Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0211

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0210 and Ga0059261_0211 are separated by 72 nucleotidesGa0059261_0211 and Ga0059261_0212 overlap by 8 nucleotidesGa0059261_0212 and Ga0059261_0213 are separated by 48 nucleotides Ga0059261_0210: Ga0059261_0210 - Predicted metalloendopeptidase, at 197,362 to 199,410 _0210 Ga0059261_0211: Ga0059261_0211 - Uncharacterized protein conserved in bacteria, at 199,483 to 200,055 _0211 Ga0059261_0212: Ga0059261_0212 - SsrA-binding protein, at 200,048 to 200,530 _0212 Ga0059261_0213: Ga0059261_0213 - 4-hydroxy-tetrahydrodipicolinate synthase, at 200,579 to 201,460 _0213 Position (kb) 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2 3at 198.584 kb on - strand, within Ga0059261_0210at 198.584 kb on - strand, within Ga0059261_0210at 198.642 kb on + strandat 198.642 kb on + strand, within Ga0059261_0210at 198.642 kb on + strand, within Ga0059261_0210at 198.642 kb on + strand, within Ga0059261_0210at 198.642 kb on + strand, within Ga0059261_0210at 198.642 kb on + strand, within Ga0059261_0210at 198.642 kb on + strand, within Ga0059261_0210at 198.643 kb on - strandat 198.643 kb on - strand, within Ga0059261_0210at 198.643 kb on - strand, within Ga0059261_0210at 198.643 kb on - strand, within Ga0059261_0210at 198.643 kb on - strand, within Ga0059261_0210at 198.648 kb on - strand, within Ga0059261_0210at 198.648 kb on - strand, within Ga0059261_0210at 198.719 kb on - strand, within Ga0059261_0210at 198.719 kb on - strand, within Ga0059261_0210at 198.788 kb on + strand, within Ga0059261_0210at 198.788 kb on + strand, within Ga0059261_0210at 198.789 kb on - strand, within Ga0059261_0210at 198.789 kb on - strand, within Ga0059261_0210at 198.789 kb on - strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.830 kb on + strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.831 kb on - strand, within Ga0059261_0210at 198.866 kb on + strandat 198.866 kb on + strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.867 kb on - strand, within Ga0059261_0210at 198.875 kb on + strandat 198.875 kb on + strand, within Ga0059261_0210at 198.875 kb on + strand, within Ga0059261_0210at 198.875 kb on + strand, within Ga0059261_0210at 198.875 kb on + strandat 198.875 kb on + strand, within Ga0059261_0210at 198.875 kb on + strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.876 kb on - strand, within Ga0059261_0210at 198.881 kb on + strand, within Ga0059261_0210at 198.881 kb on + strand, within Ga0059261_0210at 198.881 kb on + strand, within Ga0059261_0210at 198.881 kb on + strand, within Ga0059261_0210at 198.914 kb on + strand, within Ga0059261_0210at 198.914 kb on + strand, within Ga0059261_0210at 198.915 kb on - strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.061 kb on + strand, within Ga0059261_0210at 199.062 kb on - strand, within Ga0059261_0210at 199.062 kb on - strand, within Ga0059261_0210at 199.062 kb on - strand, within Ga0059261_0210at 199.068 kb on + strand, within Ga0059261_0210at 199.068 kb on + strand, within Ga0059261_0210at 199.069 kb on - strand, within Ga0059261_0210at 199.069 kb on - strand, within Ga0059261_0210at 199.069 kb on - strand, within Ga0059261_0210at 199.069 kb on - strand, within Ga0059261_0210at 199.069 kb on - strand, within Ga0059261_0210at 199.070 kb on + strand, within Ga0059261_0210at 199.071 kb on - strandat 199.071 kb on - strand, within Ga0059261_0210at 199.071 kb on - strandat 199.169 kb on + strand, within Ga0059261_0210at 199.169 kb on + strand, within Ga0059261_0210at 199.169 kb on + strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.170 kb on - strand, within Ga0059261_0210at 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.419 kb on + strandat 199.420 kb on - strandat 199.420 kb on - strandat 199.420 kb on - strandat 199.420 kb on - strandat 199.420 kb on - strandat 199.461 kb on - strandat 199.484 kb on + strandat 199.484 kb on + strandat 199.484 kb on + strandat 199.485 kb on - strandat 199.485 kb on - strandat 199.574 kb on + strand, within Ga0059261_0211at 199.574 kb on + strand, within Ga0059261_0211at 199.574 kb on + strand, within Ga0059261_0211at 199.574 kb on + strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.575 kb on - strand, within Ga0059261_0211at 199.739 kb on + strand, within Ga0059261_0211at 199.740 kb on - strand, within Ga0059261_0211at 200.584 kb on + strandat 200.585 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
198,584 - Ga0059261_0210 0.60 -0.2
198,584 - Ga0059261_0210 0.60 +0.1
198,642 + +1.3
198,642 + Ga0059261_0210 0.62 +1.0
198,642 + Ga0059261_0210 0.62 -1.0
198,642 + Ga0059261_0210 0.62 +0.1
198,642 + Ga0059261_0210 0.62 +0.1
198,642 + Ga0059261_0210 0.62 -0.1
198,642 + Ga0059261_0210 0.62 +1.5
198,643 - -0.1
198,643 - Ga0059261_0210 0.63 +0.5
198,643 - Ga0059261_0210 0.63 +0.9
198,643 - Ga0059261_0210 0.63 -0.2
198,643 - Ga0059261_0210 0.63 -1.1
198,648 - Ga0059261_0210 0.63 -0.1
198,648 - Ga0059261_0210 0.63 +0.6
198,719 - Ga0059261_0210 0.66 -0.2
198,719 - Ga0059261_0210 0.66 +0.2
198,788 + Ga0059261_0210 0.70 -0.4
198,788 + Ga0059261_0210 0.70 +0.3
198,789 - Ga0059261_0210 0.70 -0.4
198,789 - Ga0059261_0210 0.70 +0.8
198,789 - Ga0059261_0210 0.70 +0.5
198,830 + Ga0059261_0210 0.72 +0.3
198,830 + Ga0059261_0210 0.72 +0.5
198,830 + Ga0059261_0210 0.72 -1.1
198,830 + Ga0059261_0210 0.72 -0.3
198,830 + Ga0059261_0210 0.72 +0.2
198,830 + Ga0059261_0210 0.72 +1.9
198,830 + Ga0059261_0210 0.72 +0.5
198,830 + Ga0059261_0210 0.72 -1.8
198,830 + Ga0059261_0210 0.72 +0.4
198,830 + Ga0059261_0210 0.72 -1.1
198,831 - Ga0059261_0210 0.72 -0.0
198,831 - Ga0059261_0210 0.72 +0.5
198,831 - Ga0059261_0210 0.72 +0.1
198,831 - Ga0059261_0210 0.72 -0.9
198,831 - Ga0059261_0210 0.72 -0.5
198,831 - Ga0059261_0210 0.72 -0.5
198,831 - Ga0059261_0210 0.72 -0.2
198,831 - Ga0059261_0210 0.72 +0.3
198,866 + -0.7
198,866 + Ga0059261_0210 0.73 +0.6
198,867 - Ga0059261_0210 0.73 +0.5
198,867 - Ga0059261_0210 0.73 -0.1
198,867 - Ga0059261_0210 0.73 +0.4
198,867 - Ga0059261_0210 0.73 +0.5
198,867 - Ga0059261_0210 0.73 -0.0
198,867 - Ga0059261_0210 0.73 -0.4
