Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0258

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0256 and Ga0059261_0257 are separated by 1 nucleotidesGa0059261_0257 and Ga0059261_0258 are separated by 157 nucleotidesGa0059261_0258 and Ga0059261_0259 are separated by 4 nucleotidesGa0059261_0259 and Ga0059261_0260 overlap by 4 nucleotides Ga0059261_0256: Ga0059261_0256 - anthranilate synthase component I, non-proteobacterial lineages, at 246,340 to 247,866 _0256 Ga0059261_0257: Ga0059261_0257 - hypothetical protein, at 247,868 to 248,278 _0257 Ga0059261_0258: Ga0059261_0258 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 248,436 to 250,019 _0258 Ga0059261_0259: Ga0059261_0259 - Uncharacterized conserved protein, at 250,024 to 250,560 _0259 Ga0059261_0260: Ga0059261_0260 - hypothetical protein, at 250,557 to 251,138 _0260 Position (kb) 248 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.453 kb on + strand, within Ga0059261_0256at 247.454 kb on - strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.468 kb on + strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.469 kb on - strand, within Ga0059261_0256at 247.636 kb on + strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.637 kb on - strand, within Ga0059261_0256at 247.654 kb on + strand, within Ga0059261_0256at 247.654 kb on + strand, within Ga0059261_0256at 247.655 kb on - strand, within Ga0059261_0256at 247.771 kb on + strandat 247.771 kb on + strandat 247.771 kb on + strandat 247.772 kb on - strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.864 kb on + strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.865 kb on - strandat 247.869 kb on + strandat 247.869 kb on + strandat 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 247.968 kb on + strand, within Ga0059261_0257at 248.097 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.172 kb on + strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.173 kb on - strand, within Ga0059261_0257at 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.310 kb on + strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.311 kb on - strandat 248.314 kb on + strandat 248.314 kb on + strandat 248.315 kb on - strandat 248.315 kb on - strandat 248.332 kb on + strandat 248.332 kb on + strandat 248.333 kb on - strandat 248.391 kb on + strandat 248.408 kb on + strandat 248.409 kb on - strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.446 kb on + strandat 248.447 kb on - strandat 248.625 kb on + strand, within Ga0059261_0258at 248.625 kb on + strand, within Ga0059261_0258at 248.625 kb on + strand, within Ga0059261_0258at 248.626 kb on - strand, within Ga0059261_0258at 248.626 kb on - strand, within Ga0059261_0258at 248.723 kb on + strand, within Ga0059261_0258at 248.723 kb on + strand, within Ga0059261_0258at 248.885 kb on + strand, within Ga0059261_0258at 249.042 kb on + strand, within Ga0059261_0258at 249.120 kb on + strand, within Ga0059261_0258at 249.342 kb on + strand, within Ga0059261_0258at 249.372 kb on + strand, within Ga0059261_0258at 249.372 kb on + strand, within Ga0059261_0258at 249.417 kb on + strandat 249.417 kb on + strand, within Ga0059261_0258at 249.418 kb on - strand, within Ga0059261_0258at 249.813 kb on + strand, within Ga0059261_0258at 249.814 kb on - strandat 250.098 kb on + strand, within Ga0059261_0259at 250.098 kb on + strand, within Ga0059261_0259at 250.098 kb on + strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strandat 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.230 kb on - strand, within Ga0059261_0259at 250.230 kb on - strand, within Ga0059261_0259at 250.306 kb on - strand, within Ga0059261_0259at 250.379 kb on + strand, within Ga0059261_0259at 250.474 kb on + strand, within Ga0059261_0259at 250.474 kb on + strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.533 kb on + strandat 250.533 kb on + strandat 250.533 kb on + strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.582 kb on + strandat 250.582 kb on + strandat 250.582 kb on + strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.754 kb on - strand, within Ga0059261_0260at 250.754 kb on - strand, within Ga0059261_0260at 250.754 kb on - strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.849 kb on + strand, within Ga0059261_0260at 250.849 kb on + strandat 250.850 kb on - strand, within Ga0059261_0260at 250.850 kb on - strand, within Ga0059261_0260at 250.974 kb on + strand, within Ga0059261_0260at 250.974 kb on + strand, within Ga0059261_0260at 251.012 kb on - strand, within Ga0059261_0260at 251.012 kb on - strand, within Ga0059261_0260

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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247,453 + Ga0059261_0256 0.73 -0.3
247,453 + Ga0059261_0256 0.73 +0.6
247,453 + Ga0059261_0256 0.73 -1.2
247,453 + Ga0059261_0256 0.73 -0.2
247,453 + Ga0059261_0256 0.73 -0.4
247,454 - Ga0059261_0256 0.73 -0.2
247,468 + Ga0059261_0256 0.74 +0.4
247,468 + Ga0059261_0256 0.74 -0.0
247,468 + Ga0059261_0256 0.74 +0.5
247,469 - Ga0059261_0256 0.74 +0.1
247,469 - Ga0059261_0256 0.74 -2.5
247,469 - Ga0059261_0256 0.74 -0.3
247,469 - Ga0059261_0256 0.74 +0.3
247,636 + Ga0059261_0256 0.85 +0.1
247,637 - Ga0059261_0256 0.85 +0.0
247,637 - Ga0059261_0256 0.85 +0.5
247,637 - Ga0059261_0256 0.85 +0.2
247,637 - Ga0059261_0256 0.85 +1.5
247,654 + Ga0059261_0256 0.86 -0.7
247,654 + Ga0059261_0256 0.86 +1.2
247,655 - Ga0059261_0256 0.86 +0.1
247,771 + -1.0
247,771 + +0.1
247,771 + -1.1
247,772 - -0.4
247,864 + -0.4
247,864 + -0.3
247,864 + -0.4
247,864 + -0.5
247,865 - -0.4
247,865 - -0.3
247,865 - +0.6
247,865 - +0.4
247,865 - +1.9
247,869 + +0.1
247,869 + -2.3
247,968 + Ga0059261_0257 0.24 -0.2
247,968 + Ga0059261_0257 0.24 -0.3
247,968 + Ga0059261_0257 0.24 -0.1
247,968 + Ga0059261_0257 0.24 -0.4
247,968 + Ga0059261_0257 0.24 -0.6
247,968 + Ga0059261_0257 0.24 +0.3
248,097 + Ga0059261_0257 0.56 +0.0
248,172 + Ga0059261_0257 0.74 -0.2
248,172 + Ga0059261_0257 0.74 -0.0
248,172 + Ga0059261_0257 0.74 +0.1
248,172 + Ga0059261_0257 0.74 +1.2
248,173 - Ga0059261_0257 0.74 -0.7
248,173 - Ga0059261_0257 0.74 -0.7
248,173 - Ga0059261_0257 0.74 -0.8
248,310 + -1.0
248,310 + +0.1
248,310 + +0.3
248,310 + -0.8
248,310 + +0.3
248,310 + -0.0
248,310 + -0.0
248,310 + -0.1
