Strain Fitness in Shewanella loihica PV-4 around Shew_3832

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3830 and Shew_3831 are separated by 9 nucleotidesShew_3831 and Shew_3832 are separated by 380 nucleotidesShew_3832 and Shew_3833 are separated by 649 nucleotidesShew_3833 and Shew_3834 overlap by 2 nucleotides Shew_3830: Shew_3830 - integrase catalytic subunit (RefSeq), at 4,560,988 to 4,561,722 _3830 Shew_3831: Shew_3831 - no description, at 4,561,732 to 4,561,851 _3831 Shew_3832: Shew_3832 - putative hydrolase (RefSeq), at 4,562,232 to 4,564,238 _3832 Shew_3833: Shew_3833 - no description, at 4,564,888 to 4,565,193 _3833 Shew_3834: Shew_3834 - no description, at 4,565,192 to 4,565,311 _3834 Position (kb) 4562 4563 4564 4565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4561.252 kb on + strand, within Shew_3830at 4561.284 kb on + strand, within Shew_3830at 4561.354 kb on + strand, within Shew_3830at 4561.460 kb on - strand, within Shew_3830at 4561.519 kb on - strand, within Shew_3830at 4561.592 kb on - strand, within Shew_3830at 4561.615 kb on + strand, within Shew_3830at 4561.617 kb on + strand, within Shew_3830at 4561.617 kb on + strand, within Shew_3830at 4561.623 kb on - strand, within Shew_3830at 4561.625 kb on - strand, within Shew_3830at 4561.625 kb on - strand, within Shew_3830at 4561.625 kb on - strand, within Shew_3830at 4561.625 kb on - strand, within Shew_3830at 4561.629 kb on + strand, within Shew_3830at 4561.629 kb on + strand, within Shew_3830at 4561.637 kb on - strand, within Shew_3830at 4561.637 kb on - strand, within Shew_3830at 4561.637 kb on - strand, within Shew_3830at 4561.647 kb on - strand, within Shew_3830at 4561.723 kb on + strandat 4561.731 kb on - strandat 4561.829 kb on + strand, within Shew_3831at 4561.829 kb on + strand, within Shew_3831at 4561.829 kb on + strand, within Shew_3831at 4561.829 kb on + strand, within Shew_3831at 4561.829 kb on + strand, within Shew_3831at 4561.833 kb on + strand, within Shew_3831at 4561.833 kb on + strand, within Shew_3831at 4561.833 kb on + strand, within Shew_3831at 4561.833 kb on + strand, within Shew_3831at 4561.837 kb on - strand, within Shew_3831at 4561.837 kb on - strand, within Shew_3831at 4561.841 kb on - strandat 4561.841 kb on - strandat 4561.841 kb on - strandat 4561.873 kb on - strandat 4561.874 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.875 kb on + strandat 4561.878 kb on - strandat 4561.880 kb on + strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.883 kb on - strandat 4561.892 kb on + strandat 4561.905 kb on - strandat 4561.905 kb on - strandat 4561.910 kb on + strandat 4561.981 kb on - strandat 4562.050 kb on + strandat 4562.058 kb on - strandat 4562.058 kb on - strandat 4562.129 kb on - strandat 4562.131 kb on + strandat 4562.151 kb on + strandat 4562.167 kb on + strandat 4562.167 kb on + strandat 4562.167 kb on + strandat 4562.175 kb on - strandat 4562.175 kb on - strandat 4562.584 kb on + strand, within Shew_3832at 4562.598 kb on + strand, within Shew_3832at 4562.641 kb on + strand, within Shew_3832at 4562.791 kb on - strand, within Shew_3832at 4562.982 kb on + strand, within Shew_3832at 4562.995 kb on - strand, within Shew_3832at 4563.084 kb on + strand, within Shew_3832at 4563.290 kb on + strand, within Shew_3832at 4563.290 kb on + strand, within Shew_3832at 4563.298 kb on - strand, within Shew_3832at 4563.298 kb on - strand, within Shew_3832at 4563.298 kb on - strand, within Shew_3832at 