Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0611 and Ga0059261_0612 are separated by 100 nucleotides Ga0059261_0612 and Ga0059261_0613 are separated by 27 nucleotides Ga0059261_0613 and Ga0059261_0614 are separated by 25 nucleotides
Ga0059261_0611: Ga0059261_0611 - Peptidase family M23, at 646,237 to 646,695
_0611
Ga0059261_0612: Ga0059261_0612 - RNA polymerase sigma factor, sigma-70 family, at 646,796 to 647,311
_0612
Ga0059261_0613: Ga0059261_0613 - FecR family protein, at 647,339 to 648,304
_0613
Ga0059261_0614: Ga0059261_0614 - Outer membrane receptor proteins, mostly Fe transport, at 648,330 to 650,780
_0614
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.725 kb on - strand at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 647.338 kb on + strand at 648.044 kb on - strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.081 kb on - strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.175 kb on + strand at 648.176 kb on - strand, within Ga0059261_0613 at 648.274 kb on - strand at 648.472 kb on + strand at 648.473 kb on - strand at 648.473 kb on - strand at 648.567 kb on + strand at 648.567 kb on + strand at 648.567 kb on + strand at 648.568 kb on - strand at 648.903 kb on + strand, within Ga0059261_0614 at 648.903 kb on + strand, within Ga0059261_0614 at 648.903 kb on + strand, within Ga0059261_0614 at 648.904 kb on - strand, within Ga0059261_0614 at 648.927 kb on + strand, within Ga0059261_0614 at 648.927 kb on + strand, within Ga0059261_0614 at 648.928 kb on - strand, within Ga0059261_0614 at 648.928 kb on - strand, within Ga0059261_0614 at 648.957 kb on + strand, within Ga0059261_0614 at 648.958 kb on - strand, within Ga0059261_0614 at 649.209 kb on + strand, within Ga0059261_0614 at 649.210 kb on - strand, within Ga0059261_0614 at 649.211 kb on + strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 646,688 + +0.4 646,688 + +0.2 646,688 + -0.0 646,688 + +0.7 646,688 - +0.9 646,689 - -0.2 646,689 - -0.1 646,689 - -0.8 646,699 + +0.2 646,699 + +0.7 646,699 + +0.9 646,699 + +0.2 646,699 + +0.1 646,699 + +0.7 646,700 - +0.2 646,700 - +0.9 646,700 - +0.3 646,724 + +1.9 646,724 + -1.1 646,724 + +1.6 646,725 - -2.1 646,970 + Ga0059261_0612 0.34 +0.2 646,970 + Ga0059261_0612 0.34 +0.3 646,970 + Ga0059261_0612 0.34 +0.6 646,971 - Ga0059261_0612 0.34 -1.1 646,971 - Ga0059261_0612 0.34 -0.1 646,971 - Ga0059261_0612 0.34 +0.9 646,971 - Ga0059261_0612 0.34 -1.6 646,971 - Ga0059261_0612 0.34 -0.3 647,338 + -0.4 648,044 - Ga0059261_0613 0.73 -1.1 648,080 + Ga0059261_0613 0.77 -1.5 648,080 + Ga0059261_0613 0.77 -1.7 648,081 - Ga0059261_0613 0.77 -0.1 648,083 + -0.1 648,083 + Ga0059261_0613 0.77 -2.6 648,083 + Ga0059261_0613 0.77 -0.1 648,083 + Ga0059261_0613 0.77 -1.1 648,083 + -0.1 648,083 + Ga0059261_0613 0.77 -0.1 648,173 + Ga0059261_0613 0.86 -0.7 648,173 + Ga0059261_0613 0.86 -2.1 648,174 - Ga0059261_0613 0.86 -3.6 648,174 - Ga0059261_0613 0.86 -1.9 648,174 - Ga0059261_0613 0.86 -0.7 648,175 + -1.7 648,176 - Ga0059261_0613 0.87 +0.6 648,274 - -0.4 648,472 + +1.6 648,473 - -1.1 648,473 - -0.1 648,567 + -0.7 648,567 + +0.6 648,567 + -0.7 648,568 - +0.4 648,903 + Ga0059261_0614 0.23 +0.4 648,903 + Ga0059261_0614 0.23 +0.0 648,903 + Ga0059261_0614 0.23 +1.7 648,904 - Ga0059261_0614 0.23 +0.6 648,927 + Ga0059261_0614 0.24 -0.0 648,927 + Ga0059261_0614 0.24 +0.7 648,928 - Ga0059261_0614 0.24 -0.0 648,928 - Ga0059261_0614 0.24 +0.7 648,957 + Ga0059261_0614 0.26 -0.6 648,958 - Ga0059261_0614 0.26 +0.3 649,209 + Ga0059261_0614 0.36 -0.4 649,210 - Ga0059261_0614 0.36 +0.5 649,211 + Ga0059261_0614 0.36 -0.0 649,212 - Ga0059261_0614 0.36 -0.4 649,212 - Ga0059261_0614 0.36 -0.2 649,212 - Ga0059261_0614 0.36 +0.1 649,212 - Ga0059261_0614 0.36 -0.3
Or see this region's nucleotide sequence