248,310 + -0.4
248,310 + -0.7
248,310 + +0.2
248,310 + -0.1
248,310 + -0.0
248,310 + +0.1
248,310 + +0.4
248,310 + +0.0
248,310 + -0.7
248,311 - -0.4
248,311 - -0.4
248,311 - +0.0
248,311 - -1.1
248,311 - +0.3
248,311 - +0.1
248,314 + -0.5
248,314 + -0.1
248,315 - +0.2
248,315 - +0.7
248,332 + +0.3
248,332 + -0.4
248,333 - +0.1
248,391 + -0.3
248,408 + +0.1
248,409 - -0.3
248,446 + -0.5
248,446 + +0.0
248,446 + -0.1
248,446 + -1.0
248,447 - -0.5
248,625 + Ga0059261_0258 0.12 -0.9
248,625 + Ga0059261_0258 0.12 +0.1
248,625 + Ga0059261_0258 0.12 -0.7
248,626 - Ga0059261_0258 0.12 -0.3
248,626 - Ga0059261_0258 0.12 +0.2
248,723 + Ga0059261_0258 0.18 -0.7
248,723 + Ga0059261_0258 0.18 -0.7
248,885 + Ga0059261_0258 0.28 -0.6
249,042 + Ga0059261_0258 0.38 -0.5
249,120 + Ga0059261_0258 0.43 +0.3
249,342 + Ga0059261_0258 0.57 +0.1
249,372 + Ga0059261_0258 0.59 -0.1
249,372 + Ga0059261_0258 0.59 +1.7
249,417 + +0.3
249,417 + Ga0059261_0258 0.62 -0.6
249,418 - Ga0059261_0258 0.62 -0.9
249,813 + Ga0059261_0258 0.87 -0.3
249,814 - -1.5
250,098 + Ga0059261_0259 0.14 +0.9
250,098 + Ga0059261_0259 0.14 -0.6
250,098 + Ga0059261_0259 0.14 -1.1
250,099 - Ga0059261_0259 0.14 -0.1
250,099 - +1.9
250,099 - Ga0059261_0259 0.14 -0.6
250,099 - Ga0059261_0259 0.14 +0.5
250,099 - Ga0059261_0259 0.14 +0.8
250,103 + Ga0059261_0259 0.15 -0.9
250,103 + Ga0059261_0259 0.15 -0.8
250,103 + Ga0059261_0259 0.15 -0.3
250,104 - Ga0059261_0259 0.15 -0.3
250,104 - Ga0059261_0259 0.15 +0.1
250,104 - Ga0059261_0259 0.15 +0.3
250,104 - Ga0059261_0259 0.15 +0.6
250,104 - Ga0059261_0259 0.15 +0.1
250,229 + Ga0059261_0259 0.38 -0.3
250,229 + Ga0059261_0259 0.38 +0.4
250,229 + Ga0059261_0259 0.38 +0.0
250,229 + Ga0059261_0259 0.38 +0.5
250,229 + Ga0059261_0259 0.38 +0.1
250,229 + Ga0059261_0259 0.38 +0.0
250,230 - Ga0059261_0259 0.38 -0.1
250,230 - Ga0059261_0259 0.38 -0.0
250,306 - Ga0059261_0259 0.53 +0.1
250,379 + Ga0059261_0259 0.66 -0.7
250,474 + Ga0059261_0259 0.84 -1.4
250,474 + Ga0059261_0259 0.84 +0.1
250,475 - Ga0059261_0259 0.84 -0.5
250,475 - Ga0059261_0259 0.84 +0.2
250,475 - Ga0059261_0259 0.84 +0.4
250,475 - Ga0059261_0259 0.84 +0.8
250,533 + -0.1
250,533 + +0.2
250,533 + -0.0
250,534 - -0.2
250,534 - +0.4
250,534 - +0.1
250,534 - -1.1
250,582 + -0.2
250,582 + -0.4
250,582 + +0.7
250,583 - -0.1
250,583 - +0.2
250,583 - +0.1
250,583 - -0.4
250,754 - Ga0059261_0260 0.34 +0.2
250,754 - Ga0059261_0260 0.34 -0.1
250,754 - Ga0059261_0260 0.34 +1.1
250,795 + Ga0059261_0260 0.41 -0.1
250,795 + Ga0059261_0260 0.41 -0.4
250,795 + Ga0059261_0260 0.41 +0.3
250,795 + Ga0059261_0260 0.41 -0.4
250,796 - Ga0059261_0260 0.41 -0.2
250,796 - Ga0059261_0260 0.41 -0.4
250,796 - Ga0059261_0260 0.41 +0.3
250,796 - Ga0059261_0260 0.41 -0.9
250,796 - Ga0059261_0260 0.41 +0.9
250,796 - Ga0059261_0260 0.41 +0.3
250,796 - Ga0059261_0260 0.41 +0.2
250,849 + Ga0059261_0260 0.50 +0.5
250,849 + -0.1
250,850 - Ga0059261_0260 0.50 +0.5
250,850 - Ga0059261_0260 0.50 +0.9
250,974 + Ga0059261_0260 0.72 -0.3
250,974 + Ga0059261_0260 0.72 +0.2
251,012 - Ga0059261_0260 0.78 -0.5
251,012 - Ga0059261_0260 0.78 -0.9

Or see this region's nucleotide sequence