4563.298 kb on - strand, within Shew_3832at 4563.308 kb on - strand, within Shew_3832at 4563.308 kb on - strand, within Shew_3832at 4563.354 kb on - strand, within Shew_3832at 4563.392 kb on + strand, within Shew_3832at 4563.455 kb on + strand, within Shew_3832at 4563.523 kb on + strand, within Shew_3832at 4563.581 kb on - strand, within Shew_3832at 4563.593 kb on + strand, within Shew_3832at 4563.624 kb on + strand, within Shew_3832at 4563.624 kb on + strand, within Shew_3832at 4563.624 kb on + strand, within Shew_3832at 4563.632 kb on - strand, within Shew_3832at 4563.632 kb on - strand, within Shew_3832at 4563.632 kb on - strand, within Shew_3832at 4563.632 kb on - strand, within Shew_3832at 4563.869 kb on + strand, within Shew_3832at 4563.877 kb on - strand, within Shew_3832at 4563.922 kb on - strand, within Shew_3832at 4563.922 kb on - strand, within Shew_3832at 4563.942 kb on - strand, within Shew_3832at 4563.957 kb on - strand, within Shew_3832at 4563.989 kb on + strand, within Shew_3832at 4564.001 kb on + strand, within Shew_3832at 4564.001 kb on + strand, within Shew_3832at 4564.024 kb on - strand, within Shew_3832at 4564.024 kb on - strand, within Shew_3832at 4564.024 kb on - strand, within Shew_3832at 4564.065 kb on - strandat 4564.121 kb on + strandat 4564.211 kb on + strandat 4564.214 kb on - strandat 4564.216 kb on + strandat 4564.253 kb on + strandat 4564.261 kb on + strandat 4564.261 kb on + strandat 4564.261 kb on + strandat 4564.261 kb on + strandat 4564.261 kb on + strandat 4564.268 kb on + strandat 4564.268 kb on + strandat 4564.269 kb on - strandat 4564.269 kb on - strandat 4564.275 kb on - strandat 4564.276 kb on - strandat 4564.335 kb on - strandat 4564.335 kb on - strandat 4564.336 kb on + strandat 4564.336 kb on + strandat 4564.336 kb on + strandat 4564.336 kb on + strandat 4564.344 kb on - strandat 4564.344 kb on - strandat 4564.344 kb on - strandat 4564.344 kb on - strandat 4564.346 kb on + strandat 4564.354 kb on - strandat 4564.354 kb on - strandat 4564.367 kb on + strandat 4564.367 kb on + strandat 4564.447 kb on - strandat 4564.464 kb on + strandat 4564.464 kb on + strandat 4564.464 kb on + strandat 4564.464 kb on + strandat 4564.464 kb on + strandat 4564.472 kb on - strandat 4564.472 kb on - strandat 4564.510 kb on - strandat 4564.525 kb on - strandat 4564.529 kb on - strandat 4564.566 kb on - strandat 4564.587 kb on + strandat 4564.587 kb on + strandat 4564.693 kb on + strandat 4564.727 kb on + strandat 4564.930 kb on - strand, within Shew_3833at 4564.973 kb on - strand, within Shew_3833at 4565.090 kb on + strand, within Shew_3833at 4565.131 kb on + strand, within Shew_3833

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,561,252 + Shew_3830 0.36 -0.4
4,561,284 + Shew_3830 0.40 -0.1
4,561,354 + Shew_3830 0.50 +0.0
4,561,460 - Shew_3830 0.64 -0.0
4,561,519 - Shew_3830 0.72 +0.1
4,561,592 - Shew_3830 0.82 +1.1
4,561,615 + Shew_3830 0.85 -0.1
4,561,617 + Shew_3830 0.86 +0.0
4,561,617 + Shew_3830 0.86 -1.7
4,561,623 - Shew_3830 0.86 -0.0
4,561,625 - Shew_3830 0.87 +0.3
4,561,625 - Shew_3830 0.87 +0.2
4,561,625 - Shew_3830 0.87 +0.3
4,561,625 - Shew_3830 0.87 +0.1
4,561,629 + Shew_3830 0.87 -0.1
4,561,629 + Shew_3830 0.87 +0.1
4,561,637 - Shew_3830 0.88 -0.2
4,561,637 - Shew_3830 0.88 +0.3
4,561,637 - Shew_3830 0.88 +0.1
4,561,647 - Shew_3830 0.90 +0.1
4,561,723 + -0.1
4,561,731 - -0.6
4,561,829 + Shew_3831 0.81 -0.0
4,561,829 + Shew_3831 0.81 +0.3
4,561,829 + Shew_3831 0.81 -0.1
