Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0661 and Ga0059261_0662 are separated by 89 nucleotides Ga0059261_0662 and Ga0059261_0663 overlap by 4 nucleotides Ga0059261_0663 and Ga0059261_0664 are separated by 120 nucleotides Ga0059261_0664 and Ga0059261_0665 are separated by 80 nucleotides
Ga0059261_0661: Ga0059261_0661 - hypothetical protein, at 701,117 to 701,263
_0661
Ga0059261_0662: Ga0059261_0662 - Truncated hemoglobins, at 701,353 to 701,769
_0662
Ga0059261_0663: Ga0059261_0663 - Prokaryotic homologs of the JAB domain, at 701,766 to 702,068
_0663
Ga0059261_0664: Ga0059261_0664 - pseudouridine synthase, RluA family, at 702,189 to 703,142
_0664
Ga0059261_0665: Ga0059261_0665 - alternative sigma factor RpoH, at 703,223 to 704,128
_0665
Position (kb) 702
703
704 Strain fitness (log2 ratio) -2
-1
0
1 at 701.279 kb on - strand at 701.279 kb on - strand at 701.279 kb on - strand at 701.291 kb on - strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.361 kb on + strand at 701.361 kb on + strand at 701.361 kb on + strand at 701.362 kb on - strand at 701.362 kb on - strand at 701.362 kb on - strand at 701.434 kb on + strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.767 kb on + strand at 701.768 kb on - strand at 701.768 kb on - strand at 702.182 kb on + strand at 702.182 kb on + strand at 702.182 kb on + strand at 702.183 kb on - strand at 702.183 kb on - strand at 702.211 kb on + strand at 702.211 kb on + strand at 702.211 kb on + strand at 702.212 kb on - strand at 702.212 kb on - strand at 702.715 kb on - strand, within Ga0059261_0664 at 702.920 kb on - strand, within Ga0059261_0664 at 703.033 kb on + strand, within Ga0059261_0664 at 703.033 kb on + strand, within Ga0059261_0664 at 703.033 kb on + strand, within Ga0059261_0664 at 703.034 kb on - strand, within Ga0059261_0664 at 703.066 kb on + strand at 703.066 kb on + strand at 703.066 kb on + strand at 703.066 kb on + strand at 703.067 kb on - strand at 703.138 kb on + strand at 703.140 kb on + strand at 703.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 701,279 - +0.3 701,279 - -0.7 701,279 - +0.1 701,291 - -0.4 701,350 + -0.9 701,350 + +1.1 701,350 + +0.6 701,350 + -0.0 701,350 + +0.8 701,350 + -0.7 701,350 + +0.0 701,350 + -0.1 701,350 + +0.7 701,350 + -0.4 701,351 - -0.4 701,351 - +0.1 701,351 - +0.5 701,351 - +0.2 701,351 - +0.0 701,351 - +0.1 701,351 - +0.6 701,351 - +0.5 701,351 - -0.2 701,361 + -0.8 701,361 + -0.3 701,361 + -0.3 701,362 - +0.4 701,362 - +0.6 701,362 - -0.0 701,434 + Ga0059261_0662 0.19 -0.3 701,435 - Ga0059261_0662 0.20 -0.1 701,435 - Ga0059261_0662 0.20 -0.0 701,435 - Ga0059261_0662 0.20 -1.1 701,557 + Ga0059261_0662 0.49 -0.7 701,557 + Ga0059261_0662 0.49 -0.5 701,557 + Ga0059261_0662 0.49 -0.1 701,767 + +0.4 701,768 - -1.3 701,768 - +0.1 702,182 + +0.4 702,182 + +0.5 702,182 + -0.9 702,183 - -0.1 702,183 - +0.3 702,211 + +0.2 702,211 + -0.6 702,211 + +0.4 702,212 - +0.5 702,212 - -0.9 702,715 - Ga0059261_0664 0.55 -0.3 702,920 - Ga0059261_0664 0.77 +0.9 703,033 + Ga0059261_0664 0.88 -1.1 703,033 + Ga0059261_0664 0.88 -1.4 703,033 + Ga0059261_0664 0.88 -2.7 703,034 - Ga0059261_0664 0.89 -1.4 703,066 + +0.5 703,066 + -1.1 703,066 + -1.1 703,066 + +0.5 703,067 - -0.9 703,138 + -0.0 703,140 + -0.1 703,140 + -0.7
Or see this region's nucleotide sequence