198,867 - Ga0059261_0210 0.73 -0.3
198,867 - Ga0059261_0210 0.73 -1.9
198,867 - Ga0059261_0210 0.73 -0.1
198,867 - Ga0059261_0210 0.73 -0.1
198,867 - Ga0059261_0210 0.73 +0.1
198,875 + -0.1
198,875 + Ga0059261_0210 0.74 +0.5
198,875 + Ga0059261_0210 0.74 -0.3
198,875 + Ga0059261_0210 0.74 -1.3
198,875 + +1.4
198,875 + Ga0059261_0210 0.74 -0.0
198,875 + Ga0059261_0210 0.74 -0.6
198,876 - Ga0059261_0210 0.74 -0.0
198,876 - Ga0059261_0210 0.74 +2.2
198,876 - Ga0059261_0210 0.74 -0.7
198,876 - Ga0059261_0210 0.74 -0.4
198,876 - Ga0059261_0210 0.74 +0.7
198,876 - Ga0059261_0210 0.74 -0.5
198,876 - Ga0059261_0210 0.74 -0.1
198,876 - Ga0059261_0210 0.74 +0.5
198,876 - Ga0059261_0210 0.74 +0.3
198,876 - Ga0059261_0210 0.74 -0.2
198,876 - Ga0059261_0210 0.74 -0.2
198,881 + Ga0059261_0210 0.74 +0.3
198,881 + Ga0059261_0210 0.74 +0.4
198,881 + Ga0059261_0210 0.74 -0.8
198,881 + Ga0059261_0210 0.74 +0.0
198,914 + Ga0059261_0210 0.76 +0.5
198,914 + Ga0059261_0210 0.76 -1.1
198,915 - Ga0059261_0210 0.76 -0.1
199,061 + Ga0059261_0210 0.83 -0.1
199,061 + Ga0059261_0210 0.83 +0.4
199,061 + Ga0059261_0210 0.83 -0.2
199,061 + Ga0059261_0210 0.83 -1.1
199,061 + Ga0059261_0210 0.83 +0.1
199,061 + Ga0059261_0210 0.83 -0.6
199,061 + Ga0059261_0210 0.83 +0.1
199,062 - Ga0059261_0210 0.83 -0.0
199,062 - Ga0059261_0210 0.83 -0.2
199,062 - Ga0059261_0210 0.83 +0.2
199,068 + Ga0059261_0210 0.83 -0.6
199,068 + Ga0059261_0210 0.83 +0.6
199,069 - Ga0059261_0210 0.83 +0.3
199,069 - Ga0059261_0210 0.83 -0.3
199,069 - Ga0059261_0210 0.83 -1.0
199,069 - Ga0059261_0210 0.83 +0.9
199,069 - Ga0059261_0210 0.83 +0.6
199,070 + Ga0059261_0210 0.83 +0.4
199,071 - +2.9
199,071 - Ga0059261_0210 0.83 -0.0
199,071 - +0.9
199,169 + Ga0059261_0210 0.88 -1.0
199,169 + Ga0059261_0210 0.88 +0.5
199,169 + Ga0059261_0210 0.88 +0.3
199,170 - Ga0059261_0210 0.88 -1.0
199,170 - Ga0059261_0210 0.88 +0.5
199,170 - Ga0059261_0210 0.88 -2.3
199,170 - Ga0059261_0210 0.88 +1.1
199,170 - Ga0059261_0210 0.88 +0.1
199,170 - Ga0059261_0210 0.88 +0.1
199,170 - Ga0059261_0210 0.88 +0.3
199,170 - Ga0059261_0210 0.88 -0.5
199,229 + -0.0
199,229 + -0.7
199,229 + -0.0
199,229 + -0.1
199,229 + +0.0
199,229 + -0.0
199,229 + -0.3
199,229 + -0.2
199,230 - +0.5
199,230 - -0.5
199,230 - -0.6
199,419 + -0.3
199,419 + +0.9
199,419 + +0.5
199,419 + -0.1
199,419 + +0.4
199,419 + -0.8
199,419 + -0.7
199,420 - -1.4
199,420 - -0.5
199,420 - -0.0
199,420 - -0.1
199,420 - +0.9
199,461 - +0.2
199,484 + -0.6
199,484 + -0.7
199,484 + -0.4
199,485 - +0.3
199,485 - -0.1
199,574 + Ga0059261_0211 0.16 -0.2
199,574 + Ga0059261_0211 0.16 +0.4
199,574 + Ga0059261_0211 0.16 -0.5
199,574 + Ga0059261_0211 0.16 +0.4
199,575 - Ga0059261_0211 0.16 -1.3
199,575 - Ga0059261_0211 0.16 -1.5
199,575 - Ga0059261_0211 0.16 -1.0
199,575 - Ga0059261_0211 0.16 -0.1
199,575 - Ga0059261_0211 0.16 -0.7
199,575 - Ga0059261_0211 0.16 +0.4
199,575 - Ga0059261_0211 0.16 -0.7
199,739 + Ga0059261_0211 0.45 -0.5
199,740 - Ga0059261_0211 0.45 -0.3
200,584 + -1.9
200,585 - -0.1

Or see this region's nucleotide sequence