Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0949 and Ga0059261_0950 overlap by 4 nucleotides Ga0059261_0950 and Ga0059261_0951 are separated by 36 nucleotides
Ga0059261_0949: Ga0059261_0949 - His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 979,180 to 980,556
_0949
Ga0059261_0950: Ga0059261_0950 - Uncharacterized protein conserved in bacteria (DUF2336), at 980,553 to 981,644
_0950
Ga0059261_0951: Ga0059261_0951 - hypothetical protein, at 981,681 to 982,850
_0951
Position (kb)
980
981
982 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 979.743 kb on - strand, within Ga0059261_0949 at 979.743 kb on - strand, within Ga0059261_0949 at 981.076 kb on - strand, within Ga0059261_0950 at 981.085 kb on + strand, within Ga0059261_0950 at 981.086 kb on - strand, within Ga0059261_0950 at 981.086 kb on - strand, within Ga0059261_0950 at 981.086 kb on - strand, within Ga0059261_0950 at 981.111 kb on - strand, within Ga0059261_0950 at 981.375 kb on - strand, within Ga0059261_0950 at 981.617 kb on + strand at 981.617 kb on + strand at 981.617 kb on + strand at 981.617 kb on + strand at 981.618 kb on - strand at 981.618 kb on - strand at 981.618 kb on - strand at 981.618 kb on - strand at 981.618 kb on - strand at 981.618 kb on - strand at 981.682 kb on + strand at 981.682 kb on + strand at 981.682 kb on + strand at 981.682 kb on + strand at 981.683 kb on - strand at 981.683 kb on - strand at 981.683 kb on - strand at 981.683 kb on - strand at 981.734 kb on - strand at 981.734 kb on - strand at 981.802 kb on + strand, within Ga0059261_0951 at 981.802 kb on + strand at 981.803 kb on - strand, within Ga0059261_0951 at 981.803 kb on - strand, within Ga0059261_0951 at 981.803 kb on - strand, within Ga0059261_0951 at 981.803 kb on - strand, within Ga0059261_0951 at 982.329 kb on + strand, within Ga0059261_0951 at 982.329 kb on + strand at 982.330 kb on - strand, within Ga0059261_0951 at 982.330 kb on - strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.384 kb on + strand, within Ga0059261_0951 at 982.385 kb on - strand, within Ga0059261_0951 at 982.385 kb on - strand, within Ga0059261_0951
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 979,743 - Ga0059261_0949 0.41 +1.3 979,743 - Ga0059261_0949 0.41 -1.4 981,076 - Ga0059261_0950 0.48 -0.8 981,085 + Ga0059261_0950 0.49 -0.1 981,086 - Ga0059261_0950 0.49 -1.0 981,086 - Ga0059261_0950 0.49 +0.9 981,086 - Ga0059261_0950 0.49 -1.0 981,111 - Ga0059261_0950 0.51 +0.9 981,375 - Ga0059261_0950 0.75 -1.8 981,617 + +1.9 981,617 + -0.5 981,617 + -0.1 981,617 + -0.5 981,618 - +0.6 981,618 - -0.3 981,618 - -0.2 981,618 - -0.1 981,618 - -0.0 981,618 - +0.5 981,682 + +0.1 981,682 + +0.1 981,682 + +0.1 981,682 + -0.4 981,683 - +0.6 981,683 - -1.1 981,683 - -1.2 981,683 - +0.1 981,734 - -0.3 981,734 - -0.3 981,802 + Ga0059261_0951 0.10 -1.7 981,802 + +1.9 981,803 - Ga0059261_0951 0.10 -1.0 981,803 - Ga0059261_0951 0.10 -0.4 981,803 - Ga0059261_0951 0.10 -0.9 981,803 - Ga0059261_0951 0.10 -0.1 982,329 + Ga0059261_0951 0.55 +0.2 982,329 + -1.1 982,330 - Ga0059261_0951 0.55 -0.4 982,330 - Ga0059261_0951 0.55 -0.2 982,384 + Ga0059261_0951 0.60 +0.8 982,384 + Ga0059261_0951 0.60 -0.7 982,384 + Ga0059261_0951 0.60 -0.3 982,384 + Ga0059261_0951 0.60 +0.4 982,384 + Ga0059261_0951 0.60 -0.8 982,384 + Ga0059261_0951 0.60 +0.8 982,384 + Ga0059261_0951 0.60 -0.5 982,385 - Ga0059261_0951 0.60 +1.2 982,385 - Ga0059261_0951 0.60 -0.0
Or see this region's nucleotide sequence