Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0059

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0057 and Ga0059261_0058 are separated by 41 nucleotidesGa0059261_0058 and Ga0059261_0059 are separated by 15 nucleotidesGa0059261_0059 and Ga0059261_0060 are separated by 2 nucleotidesGa0059261_0060 and Ga0059261_0061 are separated by 147 nucleotides Ga0059261_0057: Ga0059261_0057 - Glycosyltransferase, at 51,062 to 52,420 _0057 Ga0059261_0058: Ga0059261_0058 - monothiol glutaredoxin, Grx4 family, at 52,462 to 52,791 _0058 Ga0059261_0059: Ga0059261_0059 - Stress-induced morphogen (activity unknown), at 52,807 to 53,049 _0059 Ga0059261_0060: Ga0059261_0060 - Uncharacterized conserved protein, at 53,052 to 53,375 _0060 Ga0059261_0061: Ga0059261_0061 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 53,523 to 54,368 _0061 Position (kb) 52 53 54Strain fitness (log2 ratio) -1 0 1at 51.874 kb on + strand, within Ga0059261_0057at 51.874 kb on + strand, within Ga0059261_0057at 51.874 kb on + strand, within Ga0059261_0057at 51.874 kb on + strand, within Ga0059261_0057at 51.874 kb on + strand, within Ga0059261_0057at 51.875 kb on - strand, within Ga0059261_0057at 51.875 kb on - strand, within Ga0059261_0057at 51.875 kb on - strand, within Ga0059261_0057at 51.875 kb on - strand, within Ga0059261_0057at 51.876 kb on + strand, within Ga0059261_0057at 51.876 kb on + strand, within Ga0059261_0057at 51.877 kb on - strand, within Ga0059261_0057at 51.877 kb on - strand, within Ga0059261_0057at 51.877 kb on - strand, within Ga0059261_0057at 51.897 kb on + strand, within Ga0059261_0057at 51.897 kb on + strand, within Ga0059261_0057at 51.897 kb on + strand, within Ga0059261_0057at 51.898 kb on - strand, within Ga0059261_0057at 51.898 kb on - strand, within Ga0059261_0057at 51.912 kb on + strand, within Ga0059261_0057at 51.918 kb on + strand, within Ga0059261_0057at 51.918 kb on + strand, within Ga0059261_0057at 51.918 kb on + strand, within Ga0059261_0057at 51.918 kb on + strand, within Ga0059261_0057at 51.918 kb on + strand, within Ga0059261_0057at 51.919 kb on - strand, within Ga0059261_0057at 51.919 kb on - strand, within Ga0059261_0057at 52.107 kb on + strand, within Ga0059261_0057at 52.107 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.201 kb on + strand, within Ga0059261_0057at 52.202 kb on - strand, within Ga0059261_0057at 52.202 kb on - strand, within Ga0059261_0057at 52.202 kb on - strand, within Ga0059261_0057at 52.202 kb on - strand, within Ga0059261_0057at 52.281 kb on + strand, within Ga0059261_0057at 52.281 kb on + strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.282 kb on - strand, within Ga0059261_0057at 52.302 kb on + strandat 52.302 kb on + strandat 52.302 kb on + strandat 52.302 kb on + strandat 52.303 kb on - strandat 52.303 kb on - strandat 52.303 kb on - strandat 52.303 kb on - strandat 52.335 kb on + strandat 52.336 kb on - strandat 52.336 kb on - strandat 52.336 kb on - strandat 52.336 kb on - strandat 52.423 kb on + strandat 52.423 kb on + strandat 52.423 kb on + strandat 52.423 kb on + strandat 52.423 kb on + strandat 52.423 kb on + strandat 52.424 kb on - strandat 52.424 kb on - strandat 52.424 kb on - strandat 52.424 kb on - strandat 52.424 kb on - strandat 52.428 kb on + strandat 52.428 kb on + strandat 52.429 kb on - strandat 52.429 kb on - strandat 52.429 kb on - strandat 52.436 kb on - strandat 52.436 kb on - strandat 52.887 kb on - strand, within Ga0059261_0059at 52.887 kb on - strand, within Ga0059261_0059at 52.887 kb on - strand, within Ga0059261_0059at 52.953 kb on - strand, within Ga0059261_0059at 53.053 kb on + strandat 53.054 kb on - strandat 53.054 kb on - strandat 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.225 kb on - strand, within Ga0059261_0060at 53.410 kb on + strandat 53.410 kb on + strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.411 kb on - strandat 53.489 kb on + strandat 53.491 kb on + strandat 53.491 kb on + strandat 53.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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51,874 + Ga0059261_0057 0.60 +1.3
51,874 + Ga0059261_0057 0.60 +0.2
51,874 + Ga0059261_0057 0.60 -0.3
51,874 + Ga0059261_0057 0.60 +1.7
51,874 + Ga0059261_0057 0.60 +0.2
51,875 - Ga0059261_0057 0.60 -0.5
51,875 - Ga0059261_0057 0.60 -1.5
51,875 - Ga0059261_0057 0.60 -0.1
51,875 - Ga0059261_0057 0.60 -1.2
51,876 + Ga0059261_0057 0.60 -0.1
51,876 + Ga0059261_0057 0.60 -0.7
51,877 - Ga0059261_0057 0.60 -0.6
51,877 - Ga0059261_0057 0.60 +1.6
51,877 - Ga0059261_0057 0.60 +0.1
51,897 + Ga0059261_0057 0.61 +0.0
51,897 + Ga0059261_0057 0.61 +0.2
51,897 + Ga0059261_0057 0.61 -0.6
51,898 - Ga0059261_0057 0.62 -0.7
51,898 - Ga0059261_0057 0.62 -0.0
51,912 + Ga0059261_0057 0.63 +0.5
51,918 + Ga0059261_0057 0.63 +0.2
51,918 + Ga0059261_0057 0.63 +0.1
51,918 + Ga0059261_0057 0.63 -0.1
51,918 + Ga0059261_0057 0.63 -0.1
51,918 + Ga0059261_0057 0.63 +0.2
51,919 - Ga0059261_0057 0.63 -0.0
51,919 - Ga0059261_0057 0.63 -0.8
52,107 + Ga0059261_0057 0.77 -0.2
52,107 + Ga0059261_0057 0.77 -0.6
52,201 + Ga0059261_0057 0.84 -0.1
52,201 + Ga0059261_0057 0.84 -0.1
52,201 + Ga0059261_0057 0.84 +0.2
52,201 + Ga0059261_0057 0.84 -0.2
52,201 + Ga0059261_0057 0.84 +0.4
52,201 + Ga0059261_0057 0.84 +0.5
52,201 + Ga0059261_0057 0.84 +1.5
52,201 + Ga0059261_0057 0.84 +0.0
52,201 + Ga0059261_0057 0.84 +0.7
52,202 - Ga0059261_0057 0.84 -0.1
52,202 - Ga0059261_0057 0.84 +0.1
52,202 - Ga0059261_0057 0.84 -0.1
52,202 - Ga0059261_0057 0.84 +0.5
52,281 + Ga0059261_0057 0.90 +0.6
52,281 + Ga0059261_0057 0.90 +0.9
52,282 - Ga0059261_0057 0.90 -0.2
52,282 - Ga0059261_0057 0.90 +0.2
52,282 - Ga0059261_0057 0.90 +0.4
52,282 - Ga0059261_0057 0.90 +1.3
52,282 - Ga0059261_0057 0.90 -0.2
52,282 - Ga0059261_0057 0.90 +0.3
52,282 - Ga0059261_0057 0.90 +0.1
52,282 - Ga0059261_0057 0.90 +0.4
52,302 + -0.0
52,302 + -1.3
52,302 + +0.6
52,302 + +0.1
52,303 - +0.5
52,303 - -0.5
52,303 - -0.1
52,303 - +0.1
52,335 + +0.3
52,336 - +0.2
52,336 - -0.4
52,336 - +0.4
52,336 - -0.1
52,423 + +0.6
52,423 + -1.0
52,423 + -0.8
52,423 + +0.0
52,423 + -0.1
52,423 + -1.0
52,424 - +0.7
52,424 - -0.1
52,424 - +0.1
52,424 - -0.1
52,424 - -0.3
52,428 + +1.4
52,428 + -0.8
52,429 - -0.7
52,429 - -0.2
52,429 - +0.4
52,436 - +0.1
52,436 - +0.2
52,887 - Ga0059261_0059 0.33 -0.0
52,887 - Ga0059261_0059 0.33 -1.1
52,887 - Ga0059261_0059 0.33 +0.6
52,953 - Ga0059261_0059 0.60 -0.5
53,053 + -0.7
53,054 - -0.8
53,054 - +0.3
53,225 - Ga0059261_0060 0.53 -1.1
53,225 - Ga0059261_0060 0.53 -0.1
53,225 - Ga0059261_0060 0.53 -0.2
53,225 - Ga0059261_0060 0.53 -0.0
53,225 - Ga0059261_0060 0.53 -0.1
53,410 + -0.7
53,410 + -0.3
53,411 - -0.2
53,411 - +1.0
53,411 - +0.0
53,411 - +0.2
53,411 - -0.8
53,489 + +0.5
53,491 + +0.9
53,491 + -0.1
53,491 + -0.3

Or see this region's nucleotide sequence