052at 1083.003 kb on + strand, within Ga0059261_1052at 1083.015 kb on + strand, within Ga0059261_1052at 1083.016 kb on - strand, within Ga0059261_1052at 1083.016 kb on - strand, within Ga0059261_1052at 1083.016 kb on - strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.084 kb on + strand, within Ga0059261_1052at 1083.085 kb on - strandat 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.085 kb on - strand, within Ga0059261_1052at 1083.182 kb on - strand, within Ga0059261_1052at 1083.182 kb on - strand, within Ga0059261_1052at 1083.235 kb on + strand, within Ga0059261_1052at 1083.235 kb on + strand, within Ga0059261_1052at 1083.236 kb on - strand, within Ga0059261_1052at 1083.236 kb on - strand, within Ga0059261_1052at 1083.236 kb on - strand, within Ga0059261_1052at 1083.248 kb on + strand, within Ga0059261_1052at 1083.248 kb on + strand, within Ga0059261_1052at 1083.249 kb on - strand, within Ga0059261_1052at 1083.249 kb on - strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.254 kb on + strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.255 kb on - strand, within Ga0059261_1052at 1083.295 kb on - strandat 1083.295 kb on - strandat 1083.353 kb on + strandat 1083.405 kb on - strandat 1083.416 kb on + strandat 1083.416 kb on + strandat 1083.417 kb on - strandat 1083.438 kb on - strandat 1083.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,081,619 + Ga0059261_1048 0.55 -1.9
1,081,619 + Ga0059261_1048 0.55 +0.2
1,081,619 + Ga0059261_1048 0.55 -0.9
1,081,619 + Ga0059261_1048 0.55 +0.3
1,081,619 + Ga0059261_1048 0.55 +1.3
1,081,619 + Ga0059261_1048 0.55 +0.1
1,081,619 + -0.1
1,081,619 + Ga0059261_1048 0.55 -1.5
1,081,619 + Ga0059261_1048 0.55 +0.1
1,081,620 - Ga0059261_1048 0.55 -1.6
1,081,620 - Ga0059261_1048 0.55 -0.1
1,081,620 - Ga0059261_1048 0.55 +0.2
1,081,620 - Ga0059261_1048 0.55 +0.0
1,081,620 - Ga0059261_1048 0.55 -2.5
1,081,620 - Ga0059261_1048 0.55 +0.0
1,081,620 - Ga0059261_1048 0.55 -0.5
1,081,620 - Ga0059261_1048 0.55 +0.2
1,081,620 - Ga0059261_1048 0.55 +0.9
1,081,620 - Ga0059261_1048 0.55 -0.1
1,081,620 - Ga0059261_1048 0.55 -0.7
1,081,623 + Ga0059261_1048 0.56 -0.3
1,081,623 + Ga0059261_1048 0.56 +1.3
1,081,623 + Ga0059261_1048 0.56 -0.5
1,081,623 + Ga0059261_1048 0.56 +0.3
1,081,623 + Ga0059261_1048 0.56 -0.1
1,081,624 - Ga0059261_1048 0.56 +0.7
1,081,624 - Ga0059261_1048 0.56 -1.0
1,081,624 - Ga0059261_1048 0.56 +0.2
1,081,624 - Ga0059261_1048 0.56 -0.9
1,081,624 - Ga0059261_1048 0.56 +0.4
1,081,744 + Ga0059261_1048 0.71 +0.0
1,081,744 + Ga0059261_1048 0.71 +0.3
1,081,745 - Ga0059261_1048 0.72 +0.2
1,081,745 - Ga0059261_1048 0.72 -1.4
1,081,745 - +0.3
1,081,745 - Ga0059261_1048 0.72 +0.2
1,081,966 + -0.8
1,081,967 - +0.3
1,081,972 + -1.0
1,081,972 + -0.2
1,081,973 - +0.7
1,081,973 - -0.2
1,081,973 - +0.4
1,081,973 - -0.5
1,081,995 + +0.1
1,081,995 + +1.7
1,082,150 + Ga0059261_1049 0.24 +0.6
1,082,150 + Ga0059261_1049 0.24 -0.7
1,082,151 - Ga0059261_1049 0.25 +0.2
1,082,151 - Ga0059261_1049 0.25 +0.5
1,082,151 - Ga0059261_1049 0.25 -0.1
1,082,211 + Ga0059261_1049 0.47 +0.5
1,082,211 + Ga0059261_1049 0.47 -0.1
1,082,211 + Ga0059261_1049 0.47 -0.6
1,082,212 - Ga0059261_1049 0.48 -0.9
1,082,212 - Ga0059261_1049 0.48 -1.4
1,082,212 - Ga0059261_1049 0.48 +0.6
1,082,212 - Ga0059261_1049 0.48 -0.0
1,082,212 - Ga0059261_1049 0.48 -0.4
1,082,232 + Ga0059261_1049 0.55 +0.2
1,082,347 + -0.5
1,082,347 + +1.9
1,082,347 + -0.2
1,082,347 + +0.9
