Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0170

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0168 and Ga0059261_0169 are separated by 2 nucleotidesGa0059261_0169 and Ga0059261_0170 overlap by 4 nucleotidesGa0059261_0170 and Ga0059261_0171 overlap by 4 nucleotidesGa0059261_0171 and Ga0059261_0172 overlap by 4 nucleotides Ga0059261_0168: Ga0059261_0168 - cytidylate kinase, at 155,606 to 156,247 _0168 Ga0059261_0169: Ga0059261_0169 - hypothetical protein, at 156,250 to 156,900 _0169 Ga0059261_0170: Ga0059261_0170 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 156,897 to 157,274 _0170 Ga0059261_0171: Ga0059261_0171 - Thiol-disulfide isomerase and thioredoxins, at 157,271 to 157,798 _0171 Ga0059261_0172: Ga0059261_0172 - Cytochrome c biogenesis factor, at 157,795 to 159,729 _0172 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1at 156.336 kb on - strand, within Ga0059261_0169at 156.647 kb on + strand, within Ga0059261_0169at 156.776 kb on + strand, within Ga0059261_0169at 156.777 kb on - strand, within Ga0059261_0169at 156.777 kb on - strand, within Ga0059261_0169at 156.777 kb on - strand, within Ga0059261_0169at 156.825 kb on + strand, within Ga0059261_0169at 156.825 kb on + strand, within Ga0059261_0169at 156.825 kb on + strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.826 kb on - strand, within Ga0059261_0169at 156.875 kb on - strandat 156.902 kb on + strandat 156.902 kb on + strandat 156.903 kb on - strandat 156.903 kb on - strandat 157.006 kb on + strand, within Ga0059261_0170at 157.006 kb on + strand, within Ga0059261_0170at 157.007 kb on - strand, within Ga0059261_0170at 157.015 kb on + strandat 157.015 kb on + strand, within Ga0059261_0170at 157.016 kb on - strand, within Ga0059261_0170at 157.016 kb on - strand, within Ga0059261_0170at 157.016 kb on - strandat 157.016 kb on - strand, within Ga0059261_0170at 157.016 kb on - strand, within Ga0059261_0170at 157.024 kb on + strand, within Ga0059261_0170at 157.024 kb on + strand, within Ga0059261_0170at 157.112 kb on + strand, within Ga0059261_0170at 157.113 kb on - strand, within Ga0059261_0170at 157.113 kb on - strand, within Ga0059261_0170at 157.113 kb on - strandat 157.113 kb on - strand, within Ga0059261_0170at 157.219 kb on + strand, within Ga0059261_0170at 157.333 kb on + strand, within Ga0059261_0171at 157.443 kb on + strand, within Ga0059261_0171at 157.444 kb on - strand, within Ga0059261_0171at 157.444 kb on - strand, within Ga0059261_0171at 157.746 kb on - strandat 157.823 kb on - strandat 157.823 kb on - strandat 157.823 kb on - strandat 157.933 kb on + strandat 157.933 kb on + strandat 157.933 kb on + strandat 157.933 kb on + strandat 157.934 kb on - strandat 157.934 kb on - strandat 157.934 kb on - strandat 157.934 kb on - strandat 157.970 kb on - strandat 157.976 kb on + strandat 157.976 kb on + strandat 157.977 kb on - strandat 157.977 kb on - strandat 157.977 kb on - strandat 158.019 kb on + strand, within Ga0059261_0172at 158.039 kb on + strand, within Ga0059261_0172at 158.040 kb on - strandat 158.040 kb on - strand, within Ga0059261_0172at 158.040 kb on - strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.180 kb on + strand, within Ga0059261_0172at 158.181 kb on - strand, within Ga0059261_0172at 158.181 kb on - strand, within Ga0059261_0172at 158.181 kb on - strand, within Ga0059261_0172at 158.181 kb on - strand, within Ga0059261_0172at 158.181 kb on - strand, within Ga0059261_0172at 158.183 kb on + strand, within Ga0059261_0172at 158.183 kb on + strand, within Ga0059261_0172at 158.184 kb on - strand, within Ga0059261_0172at 158.196 kb on - strand, within Ga0059261_0172at 158.196 kb on - strand, within Ga0059261_0172

