Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0243 and Ga0059261_0244 are separated by 59 nucleotides Ga0059261_0244 and Ga0059261_0245 are separated by 104 nucleotides Ga0059261_0245 and Ga0059261_0246 overlap by 4 nucleotides Ga0059261_0246 and Ga0059261_0247 overlap by 4 nucleotides
Ga0059261_0243: Ga0059261_0243 - Major Facilitator Superfamily, at 232,905 to 234,578
_0243
Ga0059261_0244: Ga0059261_0244 - FOG: CheY-like receiver, at 234,638 to 235,069
_0244
Ga0059261_0245: Ga0059261_0245 - pseudouridine synthase, at 235,174 to 236,376
_0245
Ga0059261_0246: Ga0059261_0246 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 236,373 to 236,909
_0246
Ga0059261_0247: Ga0059261_0247 - Arabinose efflux permease, at 236,906 to 238,168
_0247
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.370 kb on + strand, within Ga0059261_0243 at 234.370 kb on + strand at 234.370 kb on + strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.520 kb on + strand at 234.611 kb on - strand at 234.747 kb on + strand, within Ga0059261_0244 at 234.747 kb on + strand, within Ga0059261_0244 at 234.965 kb on - strand, within Ga0059261_0244 at 235.086 kb on + strand at 235.086 kb on + strand at 235.086 kb on + strand at 235.087 kb on - strand at 235.105 kb on - strand at 235.105 kb on - strand at 235.161 kb on + strand at 235.162 kb on - strand at 235.466 kb on - strand, within Ga0059261_0245 at 235.607 kb on - strand, within Ga0059261_0245 at 235.621 kb on + strand, within Ga0059261_0245 at 235.687 kb on + strand, within Ga0059261_0245 at 236.370 kb on + strand at 236.370 kb on + strand at 236.370 kb on + strand at 236.371 kb on - strand at 236.371 kb on - strand at 236.371 kb on - strand at 236.730 kb on + strand, within Ga0059261_0246 at 236.731 kb on - strand, within Ga0059261_0246 at 236.731 kb on - strand, within Ga0059261_0246 at 236.974 kb on - strand at 236.974 kb on - strand at 236.974 kb on - strand at 237.082 kb on + strand, within Ga0059261_0247 at 237.083 kb on - strand, within Ga0059261_0247 at 237.084 kb on + strand, within Ga0059261_0247 at 237.084 kb on + strand, within Ga0059261_0247 at 237.085 kb on - strand, within Ga0059261_0247 at 237.135 kb on + strand, within Ga0059261_0247 at 237.136 kb on - strand, within Ga0059261_0247 at 237.273 kb on + strand, within Ga0059261_0247 at 237.273 kb on + strand, within Ga0059261_0247 at 237.273 kb on + strand, within Ga0059261_0247 at 237.273 kb on + strand, within Ga0059261_0247 at 237.273 kb on + strand, within Ga0059261_0247 at 237.274 kb on - strand, within Ga0059261_0247 at 237.274 kb on - strand, within Ga0059261_0247 at 237.274 kb on - strand, within Ga0059261_0247 at 237.274 kb on - strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.303 kb on + strand, within Ga0059261_0247 at 237.304 kb on - strand, within Ga0059261_0247 at 237.304 kb on - strand, within Ga0059261_0247
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 234,370 + Ga0059261_0243 0.88 -0.4 234,370 + -0.7 234,370 + Ga0059261_0243 0.88 +0.1 234,371 - Ga0059261_0243 0.88 -1.0 234,371 - +0.9 234,371 - Ga0059261_0243 0.88 +0.9 234,371 - Ga0059261_0243 0.88 -0.5 234,410 + Ga0059261_0243 0.90 +0.1 234,410 + Ga0059261_0243 0.90 +0.1 234,410 + Ga0059261_0243 0.90 -0.4 234,411 - +0.9 234,411 - +0.4 234,411 - -0.2 234,411 - -1.4 234,520 + -0.5 234,611 - +0.5 234,747 + Ga0059261_0244 0.25 +0.1 234,747 + Ga0059261_0244 0.25 +0.2 234,965 - Ga0059261_0244 0.76 +1.0 235,086 + +0.0 235,086 + +1.1 235,086 + -0.0 235,087 - -0.1 235,105 - +0.8 235,105 - -0.0 235,161 + +0.9 235,162 - +0.2 235,466 - Ga0059261_0245 0.24 +0.1 235,607 - Ga0059261_0245 0.36 -1.1 235,621 + Ga0059261_0245 0.37 -0.3 235,687 + Ga0059261_0245 0.43 -0.5 236,370 + -2.5 236,370 + -0.3 236,370 + +0.9 236,371 - -0.9 236,371 - +0.2 236,371 - +0.3 236,730 + Ga0059261_0246 0.66 -0.5 236,731 - Ga0059261_0246 0.67 +1.5 236,731 - Ga0059261_0246 0.67 -0.5 236,974 - +0.7 236,974 - +0.3 236,974 - -0.0 237,082 + Ga0059261_0247 0.14 +0.6 237,083 - Ga0059261_0247 0.14 -0.5 237,084 + Ga0059261_0247 0.14 +1.5 237,084 + Ga0059261_0247 0.14 -0.2 237,085 - Ga0059261_0247 0.14 -0.5 237,135 + Ga0059261_0247 0.18 +0.0 237,136 - Ga0059261_0247 0.18 +0.5 237,273 + Ga0059261_0247 0.29 +0.1 237,273 + Ga0059261_0247 0.29 +0.2 237,273 + Ga0059261_0247 0.29 -0.1 237,273 + Ga0059261_0247 0.29 -0.2 237,273 + Ga0059261_0247 0.29 -0.3 237,274 - Ga0059261_0247 0.29 -0.6 237,274 - Ga0059261_0247 0.29 -1.0 237,274 - Ga0059261_0247 0.29 +1.9 237,274 - Ga0059261_0247 0.29 -0.1 237,303 + Ga0059261_0247 0.31 -0.9 237,303 + Ga0059261_0247 0.31 +0.3 237,303 + Ga0059261_0247 0.31 +0.3 237,303 + Ga0059261_0247 0.31 +0.5 237,303 + Ga0059261_0247 0.31 -1.1 237,303 + Ga0059261_0247 0.31 -0.4 237,303 + Ga0059261_0247 0.31 +0.0 237,303 + Ga0059261_0247 0.31 +0.7 237,304 - Ga0059261_0247 0.32 +0.3 237,304 - Ga0059261_0247 0.32 -0.3
Or see this region's nucleotide sequence