Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0163

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0160 and Ga0059261_0161 overlap by 4 nucleotidesGa0059261_0161 and Ga0059261_0162 overlap by 1 nucleotidesGa0059261_0162 and Ga0059261_0163 are separated by 158 nucleotidesGa0059261_0163 and Ga0059261_0164 are separated by 16 nucleotidesGa0059261_0164 and Ga0059261_0165 are separated by 156 nucleotidesGa0059261_0165 and Ga0059261_0166 are separated by 88 nucleotidesGa0059261_0166 and Ga0059261_0167 are separated by 108 nucleotides Ga0059261_0160: Ga0059261_0160 - Molybdopterin converting factor, large subunit, at 150,627 to 151,085 _0160 Ga0059261_0161: Ga0059261_0161 - molybdopterin converting factor, subunit 1, non-archaeal, at 151,082 to 151,333 _0161 Ga0059261_0162: Ga0059261_0162 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 151,333 to 151,887 _0162 Ga0059261_0163: Ga0059261_0163 - Major Facilitator Superfamily, at 152,046 to 153,341 _0163 Ga0059261_0164: Ga0059261_0164 - hypothetical protein, at 153,358 to 153,525 _0164 Ga0059261_0165: Ga0059261_0165 - tRNA, at 153,682 to 153,757 _0165 Ga0059261_0166: Ga0059261_0166 - TIGR02300 family protein, at 153,846 to 154,163 _0166 Ga0059261_0167: Ga0059261_0167 - 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19), at 154,272 to 155,603 _0167 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.130 kb on + strand, within Ga0059261_0161at 151.131 kb on - strand, within Ga0059261_0161at 151.131 kb on - strand, within Ga0059261_0161at 151.131 kb on - strand, within Ga0059261_0161at 151.131 kb on - strand, within Ga0059261_0161at 151.131 kb on - strand, within Ga0059261_0161at 151.320 kb on + strandat 151.320 kb on + strandat 151.321 kb on - strandat 151.321 kb on - strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.338 kb on + strandat 151.339 kb on - strandat 151.339 kb on - strandat 151.339 kb on - strandat 151.339 kb on - strandat 151.339 kb on - strandat 151.339 kb on - strandat 151.945 kb on + strandat 151.945 kb on + strandat 152.005 kb on - strandat 152.371 kb on - strand, within Ga0059261_0163at 152.451 kb on + strand, within Ga0059261_0163at 152.524 kb on - strand, within Ga0059261_0163at 152.524 kb on - strand, within Ga0059261_0163at 152.524 kb on - strand, within Ga0059261_0163at 152.524 kb on - strand, within Ga0059261_0163at 152.826 kb on - strand, within Ga0059261_0163at 152.826 kb on - strand, within Ga0059261_0163at 152.863 kb on + strand, within Ga0059261_0163at 153.027 kb on + strand, within Ga0059261_0163at 153.188 kb on + strand, within Ga0059261_0163at 153.188 kb on + strand, within Ga0059261_0163at 153.189 kb on - strand, within Ga0059261_0163at 153.267 kb on - strandat 153.339 kb on + strandat 153.339 kb on + strandat 153.340 kb on - strandat 153.340 kb on - strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.374 kb on + strandat 153.375 kb on - strand, within Ga0059261_0164at 153.375 kb on - strand, within Ga0059261_0164at 153.375 kb on - strand, within Ga0059261_0164at 153.375 kb on - strand, within Ga0059261_0164at 153.375 