Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0146

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0144 and Ga0059261_0145 are separated by 4 nucleotidesGa0059261_0145 and Ga0059261_0146 overlap by 25 nucleotidesGa0059261_0146 and Ga0059261_0147 overlap by 73 nucleotidesGa0059261_0147 and Ga0059261_0148 overlap by 1 nucleotides Ga0059261_0144: Ga0059261_0144 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 138,047 to 139,198 _0144 Ga0059261_0145: Ga0059261_0145 - hypothetical protein, at 139,203 to 139,733 _0145 Ga0059261_0146: Ga0059261_0146 - amidohydrolase, PncC family, at 139,709 to 140,266 _0146 Ga0059261_0147: Ga0059261_0147 - Oligoketide cyclase/lipid transport protein, at 140,194 to 140,688 _0147 Ga0059261_0148: Ga0059261_0148 - lipoate synthase, at 140,688 to 141,650 _0148 Position (kb) 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2at 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.196 kb on + strandat 139.197 kb on - strandat 139.197 kb on - strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.202 kb on + strandat 139.203 kb on - strandat 139.203 kb on - strandat 139.203 kb on - strandat 139.203 kb on - strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.208 kb on + strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.209 kb on - strandat 139.708 kb on + strandat 139.708 kb on + strandat 139.715 kb on + strandat 139.716 kb on - strandat 139.907 kb on + strand, within Ga0059261_0146at 139.907 kb on + strand, within Ga0059261_0146at 139.907 kb on + strand, within Ga0059261_0146at 139.908 kb on - strand, within Ga0059261_0146at 139.908 kb on - strand, within Ga0059261_0146at 140.153 kb on - strand, within Ga0059261_0146at 140.265 kb on - strandat 140.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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139,196 + +0.2
139,196 + -1.3
139,196 + -0.8
139,196 + -0.0
139,196 + -0.2
139,196 + +0.1
139,196 + -0.3
139,196 + +0.3
139,196 + -0.6
139,196 + -0.5
139,196 + +0.1
139,196 + -0.3
139,196 + +0.9
139,197 - -2.6
139,197 - -1.0
139,202 + +0.1
139,202 + -0.6
139,202 + -0.6
139,202 + -0.2
139,202 + +1.9
139,202 + -1.1
139,202 + +0.5
139,203 - -0.0
139,203 - +0.1
139,203 - -0.0
139,203 - -0.4
139,208 + +0.4
139,208 + +0.4
139,208 + -0.5
139,208 + +0.5
139,208 + -0.1
139,208 + +0.5
139,208 + -0.4
139,208 + +0.2
139,208 + -0.1
139,208 + -0.2
139,208 + -0.5
139,209 - -0.6
139,209 - -0.3
139,209 - -0.7
139,209 - -0.9
139,209 - +0.2
139,209 - -1.4
139,209 - +0.9
139,209 - -0.9
139,209 - +1.0
139,209 - +0.1
139,209 - -0.1
139,209 - +0.1
139,209 - +0.5
139,209 - -0.1
139,708 + +0.2
139,708 + +0.2
139,715 + -1.1
139,716 - -0.1
139,907 + Ga0059261_0146 0.35 -1.1
139,907 + Ga0059261_0146 0.35 -0.8
139,907 + Ga0059261_0146 0.35 -2.0
139,908 - Ga0059261_0146 0.36 -0.5
139,908 - Ga0059261_0146 0.36 +0.4
140,153 - Ga0059261_0146 0.80 +0.9
140,265 - -1.5
140,265 - -0.6

Or see this region's nucleotide sequence