Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0349

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0347 and Ga0059261_0348 are separated by 83 nucleotidesGa0059261_0348 and Ga0059261_0349 are separated by 329 nucleotidesGa0059261_0349 and Ga0059261_0350 are separated by 25 nucleotidesGa0059261_0350 and Ga0059261_0351 overlap by 4 nucleotides Ga0059261_0347: Ga0059261_0347 - CTP synthase (EC 6.3.4.2), at 335,250 to 336,887 _0347 Ga0059261_0348: Ga0059261_0348 - protein translocase, SecG subunit, at 336,971 to 337,333 _0348 Ga0059261_0349: Ga0059261_0349 - MarR family, at 337,663 to 338,022 _0349 Ga0059261_0350: Ga0059261_0350 - Bacterial SH3 domain, at 338,048 to 338,332 _0350 Ga0059261_0351: Ga0059261_0351 - N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data), at 338,329 to 339,261 _0351 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 337.590 kb on + strandat 337.625 kb on + strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.629 kb on + strandat 337.629 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.704 kb on + strand, within Ga0059261_0349at 337.704 kb on + strand, within Ga0059261_0349at 337.705 kb on - strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.777 kb on + strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.860 kb on + strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.880 kb on - strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 338.021 kb on - strandat 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strandat 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.297 kb on + strand, within Ga0059261_0350at 338.298 kb on - strand, within Ga0059261_0350at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.840 kb on - strand, within Ga0059261_0351at 338.935 kb on + strand, within Ga0059261_0351

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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336,973 - -0.5
336,973 - -0.4
336,973 - +1.9
336,973 - +0.4
336,973 - +0.5
337,590 + -0.2
337,625 + +0.1
337,626 - -1.9
337,626 - -1.9
337,626 - +1.5
337,629 + -1.5
337,629 + -0.7
337,688 + -0.7
337,688 + -1.8
337,688 + -2.3
337,690 + -0.5
337,690 + -0.9
337,690 + -1.7
337,690 + -0.7
337,690 + -0.7
337,690 + -0.1
337,690 + -2.4
337,690 + -1.9
337,690 + -1.6
337,691 - -1.1
337,691 - -0.1
337,691 - -3.5
337,691 - -0.9
337,692 + -1.9
337,692 + -2.3
337,692 + -1.4
337,692 + -2.8
337,693 - -0.7
337,693 - -2.1
337,693 - -1.7
337,693 - -0.1
337,693 - -1.1
337,693 - -1.4
337,693 - -0.7
337,704 + Ga0059261_0349 0.11 +0.9
337,704 + Ga0059261_0349 0.11 -0.5
337,705 - Ga0059261_0349 0.12 +0.9
337,717 + Ga0059261_0349 0.15 +0.9
337,717 + Ga0059261_0349 0.15 -0.7
337,717 + Ga0059261_0349 0.15 -2.1
337,777 + Ga0059261_0349 0.32 -1.4
337,778 - Ga0059261_0349 0.32 -2.8
337,778 - Ga0059261_0349 0.32 +0.3
337,860 + Ga0059261_0349 0.55 -1.6
337,861 - Ga0059261_0349 0.55 -0.7
337,861 - Ga0059261_0349 0.55 -1.4
337,880 - Ga0059261_0349 0.60 -1.1
337,932 + Ga0059261_0349 0.75 -0.1
337,932 + Ga0059261_0349 0.75 -0.6
337,933 - Ga0059261_0349 0.75 -1.7
337,933 - Ga0059261_0349 0.75 -3.1
337,933 - Ga0059261_0349 0.75 +1.5
338,021 - -0.7
338,129 + Ga0059261_0350 0.28 -0.9
338,129 + Ga0059261_0350 0.28 -0.6
338,129 + Ga0059261_0350 0.28 -0.9
338,147 + Ga0059261_0350 0.35 +0.2
338,147 + Ga0059261_0350 0.35 +0.6
338,147 + Ga0059261_0350 0.35 +0.4
338,147 + Ga0059261_0350 0.35 -0.2
338,147 + Ga0059261_0350 0.35 +0.4
338,147 + Ga0059261_0350 0.35 -0.2
338,147 + Ga0059261_0350 0.35 +0.4
338,147 + Ga0059261_0350 0.35 -0.5
338,147 + Ga0059261_0350 0.35 +0.1
338,147 + +2.5
338,148 - Ga0059261_0350 0.35 -0.3
338,148 - Ga0059261_0350 0.35 -0.3
338,148 - Ga0059261_0350 0.35 -1.7
338,148 - Ga0059261_0350 0.35 -1.4
338,297 + Ga0059261_0350 0.87 -0.1
338,298 - Ga0059261_0350 0.88 -0.5
338,602 + Ga0059261_0351 0.29 +0.3
338,602 + Ga0059261_0351 0.29 -0.9
338,602 + Ga0059261_0351 0.29 -0.2
338,603 - Ga0059261_0351 0.29 +0.5
338,603 - Ga0059261_0351 0.29 +0.5
338,603 - Ga0059261_0351 0.29 +0.0
338,603 - Ga0059261_0351 0.29 -0.7
338,656 + Ga0059261_0351 0.35 -0.1
338,656 + Ga0059261_0351 0.35 +0.1
338,656 + Ga0059261_0351 0.35 +0.9
338,656 + Ga0059261_0351 0.35 -0.5
338,656 + Ga0059261_0351 0.35 +0.3
338,656 + Ga0059261_0351 0.35 +0.6
338,656 + Ga0059261_0351 0.35 +0.3
338,656 + Ga0059261_0351 0.35 +0.0
338,657 - Ga0059261_0351 0.35 -0.1
338,657 - Ga0059261_0351 0.35 +1.7
338,657 - Ga0059261_0351 0.35 -0.6
338,657 - Ga0059261_0351 0.35 +0.2
338,839 + Ga0059261_0351 0.55 +0.4
338,839 + Ga0059261_0351 0.55 +0.2
338,839 + Ga0059261_0351 0.55 +0.3
338,840 - Ga0059261_0351 0.55 +0.1
338,935 + Ga0059261_0351 0.65 +0.7

Or see this region's nucleotide sequence