Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0445

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0443 and Ga0059261_0444 overlap by 4 nucleotidesGa0059261_0444 and Ga0059261_0445 are separated by 3 nucleotidesGa0059261_0445 and Ga0059261_0446 are separated by 276 nucleotides Ga0059261_0443: Ga0059261_0443 - RNA polymerase sigma factor, sigma-70 family, at 429,921 to 430,493 _0443 Ga0059261_0444: Ga0059261_0444 - Heavy-metal resistance, at 430,490 to 430,927 _0444 Ga0059261_0445: Ga0059261_0445 - hypothetical protein, at 430,931 to 431,263 _0445 Ga0059261_0446: Ga0059261_0446 - Outer membrane receptor proteins, mostly Fe transport, at 431,540 to 433,660 _0446 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 429.965 kb on - strandat 429.965 kb on - strandat 430.004 kb on - strand, within Ga0059261_0443at 430.064 kb on + strand, within Ga0059261_0443at 430.064 kb on + strand, within Ga0059261_0443at 430.064 kb on + strand, within Ga0059261_0443at 430.064 kb on + strand, within Ga0059261_0443at 430.065 kb on - strand, within Ga0059261_0443at 430.065 kb on - strand, within Ga0059261_0443at 430.065 kb on - strand, within Ga0059261_0443at 430.095 kb on + strand, within Ga0059261_0443at 430.096 kb on - strand, within Ga0059261_0443at 430.096 kb on - strand, within Ga0059261_0443at 430.309 kb on + strand, within Ga0059261_0443at 430.366 kb on + strandat 430.366 kb on + strand, within Ga0059261_0443at 430.366 kb on + strand, within Ga0059261_0443at 430.367 kb on - strand, within Ga0059261_0443at 430.367 kb on - strand, within Ga0059261_0443at 430.367 kb on - strand, within Ga0059261_0443at 430.384 kb on + strand, within Ga0059261_0443at 430.418 kb on + strand, within Ga0059261_0443at 430.418 kb on + strand, within Ga0059261_0443at 430.419 kb on - strand, within Ga0059261_0443at 430.419 kb on - strand, within Ga0059261_0443at 430.420 kb on + strand, within Ga0059261_0443at 430.420 kb on + strand, within Ga0059261_0443at 430.420 kb on + strand, within Ga0059261_0443at 430.420 kb on + strand, within Ga0059261_0443at 430.420 kb on + strand, within Ga0059261_0443at 430.421 kb on - strand, within Ga0059261_0443at 430.432 kb on + strand, within Ga0059261_0443at 430.432 kb on + strand, within Ga0059261_0443at 430.518 kb on - strandat 430.518 kb on - strandat 430.518 kb on - strandat 430.518 kb on - strandat 430.810 kb on + strand, within Ga0059261_0444at 430.811 kb on - strand, within Ga0059261_0444at 430.893 kb on - strandat 430.893 kb on - strandat 430.893 kb on - strandat 430.907 kb on - strandat 430.907 kb on - strandat 430.907 kb on - strandat 430.912 kb on + strandat 430.912 kb on + strandat 430.932 kb on + strandat 430.932 kb on + strandat 430.933 kb on - strandat 430.933 kb on - strandat 430.985 kb on + strand, within Ga0059261_0445at 431.217 kb on - strand, within Ga0059261_0445at 431.217 kb on - strand, within Ga0059261_0445at 431.227 kb on + strand, within Ga0059261_0445at 431.227 kb on + strand, within Ga0059261_0445at 431.257 kb on + strandat 431.257 kb on + strandat 431.257 kb on + strandat 431.257 kb on + strandat 431.258 kb on - strandat 431.258 kb on - strandat 431.258 kb on - strandat 431.258 kb on - strandat 431.258 kb on - strandat 431.347 