4,561,829 + Shew_3831 0.81 +0.3
4,561,829 + Shew_3831 0.81 +0.1
4,561,833 + Shew_3831 0.84 -0.2
4,561,833 + Shew_3831 0.84 +0.4
4,561,833 + Shew_3831 0.84 -0.0
4,561,833 + Shew_3831 0.84 +0.7
4,561,837 - Shew_3831 0.88 +0.1
4,561,837 - Shew_3831 0.88 -0.2
4,561,841 - -0.0
4,561,841 - +0.3
4,561,841 - -0.1
4,561,873 - -0.1
4,561,874 + +0.0
4,561,875 + +0.1
4,561,875 + +0.3
4,561,875 + -0.1
4,561,875 + +0.1
4,561,875 + +0.2
4,561,875 + -0.1
4,561,875 + -0.3
4,561,875 + +0.0
4,561,875 + -0.1
4,561,875 + -0.0
4,561,875 + +0.0
4,561,875 + -0.2
4,561,875 + -0.2
4,561,875 + +0.0
4,561,875 + +0.7
4,561,875 + -0.1
4,561,878 - +0.2
4,561,880 + -0.0
4,561,883 - -0.1
4,561,883 - +0.2
4,561,883 - +0.4
4,561,883 - +0.1
4,561,883 - +0.2
4,561,883 - +0.7
4,561,883 - +0.0
4,561,883 - +0.1
4,561,883 - +0.3
4,561,883 - +0.5
4,561,883 - +0.1
4,561,883 - -1.6
4,561,883 - -0.0
4,561,883 - -1.1
4,561,883 - -1.0
4,561,883 - +0.1
4,561,892 + -0.2
4,561,905 - -0.5
4,561,905 - +0.3
4,561,910 + -0.8
4,561,981 - +0.1
4,562,050 + -0.0
4,562,058 - +0.0
4,562,058 - -0.1
4,562,129 - -0.1
4,562,131 + +0.1
4,562,151 + -0.3
4,562,167 + +0.4
4,562,167 + -0.5
4,562,167 + +0.2
4,562,175 - -0.5
4,562,175 - -0.0
4,562,584 + Shew_3832 0.18 -0.8
4,562,598 + Shew_3832 0.18 -0.0
4,562,641 + Shew_3832 0.20 +0.5
4,562,791 - Shew_3832 0.28 -0.0
4,562,982 + Shew_3832 0.37 -0.2
4,562,995 - Shew_3832 0.38 +0.3
4,563,084 + Shew_3832 0.42 -3.5
4,563,290 + Shew_3832 0.53 +0.1
4,563,290 + Shew_3832 0.53 +0.1
4,563,298 - Shew_3832 0.53 -0.1
4,563,298 - Shew_3832 0.53 -0.7
4,563,298 - Shew_3832 0.53 +0.2
4,563,298 - Shew_3832 0.53 +0.4
4,563,308 - Shew_3832 0.54 +0.3
4,563,308 - Shew_3832 0.54 +0.2
4,563,354 - Shew_3832 0.56 -0.1
4,563,392 + Shew_3832 0.58 +0.0
4,563,455 + Shew_3832 0.61 +0.6
4,563,523 + Shew_3832 0.64 -0.1
4,563,581 - Shew_3832 0.67 -0.0
4,563,593 + Shew_3832 0.68 -0.1
4,563,624 + Shew_3832 0.69 -0.7
4,563,624 + Shew_3832 0.69 +0.1
4,563,624 + Shew_3832 0.69 +0.1
4,563,632 - Shew_3832 0.70 +0.3
4,563,632 - Shew_3832 0.70 -0.2
4,563,632 - Shew_3832 0.70 -0.3
4,563,632 - Shew_3832 0.70 -1.2
4,563,869 + Shew_3832 0.82 +0.1
4,563,877 - Shew_3832 0.82 -0.4
4,563,922 - Shew_3832 0.84 -0.7
4,563,922 - Shew_3832 0.84 +0.3
4,563,942 - Shew_3832 0.85 -0.2
4,563,957 - Shew_3832 0.86 -0.0
4,563,989 + Shew_3832 0.88 -0.2
4,564,001 + Shew_3832 0.88 -0.1
4,564,001 + Shew_3832 0.88 -0.3
4,564,024 - Shew_3832 0.89 -0.1
4,564,024 - Shew_3832 0.89 -1.0
4,564,024 - Shew_3832 0.89 -0.3
4,564,065 - +0.2
4,564,121 + -0.1
4,564,211 + +0.2
4,564,214 - -0.3
4,564,216 + +0.1
4,564,253 + +0.2
4,564,261 + +0.6
4,564,261 + -0.0
4,564,261 + -0.6
4,564,261 + +0.5
4,564,261 + +0.1
4,564,268 + +0.0
4,564,268 + +0.0
4,564,269 - +0.2
4,564,269 - +0.0
4,564,275 - -0.0
4,564,276 - +0.1
4,564,335 - +0.0
4,564,335 - +0.4
4,564,336 + +0.5
4,564,336 + -0.1
4,564,336 + -0.1
4,564,336 + +2.8
4,564,344 - -0.5
4,564,344 - +0.2
4,564,344 - -0.1
4,564,344 - -0.7
4,564,346 + +0.4
4,564,354 - +0.7
4,564,354 - +0.1
4,564,367 + +0.2
4,564,367 + -0.1
4,564,447 - +0.0
4,564,464 + +0.0
4,564,464 + -0.7
4,564,464 + +0.2
4,564,464 + -0.1
4,564,464 + +0.0
4,564,472 - +0.1
4,564,472 - -0.1
4,564,510 - +0.1
4,564,525 - +0.2
4,564,529 - +0.2
4,564,566 - -0.2
4,564,587 + +0.1
4,564,587 + -0.1
4,564,693 + +0.1
4,564,727 + +0.1
4,564,930 - Shew_3833 0.14 +0.2
4,564,973 - Shew_3833 0.28 -0.2
4,565,090 + Shew_3833 0.66 +0.2
4,565,131 + Shew_3833 0.79 -0.3

Or see this region's nucleotide sequence