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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156,336 - Ga0059261_0169 0.13 +0.8
156,647 + Ga0059261_0169 0.61 -0.5
156,776 + Ga0059261_0169 0.81 -0.4
156,777 - Ga0059261_0169 0.81 -0.6
156,777 - Ga0059261_0169 0.81 +0.6
156,777 - Ga0059261_0169 0.81 -0.3
156,825 + Ga0059261_0169 0.88 -1.2
156,825 + Ga0059261_0169 0.88 +0.0
156,825 + Ga0059261_0169 0.88 -0.3
156,826 - Ga0059261_0169 0.88 +0.1
156,826 - Ga0059261_0169 0.88 -0.3
156,826 - Ga0059261_0169 0.88 +0.0
156,826 - Ga0059261_0169 0.88 -0.6
156,826 - Ga0059261_0169 0.88 +0.1
156,826 - Ga0059261_0169 0.88 +0.6
156,875 - +0.4
156,902 + +0.3
156,902 + -0.2
156,903 - -0.3
156,903 - +0.0
157,006 + Ga0059261_0170 0.29 -0.1
157,006 + Ga0059261_0170 0.29 -2.3
157,007 - Ga0059261_0170 0.29 -0.7
157,015 + -0.1
157,015 + Ga0059261_0170 0.31 +0.1
157,016 - Ga0059261_0170 0.31 -1.5
157,016 - Ga0059261_0170 0.31 -0.7
157,016 - -0.1
157,016 - Ga0059261_0170 0.31 -1.8
157,016 - Ga0059261_0170 0.31 -2.1
157,024 + Ga0059261_0170 0.34 -1.0
157,024 + Ga0059261_0170 0.34 -1.6
157,112 + Ga0059261_0170 0.57 -0.7
157,113 - Ga0059261_0170 0.57 +0.4
157,113 - Ga0059261_0170 0.57 -0.7
157,113 - -0.7
157,113 - Ga0059261_0170 0.57 -1.7
157,219 + Ga0059261_0170 0.85 -1.1
157,333 + Ga0059261_0171 0.12 -0.7
157,443 + Ga0059261_0171 0.33 -1.1
157,444 - Ga0059261_0171 0.33 -2.0
157,444 - Ga0059261_0171 0.33 -0.7
157,746 - -0.4
157,823 - -0.3
157,823 - +0.0
157,823 - +0.7
157,933 + -1.5
157,933 + -1.1
157,933 + -0.1
157,933 + -1.1
157,934 - +0.3
157,934 - -0.1
157,934 - -0.9
157,934 - -0.5
157,970 - -1.3
157,976 + +0.9
157,976 + +0.3
157,977 - -1.4
157,977 - -1.1
157,977 - -0.5
158,019 + Ga0059261_0172 0.12 -1.7
158,039 + Ga0059261_0172 0.13 +0.4
158,040 - -0.7
158,040 - Ga0059261_0172 0.13 -0.9
158,040 - Ga0059261_0172 0.13 -1.0
158,180 + Ga0059261_0172 0.20 -1.0
158,180 + Ga0059261_0172 0.20 -0.1
158,180 + Ga0059261_0172 0.20 -1.5
158,180 + Ga0059261_0172 0.20 -1.7
158,180 + Ga0059261_0172 0.20 -1.7
158,180 + Ga0059261_0172 0.20 +0.6
158,180 + Ga0059261_0172 0.20 -2.0
158,180 + Ga0059261_0172 0.20 -0.6
158,180 + Ga0059261_0172 0.20 -1.7
158,181 - Ga0059261_0172 0.20 -1.7
158,181 - Ga0059261_0172 0.20 -1.1
158,181 - Ga0059261_0172 0.20 -0.5
158,181 - Ga0059261_0172 0.20 -1.0
158,181 - Ga0059261_0172 0.20 -0.7
158,183 + Ga0059261_0172 0.20 -0.5
158,183 + Ga0059261_0172 0.20 -2.0
158,184 - Ga0059261_0172 0.20 -0.4
158,196 - Ga0059261_0172 0.21 +0.0
158,196 - Ga0059261_0172 0.21 -0.1

Or see this region's nucleotide sequence