1,082,348 - -0.3
1,082,379 + -0.2
1,082,379 + -0.7
1,082,380 - -0.4
1,082,380 - +0.6
1,082,380 - -0.6
1,082,468 + Ga0059261_1050 0.42 -0.9
1,082,469 - Ga0059261_1050 0.43 -0.9
1,082,469 - Ga0059261_1050 0.43 +0.3
1,082,617 + +0.9
1,082,617 + -0.1
1,082,618 - -0.0
1,082,678 + Ga0059261_1051 0.22 -0.1
1,082,678 + Ga0059261_1051 0.22 +0.4
1,082,678 + Ga0059261_1051 0.22 +0.1
1,082,678 + Ga0059261_1051 0.22 -1.0
1,082,678 + Ga0059261_1051 0.22 +0.3
1,082,678 + Ga0059261_1051 0.22 -0.7
1,082,678 + Ga0059261_1051 0.22 -0.2
1,082,678 + Ga0059261_1051 0.22 -0.4
1,082,678 + Ga0059261_1051 0.22 +0.5
1,082,678 + Ga0059261_1051 0.22 +0.4
1,082,679 - Ga0059261_1051 0.23 +0.2
1,082,679 - Ga0059261_1051 0.23 -0.3
1,082,679 - Ga0059261_1051 0.23 +0.1
1,082,679 - Ga0059261_1051 0.23 -0.8
1,082,679 - Ga0059261_1051 0.23 -0.5
1,082,679 - Ga0059261_1051 0.23 +0.5
1,082,679 - Ga0059261_1051 0.23 +0.1
1,082,679 - Ga0059261_1051 0.23 -0.8
1,082,679 - Ga0059261_1051 0.23 +0.8
1,082,679 - Ga0059261_1051 0.23 +0.2
1,082,679 - Ga0059261_1051 0.23 -0.3
1,082,943 + +0.9
1,082,943 + -1.7
1,083,003 + Ga0059261_1052 0.22 -0.2
1,083,003 + Ga0059261_1052 0.22 -0.6
1,083,015 + Ga0059261_1052 0.25 +0.6
1,083,016 - Ga0059261_1052 0.26 -0.7
1,083,016 - Ga0059261_1052 0.26 -0.7
1,083,016 - Ga0059261_1052 0.26 +0.9
1,083,084 + Ga0059261_1052 0.44 +1.9
1,083,084 + Ga0059261_1052 0.44 -0.4
1,083,084 + Ga0059261_1052 0.44 -0.6
1,083,084 + Ga0059261_1052 0.44 -0.4
1,083,084 + Ga0059261_1052 0.44 -0.5
1,083,084 + Ga0059261_1052 0.44 +0.3
1,083,084 + Ga0059261_1052 0.44 -0.1
1,083,084 + Ga0059261_1052 0.44 +0.3
1,083,084 + Ga0059261_1052 0.44 -0.5
1,083,084 + Ga0059261_1052 0.44 +1.5
1,083,085 - +0.5
1,083,085 - Ga0059261_1052 0.44 -0.1
1,083,085 - Ga0059261_1052 0.44 +0.2
1,083,085 - Ga0059261_1052 0.44 +0.2
1,083,085 - Ga0059261_1052 0.44 -0.7
1,083,085 - Ga0059261_1052 0.44 -0.3
1,083,085 - Ga0059261_1052 0.44 -0.9
1,083,085 - Ga0059261_1052 0.44 +0.6
1,083,085 - Ga0059261_1052 0.44 -0.1
1,083,085 - Ga0059261_1052 0.44 -0.4
1,083,085 - Ga0059261_1052 0.44 -0.5
1,083,085 - Ga0059261_1052 0.44 -0.3
1,083,182 - Ga0059261_1052 0.70 -0.3
1,083,182 - Ga0059261_1052 0.70 -0.3
1,083,235 + Ga0059261_1052 0.84 +0.2
1,083,235 + Ga0059261_1052 0.84 +0.1
1,083,236 - Ga0059261_1052 0.84 +0.5
1,083,236 - Ga0059261_1052 0.84 +0.1
1,083,236 - Ga0059261_1052 0.84 +0.1
1,083,248 + Ga0059261_1052 0.87 -0.1
1,083,248 + Ga0059261_1052 0.87 +0.8
1,083,249 - Ga0059261_1052 0.87 +0.2
1,083,249 - Ga0059261_1052 0.87 -0.3
1,083,254 + Ga0059261_1052 0.89 -0.1
1,083,254 + Ga0059261_1052 0.89 +0.6
1,083,254 + Ga0059261_1052 0.89 -1.1
1,083,254 + Ga0059261_1052 0.89 -0.8
1,083,254 + Ga0059261_1052 0.89 -0.2
1,083,254 + Ga0059261_1052 0.89 -0.7
1,083,254 + Ga0059261_1052 0.89 -0.8
1,083,254 + Ga0059261_1052 0.89 +0.3
1,083,254 + Ga0059261_1052 0.89 +0.2
1,083,254 + Ga0059261_1052 0.89 +0.4
1,083,254 + Ga0059261_1052 0.89 -0.2
1,083,254 + Ga0059261_1052 0.89 +0.3
1,083,255 - Ga0059261_1052 0.89 -0.2
1,083,255 - Ga0059261_1052 0.89 -1.1
1,083,255 - Ga0059261_1052 0.89 +0.1
1,083,255 - Ga0059261_1052 0.89 -0.3
1,083,255 - Ga0059261_1052 0.89 +0.2
1,083,255 - Ga0059261_1052 0.89 +0.4
1,083,255 - Ga0059261_1052 0.89 -0.8
1,083,255 - Ga0059261_1052 0.89 -0.2
1,083,295 - +0.7
1,083,295 - +1.2
1,083,353 + -0.8
1,083,405 - -0.2
1,083,416 + +0.2
1,083,416 + +0.3
1,083,417 - +0.6
1,083,438 - +0.6
1,083,438 - -0.3

Or see this region's nucleotide sequence