Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0246

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0245 and Ga0059261_0246 overlap by 4 nucleotidesGa0059261_0246 and Ga0059261_0247 overlap by 4 nucleotides Ga0059261_0245: Ga0059261_0245 - pseudouridine synthase, at 235,174 to 236,376 _0245 Ga0059261_0246: Ga0059261_0246 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 236,373 to 236,909 _0246 Ga0059261_0247: Ga0059261_0247 - Arabinose efflux permease, at 236,906 to 238,168 _0247 Position (kb) 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 235.466 kb on - strand, within Ga0059261_0245at 235.607 kb on - strand, within Ga0059261_0245at 235.621 kb on + strand, within Ga0059261_0245at 235.687 kb on + strand, within Ga0059261_0245at 236.370 kb on + strandat 236.370 kb on + strandat 236.370 kb on + strandat 236.371 kb on - strandat 236.371 kb on - strandat 236.371 kb on - strandat 236.730 kb on + strand, within Ga0059261_0246at 236.731 kb on - strand, within Ga0059261_0246at 236.731 kb on - strand, within Ga0059261_0246at 236.974 kb on - strandat 236.974 kb on - strandat 236.974 kb on - strandat 237.082 kb on + strand, within Ga0059261_0247at 237.083 kb on - strand, within Ga0059261_0247at 237.084 kb on + strand, within Ga0059261_0247at 237.084 kb on + strand, within Ga0059261_0247at 237.085 kb on - strand, within Ga0059261_0247at 237.135 kb on + strand, within Ga0059261_0247at 237.136 kb on - strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.304 kb on - strand, within Ga0059261_0247at 237.304 kb on - strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strandat 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strandat 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strandat 237.417 kb on + strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
235,466 - Ga0059261_0245 0.24 +0.1
235,607 - Ga0059261_0245 0.36 -1.1
235,621 + Ga0059261_0245 0.37 -0.3
235,687 + Ga0059261_0245 0.43 -0.5
236,370 + -2.5
236,370 + -0.3
236,370 + +0.9
236,371 - -0.9
236,371 - +0.2
236,371 - +0.3
236,730 + Ga0059261_0246 0.66 -0.5
236,731 - Ga0059261_0246 0.67 +1.5
236,731 - Ga0059261_0246 0.67 -0.5
236,974 - +0.7
236,974 - +0.3
236,974 - -0.0
237,082 + Ga0059261_0247 0.14 +0.6
237,083 - Ga0059261_0247 0.14 -0.5
237,084 + Ga0059261_0247 0.14 +1.5
237,084 + Ga0059261_0247 0.14 -0.2
237,085 - Ga0059261_0247 0.14 -0.5
237,135 + Ga0059261_0247 0.18 +0.0
237,136 - Ga0059261_0247 0.18 +0.5
237,273 + Ga0059261_0247 0.29 +0.1
237,273 + Ga0059261_0247 0.29 +0.2
237,273 + Ga0059261_0247 0.29 -0.1
237,273 + Ga0059261_0247 0.29 -0.2
237,273 + Ga0059261_0247 0.29 -0.3
237,274 - Ga0059261_0247 0.29 -0.6
237,274 - Ga0059261_0247 0.29 -1.0
237,274 - Ga0059261_0247 0.29 +1.9
237,274 - Ga0059261_0247 0.29 -0.1
237,303 + Ga0059261_0247 0.31 -0.9
237,303 + Ga0059261_0247 0.31 +0.3
237,303 + Ga0059261_0247 0.31 +0.3
237,303 + Ga0059261_0247 0.31 +0.5
237,303 + Ga0059261_0247 0.31 -1.1
237,303 + Ga0059261_0247 0.31 -0.4
237,303 + Ga0059261_0247 0.31 +0.0
237,303 + Ga0059261_0247 0.31 +0.7
237,304 - Ga0059261_0247 0.32 +0.3
237,304 - Ga0059261_0247 0.32 -0.3
237,412 + Ga0059261_0247 0.40 +0.6
237,412 + Ga0059261_0247 0.40 +0.1
237,412 + Ga0059261_0247 0.40 -0.8
237,412 + Ga0059261_0247 0.40 -0.3
237,413 - Ga0059261_0247 0.40 -0.5
237,413 - Ga0059261_0247 0.40 -0.0
237,413 - +1.6
237,413 - Ga0059261_0247 0.40 +0.1
237,413 - Ga0059261_0247 0.40 +0.2
237,413 - Ga0059261_0247 0.40 +0.7
237,414 + Ga0059261_0247 0.40 -0.1
237,414 + Ga0059261_0247 0.40 +2.5
237,414 + Ga0059261_0247 0.40 +0.4
237,414 + Ga0059261_0247 0.40 +0.4
237,414 + Ga0059261_0247 0.40 -0.6
237,414 + Ga0059261_0247 0.40 -0.2
237,414 + Ga0059261_0247 0.40 -0.9
237,414 + Ga0059261_0247 0.40 -0.8
237,415 - Ga0059261_0247 0.40 +1.5
237,415 - Ga0059261_0247 0.40 -1.0
237,415 - Ga0059261_0247 0.40 +0.8
237,415 - Ga0059261_0247 0.40 -0.1
237,415 - Ga0059261_0247 0.40 -0.1
237,417 + Ga0059261_0247 0.40 -0.5
237,417 + Ga0059261_0247 0.40 +0.2
237,417 + Ga0059261_0247 0.40 +0.1
237,417 + +1.5
237,417 + Ga0059261_0247 0.40 +0.2
237,417 + Ga0059261_0247 0.40 +0.5
237,417 + Ga0059261_0247 0.40 +0.1
237,417 + Ga0059261_0247 0.40 +0.5
237,417 + Ga0059261_0247 0.40 +0.1
237,417 + +0.9
237,417 + Ga0059261_0247 0.40 +2.5
237,418 - Ga0059261_0247 0.41 +0.2
237,418 - Ga0059261_0247 0.41 +1.1
237,418 - Ga0059261_0247 0.41 -0.3
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 +0.4
237,418 - Ga0059261_0247 0.41 -0.1
237,418 - Ga0059261_0247 0.41 +0.1
237,418 - Ga0059261_0247 0.41 +0.5
237,418 - Ga0059261_0247 0.41 +1.9
237,418 - Ga0059261_0247 0.41 -0.0
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 +0.5
237,418 - Ga0059261_0247 0.41 +0.3
237,418 - Ga0059261_0247 0.41 +0.9
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 -1.2
237,418 - Ga0059261_0247 0.41 -0.3
237,418 - Ga0059261_0247 0.41 -1.1
237,418 - Ga0059261_0247 0.41 +0.5
237,858 + Ga0059261_0247 0.75 -0.3
237,858 + Ga0059261_0247 0.75 -0.7
237,858 + Ga0059261_0247 0.75 -0.1
237,858 + Ga0059261_0247 0.75 +0.1
237,858 + Ga0059261_0247 0.75 -0.5
237,858 + Ga0059261_0247 0.75 -0.8
237,858 + Ga0059261_0247 0.75 -1.1
237,859 - Ga0059261_0247 0.75 +0.1
237,859 - Ga0059261_0247 0.75 +0.3

Or see this region's nucleotide sequence