Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0144 and Ga0059261_0145 are separated by 4 nucleotides Ga0059261_0145 and Ga0059261_0146 overlap by 25 nucleotides Ga0059261_0146 and Ga0059261_0147 overlap by 73 nucleotides Ga0059261_0147 and Ga0059261_0148 overlap by 1 nucleotides
Ga0059261_0144: Ga0059261_0144 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 138,047 to 139,198
_0144
Ga0059261_0145: Ga0059261_0145 - hypothetical protein, at 139,203 to 139,733
_0145
Ga0059261_0146: Ga0059261_0146 - amidohydrolase, PncC family, at 139,709 to 140,266
_0146
Ga0059261_0147: Ga0059261_0147 - Oligoketide cyclase/lipid transport protein, at 140,194 to 140,688
_0147
Ga0059261_0148: Ga0059261_0148 - lipoate synthase, at 140,688 to 141,650
_0148
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.196 kb on + strand at 139.197 kb on - strand at 139.197 kb on - strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.202 kb on + strand at 139.203 kb on - strand at 139.203 kb on - strand at 139.203 kb on - strand at 139.203 kb on - strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.208 kb on + strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.209 kb on - strand at 139.708 kb on + strand at 139.708 kb on + strand at 139.715 kb on + strand at 139.716 kb on - strand at 139.907 kb on + strand, within Ga0059261_0146 at 139.907 kb on + strand, within Ga0059261_0146 at 139.907 kb on + strand, within Ga0059261_0146 at 139.908 kb on - strand, within Ga0059261_0146 at 139.908 kb on - strand, within Ga0059261_0146 at 140.153 kb on - strand, within Ga0059261_0146 at 140.265 kb on - strand at 140.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 139,196 + +0.2 139,196 + -1.3 139,196 + -0.8 139,196 + -0.0 139,196 + -0.2 139,196 + +0.1 139,196 + -0.3 139,196 + +0.3 139,196 + -0.6 139,196 + -0.5 139,196 + +0.1 139,196 + -0.3 139,196 + +0.9 139,197 - -2.6 139,197 - -1.0 139,202 + +0.1 139,202 + -0.6 139,202 + -0.6 139,202 + -0.2 139,202 + +1.9 139,202 + -1.1 139,202 + +0.5 139,203 - -0.0 139,203 - +0.1 139,203 - -0.0 139,203 - -0.4 139,208 + +0.4 139,208 + +0.4 139,208 + -0.5 139,208 + +0.5 139,208 + -0.1 139,208 + +0.5 139,208 + -0.4 139,208 + +0.2 139,208 + -0.1 139,208 + -0.2 139,208 + -0.5 139,209 - -0.6 139,209 - -0.3 139,209 - -0.7 139,209 - -0.9 139,209 - +0.2 139,209 - -1.4 139,209 - +0.9 139,209 - -0.9 139,209 - +1.0 139,209 - +0.1 139,209 - -0.1 139,209 - +0.1 139,209 - +0.5 139,209 - -0.1 139,708 + +0.2 139,708 + +0.2 139,715 + -1.1 139,716 - -0.1 139,907 + Ga0059261_0146 0.35 -1.1 139,907 + Ga0059261_0146 0.35 -0.8 139,907 + Ga0059261_0146 0.35 -2.0 139,908 - Ga0059261_0146 0.36 -0.5 139,908 - Ga0059261_0146 0.36 +0.4 140,153 - Ga0059261_0146 0.80 +0.9 140,265 - -1.5 140,265 - -0.6
Or see this region's nucleotide sequence