kb on + strandat 431.347 kb on + strandat 431.389 kb on + strandat 431.390 kb on - strandat 431.390 kb on - strandat 431.390 kb on - strandat 431.390 kb on - strandat 431.395 kb on + strandat 431.395 kb on + strandat 431.396 kb on - strandat 431.396 kb on - strandat 431.406 kb on + strandat 431.406 kb on + strandat 431.414 kb on + strandat 431.414 kb on + strandat 431.414 kb on + strandat 431.414 kb on + strandat 431.415 kb on - strandat 431.415 kb on - strandat 431.415 kb on - strandat 431.415 kb on - strandat 431.415 kb on - strandat 431.415 kb on - strandat 431.569 kb on + strandat 431.569 kb on + strandat 431.569 kb on + strandat 431.569 kb on + strandat 431.570 kb on - strandat 431.570 kb on - strandat 431.900 kb on + strand, within Ga0059261_0446at 431.901 kb on - strand, within Ga0059261_0446at 431.901 kb on - strand, within Ga0059261_0446at 431.901 kb on - strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.912 kb on + strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.913 kb on - strand, within Ga0059261_0446at 431.915 kb on - strand, within Ga0059261_0446at 431.936 kb on + strand, within Ga0059261_0446at 431.936 kb on + strand, within Ga0059261_0446at 431.936 kb on + strand, within Ga0059261_0446at 431.937 kb on - strand, within Ga0059261_0446at 431.937 kb on - strand, within Ga0059261_0446at 431.944 kb on + strand, within Ga0059261_0446at 431.944 kb on + strand, within Ga0059261_0446at 431.944 kb on + strandat 431.944 kb on + strand, within Ga0059261_0446at 431.944 kb on + strand, within Ga0059261_0446at 431.944 kb on + strand, within Ga0059261_0446at 431.944 kb on + strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 431.945 kb on - strand, within Ga0059261_0446at 432.089 kb on + strand, within Ga0059261_0446at 432.089 kb on + strand, within Ga0059261_0446at 432.089 kb on + strand, within Ga0059261_0446at 432.090 kb on - strand, within Ga0059261_0446at 432.090 kb on - strand, within Ga0059261_0446at 432.090 kb on - strand, within Ga0059261_0446at 432.113 kb on - strand, within Ga0059261_0446at 432.185 kb on + strand, within Ga0059261_0446at 432.185 kb on + strand, within Ga0059261_0446at 432.212 kb on + strand, within Ga0059261_0446

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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429,965 - -1.4
429,965 - -0.1
430,004 - Ga0059261_0443 0.14 +0.3
430,064 + Ga0059261_0443 0.25 -0.8
430,064 + Ga0059261_0443 0.25 +0.5
430,064 + Ga0059261_0443 0.25 +0.5
430,064 + Ga0059261_0443 0.25 -0.4
430,065 - Ga0059261_0443 0.25 -0.3
430,065 - Ga0059261_0443 0.25 -0.2
430,065 - Ga0059261_0443 0.25 +1.1
430,095 + Ga0059261_0443 0.30 +0.2
430,096 - Ga0059261_0443 0.31 -0.2
430,096 - Ga0059261_0443 0.31 +0.0
430,309 + Ga0059261_0443 0.68 -1.2
430,366 + +0.9
430,366 + Ga0059261_0443 0.78 -0.3
430,366 + Ga0059261_0443 0.78 -1.0
430,367 - Ga0059261_0443 0.78 +0.6
430,367 - Ga0059261_0443 0.78 -0.4
430,367 - Ga0059261_0443 0.78 -0.2
430,384 + Ga0059261_0443 0.81 -0.5
430,418 + Ga0059261_0443 0.87 +0.6
430,418 + Ga0059261_0443 0.87 +0.4
430,419 - Ga0059261_0443 0.87 +0.3
430,419 - Ga0059261_0443 0.87 +0.1
430,420 + Ga0059261_0443 0.87 -0.5
430,420 + Ga0059261_0443 0.87 -1.1
430,420 + Ga0059261_0443 0.87 -1.4