kb on - strand, within Ga0059261_0164at 153.375 kb on - strand, within Ga0059261_0164at 153.398 kb on + strand, within Ga0059261_0164at 153.398 kb on + strand, within Ga0059261_0164at 153.398 kb on + strand, within Ga0059261_0164at 153.399 kb on - strand, within Ga0059261_0164at 153.399 kb on - strand, within Ga0059261_0164at 153.399 kb on - strand, within Ga0059261_0164at 153.509 kb on + strandat 153.525 kb on + strandat 153.537 kb on - strandat 153.548 kb on + strandat 153.572 kb on + strandat 153.572 kb on + strandat 153.572 kb on + strandat 153.572 kb on + strandat 153.573 kb on - strandat 153.573 kb on - strandat 153.573 kb on - strandat 153.613 kb on + strandat 153.614 kb on - strandat 153.614 kb on - strandat 153.614 kb on - strandat 153.614 kb on - strandat 153.614 kb on - strandat 153.614 kb on - strandat 153.785 kb on - strandat 153.835 kb on - strandat 154.105 kb on + strand, within Ga0059261_0166at 154.209 kb on + strandat 154.210 kb on - strandat 154.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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151,130 + Ga0059261_0161 0.19 +0.6
151,131 - Ga0059261_0161 0.19 +0.5
151,131 - Ga0059261_0161 0.19 -0.4
151,131 - Ga0059261_0161 0.19 +0.1
151,131 - Ga0059261_0161 0.19 +0.5
151,131 - Ga0059261_0161 0.19 -0.1
151,320 + -0.0
151,320 + -0.9
151,321 - +1.1
151,321 - +1.3
151,338 + -0.2
151,338 + +0.5
151,338 + -0.1
151,338 + -0.1
151,338 + +1.6
151,338 + -0.1
151,338 + +0.3
151,339 - -3.1
151,339 - -0.5
151,339 - -0.3
151,339 - +0.0
151,339 - -0.3
151,339 - -1.4
151,945 + +0.4
151,945 + -0.1
152,005 - -1.0
152,371 - Ga0059261_0163 0.25 -2.5
152,451 + Ga0059261_0163 0.31 -0.1
152,524 - Ga0059261_0163 0.37 -0.3
152,524 - Ga0059261_0163 0.37 -1.5
152,524 - Ga0059261_0163 0.37 -2.1
152,524 - Ga0059261_0163 0.37 +0.1
152,826 - Ga0059261_0163 0.60 -1.1
152,826 - Ga0059261_0163 0.60 -0.6
152,863 + Ga0059261_0163 0.63 -1.1
153,027 + Ga0059261_0163 0.76 +0.6
153,188 + Ga0059261_0163 0.88 -1.7
153,188 + Ga0059261_0163 0.88 +2.4
153,189 - Ga0059261_0163 0.88 -1.1
153,267 - -0.7
153,339 + +0.4
153,339 + -0.0
153,340 - -0.7
153,340 - -0.5
153,374 + +0.9
153,374 + -0.2
153,374 + +1.3
153,374 + +0.0
153,374 + +0.6
153,374 + -0.2
153,374 + -0.1
153,374 + -1.1
153,375 - Ga0059261_0164 0.10 +0.1
153,375 - Ga0059261_0164 0.10 -0.0
153,375 - Ga0059261_0164 0.10 -0.0
153,375 - Ga0059261_0164 0.10 -0.4
153,375 - Ga0059261_0164 0.10 +0.2
153,375 - Ga0059261_0164 0.10 +0.3
153,398 + Ga0059261_0164 0.24 -1.8
153,398 + Ga0059261_0164 0.24 +0.3
153,398 + Ga0059261_0164 0.24 +0.1
153,399 - Ga0059261_0164 0.24 +0.2
153,399 - Ga0059261_0164 0.24 -0.3
153,399 - Ga0059261_0164 0.24 -0.1
153,509 + -0.3
153,525 + -1.1
153,537 - -0.0
153,548 + -0.3
153,572 + -0.9
153,572 + +0.3
153,572 + +0.3
153,572 + -0.3
153,573 - +0.5
153,573 - -0.1
153,573 - -0.1
153,613 + +0.3
153,614 - +0.3
153,614 - +1.0
153,614 - +1.1
153,614 - -0.1
153,614 - +0.2
153,614 - -1.0
153,785 - -0.1
153,835 - -0.1
154,105 + Ga0059261_0166 0.81 -1.5
154,209 + +0.9
154,210 - -0.5
154,210 - -0.5

Or see this region's nucleotide sequence