430,420 + Ga0059261_0443 0.87 -0.2
430,420 + Ga0059261_0443 0.87 +2.1
430,421 - Ga0059261_0443 0.87 -0.1
430,432 + Ga0059261_0443 0.89 -1.7
430,432 + Ga0059261_0443 0.89 -0.3
430,518 - -1.0
430,518 - +0.3
430,518 - -0.3
430,518 - -0.1
430,810 + Ga0059261_0444 0.73 -0.7
430,811 - Ga0059261_0444 0.73 +0.2
430,893 - +0.9
430,893 - -1.0
430,893 - -0.5
430,907 - -0.8
430,907 - -0.1
430,907 - +0.0
430,912 + -0.2
430,912 + -0.0
430,932 + +0.6
430,932 + -0.0
430,933 - -0.6
430,933 - -0.6
430,985 + Ga0059261_0445 0.16 -0.8
431,217 - Ga0059261_0445 0.86 +0.3
431,217 - Ga0059261_0445 0.86 -0.6
431,227 + Ga0059261_0445 0.89 -0.6
431,227 + Ga0059261_0445 0.89 +0.0
431,257 + +0.1
431,257 + +0.2
431,257 + +0.4
431,257 + +0.6
431,258 - -0.6
431,258 - +0.9
431,258 - -0.2
431,258 - +0.9
431,258 - +1.9
431,347 + -0.0
431,347 + +0.6
431,389 + +1.2
431,390 - +0.4
431,390 - -0.2
431,390 - +0.0
431,390 - +0.1
431,395 + -0.1
431,395 + +0.9
431,396 - -0.4
431,396 - +0.2
431,406 + +0.0
431,406 + -0.7
431,414 + +0.3
431,414 + -0.6
431,414 + -0.4
431,414 + +0.0
431,415 - -0.1
431,415 - -1.4
431,415 - -0.2
431,415 - +1.1
431,415 - -0.7
431,415 - -0.0
431,569 + -0.7
431,569 + +0.2
431,569 + +0.1
431,569 + -1.5
431,570 - +0.2
431,570 - -0.4
431,900 + Ga0059261_0446 0.17 +0.1
431,901 - Ga0059261_0446 0.17 -1.5
431,901 - Ga0059261_0446 0.17 -0.2
431,901 - Ga0059261_0446 0.17 -1.3
431,912 + Ga0059261_0446 0.18 -0.9
431,912 + Ga0059261_0446 0.18 -0.1
431,912 + Ga0059261_0446 0.18 -0.1
431,912 + Ga0059261_0446 0.18 +0.3
431,912 + Ga0059261_0446 0.18 -1.4
431,912 + Ga0059261_0446 0.18 +1.3
431,912 + Ga0059261_0446 0.18 +0.6
431,912 + Ga0059261_0446 0.18 +0.7
431,912 + Ga0059261_0446 0.18 +0.2
431,913 - Ga0059261_0446 0.18 +0.2
431,913 - Ga0059261_0446 0.18 -1.3
431,913 - Ga0059261_0446 0.18 -0.3
431,913 - Ga0059261_0446 0.18 +0.7
431,913 - Ga0059261_0446 0.18 -1.7
431,913 - Ga0059261_0446 0.18 -0.3
431,913 - Ga0059261_0446 0.18 +0.3
431,913 - Ga0059261_0446 0.18 -0.1
431,913 - Ga0059261_0446 0.18 -0.9
431,915 - Ga0059261_0446 0.18 +0.1
431,936 + Ga0059261_0446 0.19 +0.9
431,936 + Ga0059261_0446 0.19 +0.1
431,936 + Ga0059261_0446 0.19 -0.3
431,937 - Ga0059261_0446 0.19 +0.7
431,937 - Ga0059261_0446 0.19 -2.1
431,944 + Ga0059261_0446 0.19 -0.3
431,944 + Ga0059261_0446 0.19 -0.5
431,944 + +1.9
431,944 + Ga0059261_0446 0.19 +0.7
431,944 + Ga0059261_0446 0.19 -0.3
431,944 + Ga0059261_0446 0.19 -0.8
431,944 + Ga0059261_0446 0.19 +0.1
431,945 - Ga0059261_0446 0.19 +0.3
431,945 - Ga0059261_0446 0.19 -0.3
431,945 - Ga0059261_0446 0.19 -0.2
431,945 - Ga0059261_0446 0.19 -0.4
431,945 - Ga0059261_0446 0.19 +0.0
431,945 - Ga0059261_0446 0.19 +0.1
431,945 - Ga0059261_0446 0.19 +0.5
431,945 - Ga0059261_0446 0.19 -0.2
431,945 - Ga0059261_0446 0.19 +0.4
431,945 - Ga0059261_0446 0.19 +1.1
431,945 - Ga0059261_0446 0.19 +0.1
432,089 + Ga0059261_0446 0.26 -0.3
432,089 + Ga0059261_0446 0.26 +0.7
432,089 + Ga0059261_0446 0.26 +0.2
432,090 - Ga0059261_0446 0.26 -0.3
432,090 - Ga0059261_0446 0.26 -0.8
432,090 - Ga0059261_0446 0.26 -0.2
432,113 - Ga0059261_0446 0.27 -0.4
432,185 + Ga0059261_0446 0.30 +0.7
432,185 + Ga0059261_0446 0.30 -0.7
432,212 + Ga0059261_0446 0.32 +0.1

Or see this region's nucleotide sequence